jgi.p|Nanoce1779_2|594020, mRNA_6174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594020
Unique NamemRNA_6174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_14:701809..703223 +

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Properties
Property NameValue
TranscriptId594106
TrackFilteredModels2
ProteinId594020
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:701809..703223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594020gene_6174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594020mRNA_6174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6174CDS_6174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6174 ID=mRNA_6174|Name=jgi.p|Nanoce1779_2|594020|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
TGTCGCACGCACGCTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCAC
ATTGGCATGAGCAGAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGC
ATCATCTTTTTTAGCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAG
TTGGGAGCCCAACCTCTCTCCACAGCACACAGATCTGCACCCTACAAGCT
CTCTCAAGACCACCTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTT
TCCCTCCTCCTGCTCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGC
CCGCGCGGCAGATCCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCG
TCGTGATCCTCGGTGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTG
GATCTCGTCTGTGTCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGT
GATTGAGATGTATGGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTC
TGCCATACCATACCAATGCTTTCTTGGTCGCTAAAGGAGCCGTTATCGCC
GCCCTCTATGCCAACGACACTGCCGCCCTTGACTACATGGACGTCGCTTT
CGACCGCCAATCGGACGTGTTGAATGAAGAAACAAAAGACATGAGTTACG
CCGAAGTAAGTGAGCGCGTTCAAGGCTGGGTTCGCGAAACTACCGGGCTA
AGCGACAAGAGAGTCAAGCAGGGCCTGGAATTGGGCGAGGTAGAGGAAGC
TGTTCGGGTTTCATTCAAGTACGCGGCGATCCGCTCCGTGTTTGGGACGC
CAATGTTTATGATAAACCAGATTATGGTTCCCGGTTTAGACAGTGAGAGT
GGGTTGCAAGACTGGAAGATGTACCTGGAGCCCTTGTTGGCGCGCGCGGA
ACGCAAAGACTGAGCTTGAGATCTCTCAGTATCCAGGAGTGTCAGAGTAC
GTTTGTTTGTTTGAATCTCATTCTGAATCCTGAGGACAGTGGGGGGGAGA
GTACACGAAAAGACTCGATGCCTGGGGCAAGTGCGGGCGACCGTGCACAG
CGAAGTATTTTTTCGCACACGTGCAGACCCCTCGAAATATATGAAAGTTC
GCCCGTTGGTTTGTGGACAATCAGGAGGGAAAACGATGCAAATGGAGAAT
ATAGATGTGTGTAAATAATTAGGTCAGGAAGTGTTAAGGCGGAGAGCCCG
CACAACGTGTACATACCGCCATTTGTAGGGGAACCAAATGAATTCAGGAC
AGACAAGAAAGAGGATCGGATAAACCTGGACAACGCTCTTTGCTTGACGC
G
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protein sequence of jgi.p|Nanoce1779_2|594020

