jgi.p|Nanoce1779_2|594042, mRNA_6180 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594042
Unique NamemRNA_6180
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length973
Alignment locationscaffold_14:722556..723528 +

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Properties
Property NameValue
TranscriptId594128
TrackFilteredModels2
ProteinId594042
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:722556..723528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594042gene_6180Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594042mRNA_6180-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6180CDS_6180Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6180 ID=mRNA_6180|Name=jgi.p|Nanoce1779_2|594042|organism=Nannochloropsis oceanica|type=mRNA|length=973bp
GCGGGCGGGAGGGAGGGAGGGAGGATTGAGTGGTGCAGTGGTCGTAACGA
CGCCGCAGGAGCTGGCGGTGGTGGATGTGGTGAAGGGTGTGAGGATGATG
GAAGGGATGAAGGTCCCGACCTTGGCATGCGTGGTAAATATGGCCTATTT
TGTGTGTGGGTCTTGTCAGGAGAAGCACTATGTGTTTGGAGGAGGGGGAG
GAGGTGGAGGAGTGAAGGAGAGGATTAGGGGAGCAATGACCGTTGGGAAG
GAGAAGGAGGGCGGGAGGGAGGAGGAGGGCGTCTTGTCGGAAGAGGCGTT
TTTTGAATTGCCTCTGTCTCCGGCTGTATCGCGAGGGAACGACAGGGGGA
GGCCCGTGATGATGATGGAGGAGGGGGAGGTGGGAGGGGAGGAAGGCGGG
AGAGAGGGAGGGCAGGCAGCAGTGCAAGACGTGTACTTTAAGTTGGCGAC
CCGAGTGGCCGAGGAGATGTTCCGGCGATGGTACGACGGGAAAATCGTGC
CATTGGTGGAGTACAATGATAAGAATGATGTAATTGTCATGCGCATATTC
AGTAAGGAGGCTGCCAGACAGATCCGGCTGCGGCCAGCTGACGTCCGTTG
GTCGGATCCACGGACGGGGGAGGCATTGAAGGAGGGCGGGGAAGGAAAAG
GCGCGAAGGTGACGCCAGTGACGTTTGAGAAGAAAGGGAATTATGGTGTG
AGTGTGTTGTGGAGTGATGGGCACTATGCCTCCATATACACGTACGAGGC
GTTGGAGAGGATGGCGGCGCGGATCGCGGCGGAGAAGGAGGAGGGAGAGA
ATCTAATCAAAATGAAGTGATTTTGATTAGAATGATGAAAATTTGATTAC
ATGCAAGTGAATGAATTGAAAGACGTAGGATGGGAATATAAATGCTTGGT
CGAGGAGGTGGATGAAGCAAATCAAATAAAGGAAGAAAAAATGATAAAGA
AATGACCGAAAAATGTAAGAAAG
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protein sequence of jgi.p|Nanoce1779_2|594042

