jgi.p|Nanoce1779_2|594019, mRNA_6172 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594019
Unique Name	mRNA_6172
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2256
Alignment location	scaffold_14:699578..701833 -

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Properties


Property Name	Value
TranscriptId	594105
Track	FilteredModels2
ProteinId	594019

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:699578..701833 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594019	gene_6172	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594019	mRNA_6172-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6172	CDS_6172	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:699578..701833-
coding sequence from alignment at scaffold_14:699578..701833-

mRNA sequence

>mRNA_6172 ID=mRNA_6172|Name=jgi.p|Nanoce1779_2|594019|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp
GCTTGCGACGAGCGTGCGTGCGACAATCCCAGGGCAGGGCAGAGGAGGAA
GAAGCTGCAAGGCTCCGTTTGGCCCCGCTTCAGCTCTTCGCGCCATGGCC
TCCCTCTTTTCCTTTTGCCTTCACCTCTCACGCCGCCTCCACACATGCAG
AGCGAACATAACACAAGACGCCCGTAACGAGGCTGGTCGTCTCATTGTCA
AGGGTTGTGTGGGTCAGTCAAAACGGTCCACTGCGTTTGTCGAACTCTGC
TTTTGGCCCTGCTTGTGGTTGAAGACAGGAAGCGGCGATGATCACAAATC
CGTGACCGTGAGCCAACACCACCCTAAATGCCCTAGGTCCCAGGCGCCCC
ACTGCACGACGGACATTGGTGTGGGCGCACTGTGCTGCGACAGGCTGGTA
GCTGGCTTTGCTGCCAGCCGTGAGGAGGGGAAAACATTTCACATTTCTTC
CTTTTCTCGCGCACACCACGACACGTCCTCGCTAACCCTATTCCCTTCAT
GACATGACAACAGCAGGGACTGCCGCCAACACGAGGAGGGCCAGGCACAT
CATTGTCTACTCTTATTGACGACGACAGAAGGGAGGTGATCGACTCTTAG
CATCTGCACCTGCAGCCGCATCAGCAGCCGCACTAGTAGCAGTAGTAGCA
GGCTCGAGCAATAGCAAGAGCGACACTAGCTCCGCTTGTACCAGCAGTAC
TGCCACACCACTGTCACCATGGCTATTCAAGGAGGCTCCACCAGACTTAT
CTCCTCCCTCTCCCTGCTTCTTTCCTTACTCGTCTCCCTTCTCCTCCTGC
CCGACACGGTCGGGAAAAAGACCAACCTCACCGCGTCCTCCATCCCCACC
TCCGACGATGGCTGCTTCTTCGATTATCGCATCCGTCGGTGCGAGCCCGT
GAGTCACTGCCACTACAAGTACCGATTCCTCGACGCCACATTCTCGGAGT
CGTGTCGTTTGAAAGTTCAAAAACCGCGCGTCACGCCATACTACAAGGGC
AAGATCGCTGGAAACCCGGCCGTGATCGCCGCAGGGGCCACTGCCTTGTT
TGGTATGGACATTGCGGCCATCATCTTCACACCATTGCTGCAGAATTTTC
CGATTAGTTTCAATGTTGTCCAGGGGTTCATTCTGTGCCTGGCAGGCGAT
ACGTACTTTCAGATCTTGGAGCAGGGGGGCTTGAGGGGCGTGAAGAAGGT
GGGGGTAAAGGCCTGGCGCGCTGTGAGGTCCGGCTTGATCGGCGCCTTGA
ACAATGGGCTGATCCACTACAGCTACTACAAATACATCGATCGTCGGTTC
CCGTACCACTTATTTACAGAGGAGCGATTCGGGAAGGCCGAGGGGACGTA
CTACAAGCTATGTGTGGCCTGGGCCAAGTATTGGATCGAATGGCCGACCA
TCGGGGTTTATAAGATCGCGTCTATGATGGTTTTGACCGCAGCGTTGGAC
GGAGGGGTAGGGTGGAAGAAGCGCTTTGCCAAGCTGCCGGAGAAGTTTCG
AAAGCGCTTTTTGCTGACGTGGTTGCGGTCTTTGCAAGTGTGGCCGGTGT
ATGACACGATTTTGTATGCCTACGTGCCTGCGAGCCATCGGCCGCTGTTT
AACACCTTCATGTCAATTGCTTGGGGGGGCTACCTGAGCTCGATTTCTCA
ACCGGCGGCGGAGGAGAGTGGGGAGGGAGGTATCGGTGTGTTGGAGGAGT
TGAAGGAAGCCGTGAGGGAGGAGAGGGAGAGACATGTGCGTATGGAGGGT
GGGGAGGAACAGGAGGAAGGGAAGGAGGAGGCACTGGAGCACGATGCATT
GATGGAAGAAGTGTGGCAAGAGGCTAAGGAGGAGGCCGAAAGAAGAAGGA
GGATCATGGCGGGCGGAGGGGAAGAGGAGGAAGGGGAAGAGGAAGAGGAC
GAGGATAAAGAAGAGCTGTAATTGGAGGGCAAGAAGGGAAGATGGAAGAA
AGCTAGGGGAGTGAGGAAGGATGACGTAATTTTATATTTTGCGTACGGAA
CTAAAGGCCTGCAGAGGGGAAGAGAAGAACAGGCAAACAGGAGGGAAAGA
TGACCGTACACACACAACAGAAAAAGAAGAAAAATGAAGTGAAGCAAAGC
TTCAACTAAGGACTCGTAGATGACGCGATGGAGCTCTTTCCTACTCATCT
TGGCCTTCCTCTCAATCCCGTCTTCCTTCGAGAAGAAGAAAGAAAGTAAC
CGTGCACATGTGCTACGTCTATTCTTGCCTTTTCATCTCCTGTACATTGT
CCTCCC