>mRNA_6174-protein ID=mRNA_6174-protein|Name=jgi.p|Nanoce1779_2|594020|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
METAYAFRLFSLLLLSLLLHLSLVPAARAADPPALPLTASEYSVVILGEP
SSSARVDFFLDLVCVDTKNAWPVIKEVIEMYGRDVQWRFHQFPLPYHTNA
FLVAKGAVIAALYANDTAALDYMDVAFDRQSDVLNEETKDMSYAEVSERV
QGWVRETTGLSDKRVKQGLELGEVEEAVRVSFKYAAIRSVFGTPMFMINQ
IMVPGLDSESGLQDWKMYLEPLLARAERKD*
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mRNA from alignment at scaffold_14:701809..703223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6174 ID=mRNA_6174|Name=jgi.p|Nanoce1779_2|594020|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_14:701809..703223+ (Nannochloropsis oceanica)
TGTCGCACGCACGCTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCAC
ATTGGCATGAGCAGAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGC
ATCATCTTTTTTAGCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAG
TTGGGAGCCCAACCTCTCTCCACAGCACACAGATCTGCACCCTACAAGCT
CTCTCAAGACCACCTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTT
TCCCTCCTCCTGCTCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGC
CCGCGCGGCAGATCCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCG
TCGTGATCCTCGGTGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTG
GATCTCGTCTGTGTCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGT
GATTGAGATGTATGGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTC
TGCCATACCATACCAATGCTTTCTTGGGTGAGTGCTGTTTGCCTCTTGCA
TTTCACAAGCCTCCTCGCCCATCGCGTGAACTCGCAAAGCAAAAATTGAC
TCATATTTTCCTGTCAACTTTCCTTCCTCCCCTCCCTCCAGTCGCTAAAG
GAGCCGTTATCGCCGCCCTCTATGCCAACGACACTGCCGCCCTTGACTAC
ATGGACGTCGCTTTCGACCGCCAATCGGACGTGTTGAATGAAGAAACAAA
AGACATGAGTTACGCCGAAGTAAGTGAGCGCGTTCAAGGCTGGGTTCGCG
AAACTACCGGGCTAAGCGACAAGAGAGTCAAGCAGGGCCTGGAATTGGGC
GAGGTAGAGGAAGCTGTTCGGGTTTCATTCAAGTACGCGGCGATCCGCTC
CGTGTTTGGGACGCCAATGTTTATGATAAACCAGATTATGGTTCCCGGTT
TAGACAGTGAGAGTGGGTTGCAAGACTGGAAGATGTACCTGGAGCCCTTG
TTGGCGCGCGCGGAACGCAAAGACTGAGCTTGAGATCTCTCAGTATCCAG
GAGTGTCAGAGTACGTTTGTTTGTTTGAATCTCATTCTGAATCCTGAGGA
CAGTGGGGGGGAGAGTACACGAAAAGACTCGATGCCTGGGGCAAGTGCGG
GCGACCGTGCACAGCGAAGTATTTTTTCGCACACGTGCAGACCCCTCGAA
ATATATGAAAGTTCGCCCGTTGGTTTGTGGACAATCAGGAGGGAAAACGA
TGCAAATGGAGAATATAGATGTGTGTAAATAATTAGGTCAGGAAGTGTTA
AGGCGGAGAGCCCGCACAACGTGTACATACCGCCATTTGTAGGGGAACCA
AATGAATTCAGGACAGACAAGAAAGAGGATCGGATAAACCTGGACAACGC
TCTTTGCTTGACGCG
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Coding sequence (CDS) from alignment at scaffold_14:701809..703223+

>mRNA_6174 ID=mRNA_6174|Name=jgi.p|Nanoce1779_2|594020|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_14:701809..703223+ (Nannochloropsis oceanica)
ATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGCTCTCCCT
CCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGATCCTCCTG
CCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGGTGAGCCT
TCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTGTCGACAC
AAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTATGGCCGGG
ACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATACCAATGCT
TTCTTGGTCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCAACGACAC
TGCCGCCCTTGACTACATGGACGTCGCTTTCGACCGCCAATCGGACGTGT
TGAATGAAGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGAGCGCGTT
CAAGGCTGGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAGTCAAGCA
GGGCCTGGAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCATTCAAGT
ACGCGGCGATCCGCTCCGTGTTTGGGACGCCAATGTTTATGATAAACCAG
ATTATGGTTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACTGGAAGAT
GTACCTGGAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGAATGGAAA
CCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGCTCTCCCTCCTTCTT
CACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGATCCTCCTGCCTTGCC
CTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGGTGAGCCTTCCTCCA
GCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTGTCGACACAAAAAAT
GCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTATGGCCGGGACGTGCA
ATGGCGCTTTCATCAGTTTCCTCTGCCATACCATACCAATGCTTTCTTGG
TCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCAACGACACTGCCGCC
CTTGACTACATGGACGTCGCTTTCGACCGCCAATCGGACGTGTTGAATGA
AGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGAGCGCGTTCAAGGCT
GGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAGTCAAGCAGGGCCTG
GAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCATTCAAGTACGCGGC
GATCCGCTCCGTGTTTGGGACGCCAATGTTTATGATAAACCAGATTATGG
TTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACTGGAAGATGTACCTG
GAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGA
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Synonyms
Publications