jgi.p|Nanoce1779_2|594023, mRNA_6175 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594023
Unique NamemRNA_6175
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_14:703746..704681 -

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Properties
Property NameValue
TranscriptId594109
TrackFilteredModels2
ProteinId594023
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:703746..704681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594023gene_6175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594023mRNA_6175-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6175CDS_6175Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6175 ID=mRNA_6175|Name=jgi.p|Nanoce1779_2|594023|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
CAGGAGAAAGCAGCACCGGCACCTGCACTGCCGCCGGGAGGAGCGGCACG
CCAGGGAAGAGCAACAGCAGCAGCAGCAGCAGCAGTGACAACTTAAGCAG
TAGCAGAGATACTACCATCACTGTACAAGACCAATCATCACGTCCCAAGA
AGACCAACAACAGTGGGATCACTTCCAAATGCTCACAAGGCGGTAGAAGA
GGAAACTACCACCCCCTTCCCCCACCCCCCCTGGCCGAGCAAGACAACCA
CCATCAACAAGACGCACAAACAAGCAGCCTGGCCAATAACCTGGCGGGGA
AAATGAATATCGTCGCCAATCTGGCCTATATCCGCAAGACGCAAGAGGTA
GTAGAGCTCCGCAACCTCTCTACCGACGGTCCACGCTTGAGCAAGGCCCT
CGGGCTGCTAGGAGGGGTGATGGTAGCCACTCACCAATTTTACGGCCTCG
TCTCCTCCTTCTCCTCCCTCCCGTCCTCTTCCCTTGTCCTTCCCCTCCTC
GTCCTCCATCAATCCCTTTCTCTCTTTCTCAGCCTTGCCACAATCCTGCT
AGAATGCCGCTCTGTCCTGTGCTCCCTCCACATGCACAAAAAAACGCGCG
AATACTTCAAATTCCTTTCCTACCTCTGGGGCCGCGGCCTCCTCTATCTC
TTCACCGGCGCCATTCTCTCCCTGCGGTTTCTTCCTTTCTCCCCCACCTC
CTCTTCTCCTTTCTCCTCTTCCTCTTCTCCTCCTCCATTCCCTCCTACGA
CCCTAGTCGACATGCTCTCCTCTCTCTACTTCACCCTCCTTGGCCTTTTC
CTCCTCCTCCTCTCCCTCCACTACCACCGGCGGCTTTCCTCCTCTTCCTC
TTCCTCCTCATCATATTCCCTCTCTTCCTCCTCCCCCTCCCTCCCACCCT
CCCTCCTCCCCCATACCATTCCCACTATCGATGACC
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protein sequence of jgi.p|Nanoce1779_2|594023

>mRNA_6175-protein ID=mRNA_6175-protein|Name=jgi.p|Nanoce1779_2|594023|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MPLCPVLPPHAQKNARILQIPFLPLGPRPPLSLHRRHSLPAVSSFLPHLL
FSFLLFLFSSSIPSYDPSRHALLSLLHPPWPFPPPPLPPLPPAAFLLFLF
LLIIFPLFLLPLPPTLPPPPYHSHYR*
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mRNA from alignment at scaffold_14:703746..704681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6175 ID=mRNA_6175|Name=jgi.p|Nanoce1779_2|594023|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at scaffold_14:703746..704681- (Nannochloropsis oceanica)
CAGGAGAAAGCAGCACCGGCACCTGCACTGCCGCCGGGAGGAGCGGCACG
CCAGGGAAGAGCAACAGCAGCAGCAGCAGCAGCAGTGACAACTTAAGCAG
TAGCAGAGATACTACCATCACTGTACAAGACCAATCATCACGTCCCAAGA
AGACCAACAACAGTGGGATCACTTCCAAATGCTCACAAGGCGGTAGAAGA
GGAAACTACCACCCCCTTCCCCCACCCCCCCTGGCCGAGCAAGACAACCA
CCATCAACAAGACGCACAAACAAGCAGCCTGGCCAATAACCTGGCGGGGA
AAATGAATATCGTCGCCAATCTGGCCTATATCCGCAAGACGCAAGAGGTA
GTAGAGCTCCGCAACCTCTCTACCGACGGTCCACGCTTGAGCAAGGCCCT
CGGGCTGCTAGGAGGGGTGATGGTAGCCACTCACCAATTTTACGGCCTCG
TCTCCTCCTTCTCCTCCCTCCCGTCCTCTTCCCTTGTCCTTCCCCTCCTC
GTCCTCCATCAATCCCTTTCTCTCTTTCTCAGCCTTGCCACAATCCTGCT
AGAATGCCGCTCTGTCCTGTGCTCCCTCCACATGCACAAAAAAACGCGCG
AATACTTCAAATTCCTTTCCTACCTCTGGGGCCGCGGCCTCCTCTATCTC
TTCACCGGCGCCATTCTCTCCCTGCGGTTTCTTCCTTTCTCCCCCACCTC
CTCTTCTCCTTTCTCCTCTTCCTCTTCTCCTCCTCCATTCCCTCCTACGA
CCCTAGTCGACATGCTCTCCTCTCTCTACTTCACCCTCCTTGGCCTTTTC
CTCCTCCTCCTCTCCCTCCACTACCACCGGCGGCTTTCCTCCTCTTCCTC
TTCCTCCTCATCATATTCCCTCTCTTCCTCCTCCCCCTCCCTCCCACCCT
CCCTCCTCCCCCATACCATTCCCACTATCGATGACC
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Coding sequence (CDS) from alignment at scaffold_14:703746..704681-

>mRNA_6175 ID=mRNA_6175|Name=jgi.p|Nanoce1779_2|594023|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_14:703746..704681- (Nannochloropsis oceanica)
ATGCCGCTCTGTCCTGTGCTCCCTCCACATGCACAAAAAAACGCGCGAAT
ACTTCAAATTCCTTTCCTACCTCTGGGGCCGCGGCCTCCTCTATCTCTTC
ACCGGCGCCATTCTCTCCCTGCGGTTTCTTCCTTTCTCCCCCACCTCCTC
TTCTCCTTTCTCCTCTTCCTCTTCTCCTCCTCCATTCCCTCCTACGACCC
TAGTCGACATGCTCTCCTCTCTCTACTTCACCCTCCTTGGCCTTTTCCTC
CTCCTCCTCTCCCTCCACTACCACCGGCGGCTTTCCTCCTCTTCCTCTTC
CTCCTCATCATATTCCCTCTCTTCCTCCTCCCCCTCCCTCCCACCCTCCC
TCCTCCCCCATACCATTCCCACTATCGATGA
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Synonyms
Publications