jgi.p|Nanoce1779_2|635954, mRNA_618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635954
Unique NamemRNA_618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1386
Alignment locationscaffold_2:19906..21291 +

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Properties
Property NameValue
TranscriptId636040
TrackFilteredModels2
ProteinId635954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:19906..21291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635954gene_618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635954mRNA_618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_618CDS_618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_618 ID=mRNA_618|Name=jgi.p|Nanoce1779_2|635954|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGAGCATCGTCGGCACCGCTGCTGTCACTGCTGGCGCTGTTGCCGCCAC
CGTACCAGCAGAGTTCATCCTCCCATCGTTACTCGCGAAGGGCTTACCAA
TTCTGGGCATATCATACCCACAAGAACTTATCTCGGAACCGACATTGGAA
GAGCGTGTCACGACTGCTCTCAATACATCACTTCTCTCTCCAGCCCACGC
CGCGACCTCAATGGACCTAATGTGTGACCTGGCCGCAGCCGGGAGGTTGC
ACCTACTCCAACGAATAATTAGAGAAGGAGGCCTAAGCCCCCAGGACTTG
AACAATTGTCGAGAAAGCACGACGGGGGCGGGATTGCTGCATGCAGCGGC
CTATGATGGGCGAGTGAATGTTATGCGGTATTTGGTGGTGAAGAAAAACG
TTGGGGTTGAGAGGAGGGACGAAGAAGGGAGGACGGCCTTGCACTATGCT
GTGTTGCGGCAACAGGAGGCAGCGGTATCCTATTTGTTGGTCAAGACACA
GGCGGATGTGGAAGAACGTGACAACGAGGGAAAGACAGCTTTGTTTCTCG
CAATTACACATGCGGTTAATTTGGCGATCATAAAGTTGCTGGTGCGGGTG
GGCAAGGCCGAGTTGCAGATGGAGGACCACGGAGGGAGGGAGGGAGTATC
GGTGAGGAGGAGGCATACAAGTGCAGCGCATGTGGCCGCATTTTACGGAA
GGTTAGATGTCTTGATGTTCTTGGTGGAGGAGGAGAGAGTGGTTGAAGTC
GGCTGCTTGGGCGGGATGCCTTGGGAAACATTCAAAAGAAGAGGGGGCGA
AAGGGAAGGAGGAGAAGGAGGAGATGATTGCAGGCGTTTTTATGATAGCG
GGAAAGGAGGAGGGCTAATTATGCCTTTGCATGTAGCGGCCGCGAGGGGG
CAGCTGGAGTGTGTGCAGTGGCTTGTAGCCCAAGCCCGAGCCTGTCTCGC
CCTCAATCCCTCCCTCGACGAGGACGACGAGGACGGATTCGAAGGGTACG
GGAAAGGAAGGGGGAGGAAGGGCGTGTGTTTCCGGCCTACGCCCCAGCAC
TTGGCTGTAGCACATGGGCAGCTGGCGGTGTTGATTTGGTTGTGTAGAGA
AGGCCCGTCCTATGGGGGGTTGGGAGCCGAGGCATGGGTGAATCGACCTA
CGTTTTCCTCCTTCTCTCCTTCCTTCTTTTCGGAGAGAGTGCGGGAGAAT
GGAAGGGACGAAGGCGTTACATGGTTGCCTTTACAGGTGGCGGTAGCGCG
CGTGGACTTGCCCATGGTTCGTTTTTTGGTGGAGCAGGCAGGGGCGGAGG