>mRNA_6180-protein ID=mRNA_6180-protein|Name=jgi.p|Nanoce1779_2|594042|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MMEGMKVPTLACVVNMAYFVCGSCQEKHYVFGGGGGGGGVKERIRGAMTV
GKEKEGGREEEGVLSEEAFFELPLSPAVSRGNDRGRPVMMMEEGEVGGEE
GGREGGQAAVQDVYFKLATRVAEEMFRRWYDGKIVPLVEYNDKNDVIVMR
IFSKEAARQIRLRPADVRWSDPRTGEALKEGGEGKGAKVTPVTFEKKGNY
GVSVLWSDGHYASIYTYEALERMAARIAAEKEEGENLIKMK*
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mRNA from alignment at scaffold_14:722556..723528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6180 ID=mRNA_6180|Name=jgi.p|Nanoce1779_2|594042|organism=Nannochloropsis oceanica|type=mRNA|length=973bp|location=Sequence derived from alignment at scaffold_14:722556..723528+ (Nannochloropsis oceanica)
GCGGGCGGGAGGGAGGGAGGGAGGATTGAGTGGTGCAGTGGTCGTAACGA
CGCCGCAGGAGCTGGCGGTGGTGGATGTGGTGAAGGGTGTGAGGATGATG
GAAGGGATGAAGGTCCCGACCTTGGCATGCGTGGTAAATATGGCCTATTT
TGTGTGTGGGTCTTGTCAGGAGAAGCACTATGTGTTTGGAGGAGGGGGAG
GAGGTGGAGGAGTGAAGGAGAGGATTAGGGGAGCAATGACCGTTGGGAAG
GAGAAGGAGGGCGGGAGGGAGGAGGAGGGCGTCTTGTCGGAAGAGGCGTT
TTTTGAATTGCCTCTGTCTCCGGCTGTATCGCGAGGGAACGACAGGGGGA
GGCCCGTGATGATGATGGAGGAGGGGGAGGTGGGAGGGGAGGAAGGCGGG
AGAGAGGGAGGGCAGGCAGCAGTGCAAGACGTGTACTTTAAGTTGGCGAC
CCGAGTGGCCGAGGAGATGTTCCGGCGATGGTACGACGGGAAAATCGTGC
CATTGGTGGAGTACAATGATAAGAATGATGTAATTGTCATGCGCATATTC
AGTAAGGAGGCTGCCAGACAGATCCGGCTGCGGCCAGCTGACGTCCGTTG
GTCGGATCCACGGACGGGGGAGGCATTGAAGGAGGGCGGGGAAGGAAAAG
GCGCGAAGGTGACGCCAGTGACGTTTGAGAAGAAAGGGAATTATGGTGTG
AGTGTGTTGTGGAGTGATGGGCACTATGCCTCCATATACACGTACGAGGC
GTTGGAGAGGATGGCGGCGCGGATCGCGGCGGAGAAGGAGGAGGGAGAGA
ATCTAATCAAAATGAAGTGATTTTGATTAGAATGATGAAAATTTGATTAC
ATGCAAGTGAATGAATTGAAAGACGTAGGATGGGAATATAAATGCTTGGT
CGAGGAGGTGGATGAAGCAAATCAAATAAAGGAAGAAAAAATGATAAAGA
AATGACCGAAAAATGTAAGAAAG
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Coding sequence (CDS) from alignment at scaffold_14:722556..723528+

>mRNA_6180 ID=mRNA_6180|Name=jgi.p|Nanoce1779_2|594042|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_14:722556..723528+ (Nannochloropsis oceanica)
ATGATGGAAGGGATGAAGGTCCCGACCTTGGCATGCGTGGTAAATATGGC
CTATTTTGTGTGTGGGTCTTGTCAGGAGAAGCACTATGTGTTTGGAGGAG
GGGGAGGAGGTGGAGGAGTGAAGGAGAGGATTAGGGGAGCAATGACCGTT
GGGAAGGAGAAGGAGGGCGGGAGGGAGGAGGAGGGCGTCTTGTCGGAAGA
GGCGTTTTTTGAATTGCCTCTGTCTCCGGCTGTATCGCGAGGGAACGACA
GGGGGAGGCCCGTGATGATGATGGAGGAGGGGGAGGTGGGAGGGGAGGAA
GGCGGGAGAGAGGGAGGGCAGGCAGCAGTGCAAGACGTGTACTTTAAGTT
GGCGACCCGAGTGGCCGAGGAGATGTTCCGGCGATGGTACGACGGGAAAA
TCGTGCCATTGGTGGAGTACAATGATAAGAATGATGTAATTGTCATGCGC
ATATTCAGTAAGGAGGCTGCCAGACAGATCCGGCTGCGGCCAGCTGACGT
CCGTTGGTCGGATCCACGGACGGGGGAGGCATTGAAGGAGGGCGGGGAAG
GAAAAGGCGCGAAGGTGACGCCAGTGACGTTTGAGAAGAAAGGGAATTAT
GGTGTGAGTGTGTTGTGGAGTGATGGGCACTATGCCTCCATATACACGTA
CGAGGCGTTGGAGAGGATGGCGGCGCGGATCGCGGCGGAGAAGGAGGAGG
GAGAGAATCTAATCAAAATGAAGTGA
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Synonyms
Publications