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Properties
| Property Name | Value |
|---|
| TranscriptId | 594126 |
| Track | FilteredModels2 |
| ProteinId | 594040 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:721132..722552 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6179 ID=mRNA_6179|Name=jgi.p|Nanoce1779_2|594040|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
CAGGGTCACCAGTATGTTCTATCTGGTGCGGCAGCGCTGTCTTTCCTCAT
GGTGCAATGGCGCAAGAATTCGCCCCCGGCGCCTTTTCCATGTCGGACCA
TCATCGTCATCATCACCATCATCGTCCTTGCGGCCGTCCTTCTTATTTTC
CACTCGGTCACCGTCGCACTGTCTCCGCGCGTTGTCCACTGGCAGCGTCA
AAAGCGATATCAGAGAAGCTGCCGAGCTGCAAGACAAGGTATTGCGGTGT
CTGGACGCGACGGTATTTGACCCGAGTTTGCCCACCCGCTCCATCGTGGA
CTTGGGCCTGGTCAAGAGTGTCCGCGTGAACCCCATACAGGGCGAGATCC
GCCTTTCTCTAGAGTATCCAACCGCCGGGCACCCTCACACGGAAACGGTC
AAAGCGCGCATCTACCAAGCACTACAAGCGGCCACCTCTCGACACACTCA
AGGCCTCCTCCCCTTCTCTCTCCCCCCCTCCCTCACAACCGTCCGCATCG
ACACCCCTGTGCCTCGGCTTACCTCTTCCCCGTCCTCGTCCGTGCCATTG
GGCTCAGGCCTCACGCATGTCCAACATGTTGTTGCCGTTTCATCCTGTAA
AGGAGGGGTGGGGAAGAGCACCGTTGCCGTCAACCTCGCCCTTGCGCTGG
CCAGGCAAGGAAATAGGGTAGGCCTGCTCGATTTAGATATCTATGGACCC
AGTCTACCGACGCTGCTGCATGTAGAAGGTGAGGTGGAGGGATGGAGGGA
GGGAGGGTAGAGGTAGAGGCTTTGCCATACCATCCAGTACAAAAGGGCTC
AGTCTCTTCCCCCCTTTTCCTTCCTCCCTCCCTGCCTCCCTTCCTCCCTC
ACTTCCTCAGACAAGGCAATACGGCCCTCTTCTCGCAACCCAAAATTCAT
CCAGCCCCTTCTCTACCCTTCCTCCGCCTCGTCTTCCTCCCCTTCCTCGC
CCTCCTTCCCCTTGCCCTTCCCCGTGAAGCACCTTTCGTTCGGGCACGTC
AAACCCTCCCCTTCCCTTCCTGGAGCGGGAGGAGGAGAAGCCGCAGTCCT
CCGTGGCCCGTTAGCGAGCAAGGTTGTCAATCAATTGCTTCTCTGCACAG
AATGGGGTGAATTAGACTTCCTCCTTCTTGACTTGCCTCCCGGGACAGGA
GACGTGCAAATAACAGTGAATCAGAGCATGGG back to topprotein sequence of jgi.p|Nanoce1779_2|594040 >mRNA_6179-protein ID=mRNA_6179-protein|Name=jgi.p|Nanoce1779_2|594040|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MFYLVRQRCLSSWCNGARIRPRRLFHVGPSSSSSPSSSLRPSFLFSTRSP
SHCLRALSTGSVKSDIREAAELQDKVLRCLDATVFDPSLPTRSIVDLGLV
KSVRVNPIQGEIRLSLEYPTAGHPHTETVKARIYQALQAATSRHTQGLLP
FSLPPSLTTVRIDTPVPRLTSSPSSSVPLGSGLTHVQHVVAVSSCKGGVG
KSTVAVNLALALARQGNRVGLLDLDIYGPSLPTLLHVEGEVEGWREGG* back to topmRNA from alignment at scaffold_14:721132..722552+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6179 ID=mRNA_6179|Name=jgi.p|Nanoce1779_2|594040|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at scaffold_14:721132..722552+ (Nannochloropsis oceanica)
CAGGGTCACCAGTATGTTCTATCTGGTGCGGCAGCGCTGTCTTTCCTCAT
GGTGCAATGGCGCAAGAATTCGCCCCCGGCGCCTTTTCCATGTCGGACCA
TCATCGTCATCATCACCATCATCGTCCTTGCGGCCGTCCTTCTTATTTTC
CACTCGGTCACCGTCGCACTGTCTCCGCGCGTTGTCCACTGGCAGCGTCA
AAAGCGATATCAGAGAAGCTGCCGAGCTGCAAGACAAGGTATTGCGGTGT
CTGGACGCGACGGTATTTGACCCGAGTTTGCCCACCCGCTCCATCGTGGA
CTTGGGCCTGGTCAAGGTAGGAAGCAAGGGTTGAGGTGGAGGGATCGAGG
GGGGGGAGGGCATCTCGCAAAACAGGCTTGTAATTCTACATATCCTTGTA
CCAGAATTTTACCACCTATCCATGGGTGTAATCTTAGCTAGAGCAGACTC
TAATTGCTAGGTTACAAAGGTCCCCAAAATAAATTCAGATGCCCTCATCC
TCATTTTCCCCCCTTTCTCTTCGGTCCGTTCCCATCCAAACCTGAAACTC
CACAGAGTGTCCGCGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTA
GAGTATCCAACCGCCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCAT
CTACCAAGCACTACAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCC
CCTTCTCTCTCCCCCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTG
CCTCGGCTTACCTCTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCT
CACGCATGTCCAACATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGG
GGAAGAGCACCGTTGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGA
AATAGGGTAGGCCTGCTCGATTTAGATATCTATGGACCCAGTCTACCGAC
GCTGCTGCATGTAGAAGGTGAGGTGGAGGGATGGAGGGAGGGAGGGTAGA
GGTAGAGGCTTTGCCATACCATCCAGTACAAAAGGGCTCAGTCTCTTCCC
CCCTTTTCCTTCCTCCCTCCCTGCCTCCCTTCCTCCCTCACTTCCTCAGA
CAAGGCAATACGGCCCTCTTCTCGCAACCCAAAATTCATCCAGCCCCTTC
TCTACCCTTCCTCCGCCTCGTCTTCCTCCCCTTCCTCGCCCTCCTTCCCC
TTGCCCTTCCCCGTGAAGCACCTTTCGTTCGGGCACGTCAAACCCTCCCC
TTCCCTTCCTGGAGCGGGAGGAGGAGAAGCCGCAGTCCTCCGTGGCCCGT
TAGCGAGCAAGGTTGTCAATCAATTGCTTCTCTGCACAGAATGGGGTGAA
TTAGACTTCCTCCTTCTTGACTTGCCTCCCGGGACAGGAGACGTGCAAAT
AACAGTGAATCAGAGCATGGG back to topCoding sequence (CDS) from alignment at scaffold_14:721132..722552+ >mRNA_6179 ID=mRNA_6179|Name=jgi.p|Nanoce1779_2|594040|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_14:721132..722552+ (Nannochloropsis oceanica)
ATGTTCTATCTGGTGCGGCAGCGCTGTCTTTCCTCATGGTGCAATGGCGC
AAGAATTCGCCCCCGGCGCCTTTTCCATGTCGGACCATCATCGTCATCAT
CACCATCATCGTCCTTGCGGCCGTCCTTCTTATTTTCCACTCGGTCACCG
TCGCACTGTCTCCGCGCGTTGTCCACTGGCAGCGTCAAAAGCGATATCAG
AGAAGCTGCCGAGCTGCAAGACAAGGTATTGCGGTGTCTGGACGCGACGG
TATTTGACCCGAGTTTGCCCACCCGCTCCATCGTGGACTTGGGCCTGGTC
AAGAGTGTCCGCGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTAGA
GTATCCAACCGCCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCATCT
ACCAAGCACTACAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCCCC
TTCTCTCTCCCCCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTGCC
TCGGCTTACCTCTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCTCA
CGCATGTCCAACATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGGGG
AAGAGCACCGTTGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGAAA
TAGGGTAGGCCTGCTCGATTTAGATATCTATGGACCCAGTCTACCGACGC
TGCTGCATGTAGAAGGTGAGGTGGAGGGATGGAGGGAGGGAGGGTAGATG
TTCTATCTGGTGCGGCAGCGCTGTCTTTCCTCATGGTGCAATGGCGCAAG
AATTCGCCCCCGGCGCCTTTTCCATGTCGGACCATCATCGTCATCATCAC
CATCATCGTCCTTGCGGCCGTCCTTCTTATTTTCCACTCGGTCACCGTCG
CACTGTCTCCGCGCGTTGTCCACTGGCAGCGTCAAAAGCGATATCAGAGA
AGCTGCCGAGCTGCAAGACAAGGTATTGCGGTGTCTGGACGCGACGGTAT
TTGACCCGAGTTTGCCCACCCGCTCCATCGTGGACTTGGGCCTGGTCAAG
AGTGTCCGCGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTAGAGTA
TCCAACCGCCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCATCTACC
AAGCACTACAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCCCCTTC
TCTCTCCCCCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTGCCTCG
GCTTACCTCTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCTCACGC
ATGTCCAACATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGGGGAAG
AGCACCGTTGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGAAATAG
GGTAGGCCTGCTCGATTTAGATATCTATGGACCCAGTCTACCGACGCTGC
TGCATGTAGAAGGTGAGGTGGAGGGATGGAGGGAGGGAGGGTAG back to top
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