TCGGGGGAGAGGTGGGGAGGGCGGGGGGGGGTGATGGCGACGACGACGAC
AGCCACGTCTTGGGGCCTGGTTCGAGAAATGTGTGA
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protein sequence of jgi.p|Nanoce1779_2|635954

>mRNA_618-protein ID=mRNA_618-protein|Name=jgi.p|Nanoce1779_2|635954|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MSIVGTAAVTAGAVAATVPAEFILPSLLAKGLPILGISYPQELISEPTLE
ERVTTALNTSLLSPAHAATSMDLMCDLAAAGRLHLLQRIIREGGLSPQDL
NNCRESTTGAGLLHAAAYDGRVNVMRYLVVKKNVGVERRDEEGRTALHYA
VLRQQEAAVSYLLVKTQADVEERDNEGKTALFLAITHAVNLAIIKLLVRV
GKAELQMEDHGGREGVSVRRRHTSAAHVAAFYGRLDVLMFLVEEERVVEV
GCLGGMPWETFKRRGGEREGGEGGDDCRRFYDSGKGGGLIMPLHVAAARG
QLECVQWLVAQARACLALNPSLDEDDEDGFEGYGKGRGRKGVCFRPTPQH
LAVAHGQLAVLIWLCREGPSYGGLGAEAWVNRPTFSSFSPSFFSERVREN
GRDEGVTWLPLQVAVARVDLPMVRFLVEQAGAEVGGEVGRAGGGDGDDDD
SHVLGPGSRNV*
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mRNA from alignment at scaffold_2:19906..21291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_618 ID=mRNA_618|Name=jgi.p|Nanoce1779_2|635954|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at scaffold_2:19906..21291+ (Nannochloropsis oceanica)
ATGAGCATCGTCGGCACCGCTGCTGTCACTGCTGGCGCTGTTGCCGCCAC
CGTACCAGCAGAGTTCATCCTCCCATCGTTACTCGCGAAGGGCTTACCAA
TTCTGGGCATATCATACCCACAAGAACTTATCTCGGAACCGACATTGGAA
GAGCGTGTCACGACTGCTCTCAATACATCACTTCTCTCTCCAGCCCACGC
CGCGACCTCAATGGACCTAATGTGTGACCTGGCCGCAGCCGGGAGGTTGC
ACCTACTCCAACGAATAATTAGAGAAGGAGGCCTAAGCCCCCAGGACTTG
AACAATTGTCGAGAAAGCACGACGGGGGCGGGATTGCTGCATGCAGCGGC
CTATGATGGGCGAGTGAATGTTATGCGGTATTTGGTGGTGAAGAAAAACG
TTGGGGTTGAGAGGAGGGACGAAGAAGGGAGGACGGCCTTGCACTATGCT
GTGTTGCGGCAACAGGAGGCAGCGGTATCCTATTTGTTGGTCAAGACACA
GGCGGATGTGGAAGAACGTGACAACGAGGGAAAGACAGCTTTGTTTCTCG
CAATTACACATGCGGTTAATTTGGCGATCATAAAGTTGCTGGTGCGGGTG
GGCAAGGCCGAGTTGCAGATGGAGGACCACGGAGGGAGGGAGGGAGTATC
GGTGAGGAGGAGGCATACAAGTGCAGCGCATGTGGCCGCATTTTACGGAA
GGTTAGATGTCTTGATGTTCTTGGTGGAGGAGGAGAGAGTGGTTGAAGTC
GGCTGCTTGGGCGGGATGCCTTGGGAAACATTCAAAAGAAGAGGGGGCGA
AAGGGAAGGAGGAGAAGGAGGAGATGATTGCAGGCGTTTTTATGATAGCG
GGAAAGGAGGAGGGCTAATTATGCCTTTGCATGTAGCGGCCGCGAGGGGG
CAGCTGGAGTGTGTGCAGTGGCTTGTAGCCCAAGCCCGAGCCTGTCTCGC
CCTCAATCCCTCCCTCGACGAGGACGACGAGGACGGATTCGAAGGGTACG
GGAAAGGAAGGGGGAGGAAGGGCGTGTGTTTCCGGCCTACGCCCCAGCAC
