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Properties
| Property Name | Value |
|---|
| TranscriptId | 594117 |
| Track | FilteredModels2 |
| ProteinId | 594031 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:713199..715684 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6177 ID=mRNA_6177|Name=jgi.p|Nanoce1779_2|594031|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGTGACTTCATGGCACCGTCCTACACAGAGAGT
GCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGATTAG
GTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGGAGGGT
TGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGGAC
ACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAATAA
GGAGTCGACTTTCATCCAGCTCCTAGGCCCCAACCCTGATGCATATGGCC
CATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAAC
CTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGACCTA
TGATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCAG
CCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTGCCT
CTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGCCTT
TGTGCCCTTCACGTTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGC
TATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCC
CTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCT
GGCCGCGGTTGGGGCGGTGCAAGTGGCCTTGGCCTTGACGATTAAGCTTG
CCTTTTTCAAAAATTAAGGAGCAGACGCAATGCATGTAATGTTTACCGCC
GAACACGCACGAGTGACACGAGGTGACGAGGGAAAGAGGAGGAATTCAAG
AAGGAGAGGTGTGAGAGTAGAGGGGGAAGCAGAGGGAAAGAGGGAACCAA
GATGATGAGGAGGAACAGAGAGACGGTAATCCTCGGCATTCGACCCTGTA
CGTGCGAGAGGAAAATATCGACGCGGTATGACAAACACACCCACCCCTTG
GGGTGAGTGAAAGAAGAGCAAGTACGGATGGGAATGGGATTGCGTGGGAT
AGAAAGGAGCAGGAGCCGGTGGAGGAGGATGGAGGGAGGGGAGGATGGAG
GGAGGGAGGGAGGGGAGGAGGGAGAGAGCGAAGGGGGGATCGCCTAGCCC
TTTAATCCTTGAGGATTCGATGCTC back to topprotein sequence of jgi.p|Nanoce1779_2|594031 >mRNA_6177-protein ID=mRNA_6177-protein|Name=jgi.p|Nanoce1779_2|594031|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MSSTNDGSGDFMAPSYTESASAALLRDPETGGGQIRSEATGAGEENQPGG
GGLCGCLSVRYYQPYFDVDTAHVKDRILYAIFPFNKESTFIQLLGPNPDA
YGPFWVATSLIFVIAVVSNLSSYFHFDGEEGSKWTYDFAAVVTCATTIYG
FAAFVPLLLWAALRYINLPLPFIQTIAIYGYSLVAFVPFTFLNFIPASAF
PWLSEAAAAAASVVFLLKALGPVVTEKAPTQAVPFLAAVGAVQVALALTI
KLAFFKN* back to topmRNA from alignment at scaffold_14:713199..715684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6177 ID=mRNA_6177|Name=jgi.p|Nanoce1779_2|594031|organism=Nannochloropsis oceanica|type=mRNA|length=2486bp|location=Sequence derived from alignment at scaffold_14:713199..715684- (Nannochloropsis oceanica)
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGCAAGACTCTCCCCATAAATCCTTTCCTTTCT
CATGGAATTCACAGCAAACCCCCTCATCCTTCCTCCTCCTTCCTTCAGCA
GGTGACTTCATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCT
TCGAGATCCAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGG
CAGGAGAGGAGAATCAACCGGGAGGCGGTACGTGAGGATGGAGGAGAGGA
GTAGGAGTAGGATTAGGAGAATGAGGATGAGGAGGAGGGAACCTTAATTT
CATTCTATCACAGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCA
ACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATCCTCTATG
CCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTAATGGCTCTC
TTTCCCACTCTCCCTCCCTCCCTCTCTTTCTCTCTCCCTCCTCTCCTCCC
CTCATAAGGGCCCTTATTCAACTCCTCTAAAGAGAATCTCACATCGCTCG
TCTCTCGCGCATTATCACAACCCTTGAAAACTCTCATTTCTCCCCTCCCC
GCCCCCCTCTCTTAGCTCCTAGGCCCCAACCCTGATGCATATGGCCCATT
CTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAACCTGA
GCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGTGAGGGAGG
GGGGAAGGGAGGGAGGGAGGGAGGGAGGAGACGAGGGAGTAAGGAGGCAG
GGTTGATTGTACGGGCACGATTCACGTGATGGCCTTCATCATCATGGGCG
CTCACCACAACCCCCCTCCCTTTCTTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTGCAGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCCA
CCACCATCTACGGCTTTGCAGTGCGTGGGGAGAAGAGGGCAGGGAGAGAT
AGATGGAGGGGATGCACAATCTCCGAATGGCCTGTCATGGAAAAAAGTCA
CATCGTATTCACTTCCCGCCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTC
CCTCCCTCCCTCAGGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGT
TACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCTA
CTCCCTCGTTGCCTTTGTGCCCTTCACGGTAAGCTCTCCTTCCCTCCCTC
CTTCCCTCCCTTCTCCCCCCTCCTTTACTCCCTCCTTCTGCCTTGGCCTG
TGACTTGATCCATCGTCCATGGACGACTACTCACTCCTTGCCTGCTTTTA
GCGAAAGCAAGCTCTCCCTCTCTTCCTCCCTCCTTCTCTCCTTTCCCCGG
CTGCCTCAAACAGCTGCTGCTGCTGCTGCCACTGCTTCTATCGTCTTCCT
CCTCTGACATCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCAGTTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGCTATCC
GAAGCTGCTGCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCCCTCGG
TCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCTGGCCG
CGGTTGGGTAAGTAGGAGAGAGGAGAAAGACAGATGGATGGATGGATGGA
TGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGGGATG
GATGGAGGGATTGATGGATGGAGGGATTGATGGATATATTGATGGATGGA
GGGATTGATGGAGGGAGTGTCGATTCAGTTAAAGGATGAGATCTTCAGTC
TAGGACAGTTAGAAATTCACCTCCAAGGTCATCTCCCACATTTTACGCAA
ACCCCTCCCTCCTTCATTCCCTCCCTCCTCCTCTCCCTCCTTCCCTTCCT
CCTTCCCTCCCTCCTTTATTTAGGGCGGTGCAAGTGGCCTTGGCCTTGAC
GATTAAGCTTGCCTTTTTCAAAAATTAAGGAGCAGACGCAATGCATGTAA
TGTTTACCGCCGAACACGCACGAGTGACACGAGGTGACGAGGGAAAGAGG
AGGAATTCAAGAAGGAGAGGTGTGAGAGTAGAGGGGGAAGCAGAGGGAAA
GAGGGAACCAAGATGATGAGGAGGAACAGAGAGACGGTAATCCTCGGCAT
TCGACCCTGTACGTGCGAGAGGAAAATATCGACGCGGTATGACAAACACA
CCCACCCCTTGGGGTGAGTGAAAGAAGAGCAAGTACGGATGGGAATGGGA
TTGCGTGGGATAGAAAGGAGCAGGAGCCGGTGGAGGAGGATGGAGGGAGG
GGAGGATGGAGGGAGGGAGGGAGGGGAGGAGGGAGAGAGCGAAGGGGGGA
TCGCCTAGCCCTTTAATCCTTGAGGATTCGATGCTC back to topCoding sequence (CDS) from alignment at scaffold_14:713199..715684- >mRNA_6177 ID=mRNA_6177|Name=jgi.p|Nanoce1779_2|594031|organism=Nannochloropsis oceanica|type=CDS|length=6192bp|location=Sequence derived from alignment at scaffold_14:713199..715684- (Nannochloropsis oceanica)
GGCGGTGCAAGTGGCCTTGGCCTTGACGATTAAGCTTGCCTTTTTCAAAA
ATTAATTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAA
GCTGCTGCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCCCTCGGTCC
GGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGG
TTGGGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATC
TGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTT
GCCTTTGTGCCCTTCACGGACCTATGATTTCGCGGCAGTGGTCACCTGCG
CCACCACCATCTACGGCTTTGCACTCCTAGGCCCCAACCCTGATGCATAT
GGCCCATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATC
CAACCTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGA
GGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGT
GGACACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCA
ATAAGGAGTCGACTTTCATCCAGGTGACTTCATGGCACCGTCCTACACAG
AGAGTGCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAG
ATTAGGTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGA
TGTCGTCAACAAACGATGGATCAGGGCGGTGCAAGTGGCCTTGGCCTTGA
CGATTAAGCTTGCCTTTTTCAAAAATTAATTTCTCAACTTCATCCCCGCC
TCGGCCTTCCCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGT
CTTCCTCCTCAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACAC
AAGCAGTGCCGTTCCTGGCCGCGGTTGGGCCTTCGTCCCACTCCTCCTCT
GGGCTGCTCTGCGTTACATCAATCTGCCTCTTCCCTTCATCCAGACCATT
GCCATCTACGGCTACTCCCTCGTTGCCTTTGTGCCCTTCACGGACCTATG
ATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCACTC
CTAGGCCCCAACCCTGATGCATATGGCCCATTCTGGGTAGCCACATCATT
AATCTTTGTTATTGCCGTGGTATCCAACCTGAGCTCGTACTTCCACTTTG
ACGGGGAAGAGGGGAGCAAGTGGAGGGTTGTGCGGCTGTCTGTCTGTCCG
GTATTACCAACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCA
TCCTCTATGCCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTG
ACTTCATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCTTCGA
GATCCAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGGCAGG
AGAGGAGAATCAACCGGGAGGCGATGTCGTCAACAAACGATGGATCAGGG
CGGTGCAAGTGGCCTTGGCCTTGACGATTAAGCTTGCCTTTTTCAAAAAT
TAATTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAAGC
TGCTGCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCCCTCGGTCCGG
TCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGGTT
GGGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTG
CCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGC
CTTTGTGCCCTTCACGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCC
ACCACCATCTACGGCTTTGCACTCCTAGGCCCCAACCCTGATGCATATGG
CCCATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCA
ACCTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGAGG
GTTGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGG
ACACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAAT
AAGGAGTCGACTTTCATCCAGGTGACTTCATGGCACCGTCCTACACAGAG
AGTGCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGAT
TAGGTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGATG
TCGTCAACAAACGATGGATCAGGGCGGTGCAAGTGGCCTTGGCCTTGACG
ATTAAGCTTGCCTTTTTCAAAAATTAATTTCTCAACTTCATCCCCGCCTC
GGCCTTCCCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTCT
TCCTCCTCAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAA
GCAGTGCCGTTCCTGGCCGCGGTTGGGCCTTCGTCCCACTCCTCCTCTGG
GCTGCTCTGCGTTACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGC
CATCTACGGCTACTCCCTCGTTGCCTTTGTGCCCTTCACGGACCTATGAT
TTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCACTCCT
AGGCCCCAACCCTGATGCATATGGCCCATTCTGGGTAGCCACATCATTAA
TCTTTGTTATTGCCGTGGTATCCAACCTGAGCTCGTACTTCCACTTTGAC
GGGGAAGAGGGGAGCAAGTGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGT
ATTACCAACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATC
CTCTATGCCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTGAC
TTCATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCTTCGAGA
TCCAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGGCAGGAG
AGGAGAATCAACCGGGAGGCGATGTCGTCAACAAACGATGGATCAGGGCG
GTGCAAGTGGCCTTGGCCTTGACGATTAAGCTTGCCTTTTTCAAAAATTA
ATTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAAGCTG
CTGCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCCCTCGGTCCGGTC
GTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGGTTGG
GCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTGCC
TCTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGCCT
TTGTGCCCTTCACGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCCAC
CACCATCTACGGCTTTGCACTCCTAGGCCCCAACCCTGATGCATATGGCC
CATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAAC
CTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGAGGGT
TGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGGAC
ACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAATAA
GGAGTCGACTTTCATCCAGGTGACTTCATGGCACCGTCCTACACAGAGAG
TGCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGATTA
GGTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGATGTC
GTCAACAAACGATGGATCAGGGCGGTGCAAGTGGCCTTGGCCTTGACGAT
TAAGCTTGCCTTTTTCAAAAATTAATTTCTCAACTTCATCCCCGCCTCGG
CCTTCCCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTCTTC
CTCCTCAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGC
AGTGCCGTTCCTGGCCGCGGTTGGGCCTTCGTCCCACTCCTCCTCTGGGC
TGCTCTGCGTTACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGCCA
TCTACGGCTACTCCCTCGTTGCCTTTGTGCCCTTCACGGACCTATGATTT
CGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCACTCCTAG
GCCCCAACCCTGATGCATATGGCCCATTCTGGGTAGCCACATCATTAATC
TTTGTTATTGCCGTGGTATCCAACCTGAGCTCGTACTTCCACTTTGACGG
GGAAGAGGGGAGCAAGTGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTAT
TACCAACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATCCT
CTATGCCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTGACTT
CATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCTTCGAGATC
CAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGGCAGGAGAG
GAGAATCAACCGGGAGGCGATGTCGTCAACAAACGATGGATCAGGGCGGT
GCAAGTGGCCTTGGCCTTGACGATTAAGCTTGCCTTTTTCAAAAATTAAT
TTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAAGCTGCT
GCTGCTGCTGCTTCTGTTGTCTTCCTCCTCAAGGCCCTCGGTCCGGTCGT
GACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGGTTGGGC
CTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTGCCTC
TTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGCCTTT
GTGCCCTTCACGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCCACCA
CCATCTACGGCTTTGCACTCCTAGGCCCCAACCCTGATGCATATGGCCCA
TTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAACCT
GAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGAGGGTTG
TGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGGACAC
GGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAATAAGG
AGTCGACTTTCATCCAGGTGACTTCATGGCACCGTCCTACACAGAGAGTG
CCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGATTAGG
TCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGATGTCGT
CAACAAACGATGGATCAGGGCGGTGCAAGTGGCCTTGGCCTTGACGATTA
AGCTTGCCTTTTTCAAAAATTAATTTCTCAACTTCATCCCCGCCTCGGCC
TTCCCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTCTTCCT
CCTCAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAG
TGCCGTTCCTGGCCGCGGTTGGGCCTTCGTCCCACTCCTCCTCTGGGCTG
CTCTGCGTTACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGCCATC
TACGGCTACTCCCTCGTTGCCTTTGTGCCCTTCACGGACCTATGATTTCG
CGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCACTCCTAGGC
CCCAACCCTGATGCATATGGCCCATTCTGGGTAGCCACATCATTAATCTT
TGTTATTGCCGTGGTATCCAACCTGAGCTCGTACTTCCACTTTGACGGGG
AAGAGGGGAGCAAGTGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTA
CCAACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATCCTCT
ATGCCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTGACTTCA
TGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCTTCGAGATCCA
GAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGGCAGGAGAGGA
GAATCAACCGGGAGGCGATGTCGTCAACAAACGATGGATCAG back to top
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