TTGGCTGTAGCACATGGGCAGCTGGCGGTGTTGATTTGGTTGTGTAGAGA
AGGCCCGTCCTATGGGGGGTTGGGAGCCGAGGCATGGGTGAATCGACCTA
CGTTTTCCTCCTTCTCTCCTTCCTTCTTTTCGGAGAGAGTGCGGGAGAAT
GGAAGGGACGAAGGCGTTACATGGTTGCCTTTACAGGTGGCGGTAGCGCG
CGTGGACTTGCCCATGGTTCGTTTTTTGGTGGAGCAGGCAGGGGCGGAGG
TCGGGGGAGAGGTGGGGAGGGCGGGGGGGGGTGATGGCGACGACGACGAC
AGCCACGTCTTGGGGCCTGGTTCGAGAAATGTGTGA
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Coding sequence (CDS) from alignment at scaffold_2:19906..21291+

>mRNA_618 ID=mRNA_618|Name=jgi.p|Nanoce1779_2|635954|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_2:19906..21291+ (Nannochloropsis oceanica)
ATGAGCATCGTCGGCACCGCTGCTGTCACTGCTGGCGCTGTTGCCGCCAC
CGTACCAGCAGAGTTCATCCTCCCATCGTTACTCGCGAAGGGCTTACCAA
TTCTGGGCATATCATACCCACAAGAACTTATCTCGGAACCGACATTGGAA
GAGCGTGTCACGACTGCTCTCAATACATCACTTCTCTCTCCAGCCCACGC
CGCGACCTCAATGGACCTAATGTGTGACCTGGCCGCAGCCGGGAGGTTGC
ACCTACTCCAACGAATAATTAGAGAAGGAGGCCTAAGCCCCCAGGACTTG
AACAATTGTCGAGAAAGCACGACGGGGGCGGGATTGCTGCATGCAGCGGC
CTATGATGGGCGAGTGAATGTTATGCGGTATTTGGTGGTGAAGAAAAACG
TTGGGGTTGAGAGGAGGGACGAAGAAGGGAGGACGGCCTTGCACTATGCT
GTGTTGCGGCAACAGGAGGCAGCGGTATCCTATTTGTTGGTCAAGACACA
GGCGGATGTGGAAGAACGTGACAACGAGGGAAAGACAGCTTTGTTTCTCG
CAATTACACATGCGGTTAATTTGGCGATCATAAAGTTGCTGGTGCGGGTG
GGCAAGGCCGAGTTGCAGATGGAGGACCACGGAGGGAGGGAGGGAGTATC
GGTGAGGAGGAGGCATACAAGTGCAGCGCATGTGGCCGCATTTTACGGAA
GGTTAGATGTCTTGATGTTCTTGGTGGAGGAGGAGAGAGTGGTTGAAGTC
GGCTGCTTGGGCGGGATGCCTTGGGAAACATTCAAAAGAAGAGGGGGCGA
AAGGGAAGGAGGAGAAGGAGGAGATGATTGCAGGCGTTTTTATGATAGCG
GGAAAGGAGGAGGGCTAATTATGCCTTTGCATGTAGCGGCCGCGAGGGGG
CAGCTGGAGTGTGTGCAGTGGCTTGTAGCCCAAGCCCGAGCCTGTCTCGC
CCTCAATCCCTCCCTCGACGAGGACGACGAGGACGGATTCGAAGGGTACG
GGAAAGGAAGGGGGAGGAAGGGCGTGTGTTTCCGGCCTACGCCCCAGCAC
TTGGCTGTAGCACATGGGCAGCTGGCGGTGTTGATTTGGTTGTGTAGAGA
AGGCCCGTCCTATGGGGGGTTGGGAGCCGAGGCATGGGTGAATCGACCTA
CGTTTTCCTCCTTCTCTCCTTCCTTCTTTTCGGAGAGAGTGCGGGAGAAT
GGAAGGGACGAAGGCGTTACATGGTTGCCTTTACAGGTGGCGGTAGCGCG
CGTGGACTTGCCCATGGTTCGTTTTTTGGTGGAGCAGGCAGGGGCGGAGG
TCGGGGGAGAGGTGGGGAGGGCGGGGGGGGGTGATGGCGACGACGACGAC
AGCCACGTCTTGGGGCCTGGTTCGAGAAATGTGTGA
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Synonyms
Publications