protein sequence of jgi.p|Nanoce1779_2|594019

>mRNA_6172-protein ID=mRNA_6172-protein|Name=jgi.p|Nanoce1779_2|594019|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAIQGGSTRLISSLSLLLSLLVSLLLLPDTVGKKTNLTASSIPTSDDGCF
FDYRIRRCEPVSHCHYKYRFLDATFSESCRLKVQKPRVTPYYKGKIAGNP
AVIAAGATALFGMDIAAIIFTPLLQNFPISFNVVQGFILCLAGDTYFQIL
EQGGLRGVKKVGVKAWRAVRSGLIGALNNGLIHYSYYKYIDRRFPYHLFT
EERFGKAEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGGVGWK
KRFAKLPEKFRKRFLLTWLRSLQVWPVYDTILYAYVPASHRPLFNTFMSI
AWGGYLSSISQPAAEESGEGGIGVLEELKEAVREERERHVRMEGGEEQEE
GKEEALEHDALMEEVWQEAKEEAERRRRIMAGGGEEEEGEEEEDEDKEEL
*

mRNA from alignment at scaffold_14:699578..701833-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6172 ID=mRNA_6172|Name=jgi.p|Nanoce1779_2|594019|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at scaffold_14:699578..701833- (Nannochloropsis oceanica)
GCTTGCGACGAGCGTGCGTGCGACAATCCCAGGGCAGGGCAGAGGAGGAA
GAAGCTGCAAGGCTCCGTTTGGCCCCGCTTCAGCTCTTCGCGCCATGGCC
TCCCTCTTTTCCTTTTGCCTTCACCTCTCACGCCGCCTCCACACATGCAG
AGCGAACATAACACAAGACGCCCGTAACGAGGCTGGTCGTCTCATTGTCA
AGGGTTGTGTGGGTCAGTCAAAACGGTCCACTGCGTTTGTCGAACTCTGC
TTTTGGCCCTGCTTGTGGTTGAAGACAGGAAGCGGCGATGATCACAAATC
CGTGACCGTGAGCCAACACCACCCTAAATGCCCTAGGTCCCAGGCGCCCC
ACTGCACGACGGACATTGGTGTGGGCGCACTGTGCTGCGACAGGCTGGTA
GCTGGCTTTGCTGCCAGCCGTGAGGAGGGGAAAACATTTCACATTTCTTC
CTTTTCTCGCGCACACCACGACACGTCCTCGCTAACCCTATTCCCTTCAT
GACATGACAACAGCAGGGACTGCCGCCAACACGAGGAGGGCCAGGCACAT
CATTGTCTACTCTTATTGACGACGACAGAAGGGAGGTGATCGACTCTTAG
CATCTGCACCTGCAGCCGCATCAGCAGCCGCACTAGTAGCAGTAGTAGCA
GGCTCGAGCAATAGCAAGAGCGACACTAGCTCCGCTTGTACCAGCAGTAC
TGCCACACCACTGTCACCATGGCTATTCAAGGAGGCTCCACCAGACTTAT
CTCCTCCCTCTCCCTGCTTCTTTCCTTACTCGTCTCCCTTCTCCTCCTGC
CCGACACGGTCGGGAAAAAGACCAACCTCACCGCGTCCTCCATCCCCACC
TCCGACGATGGCTGCTTCTTCGATTATCGCATCCGTCGGTGCGAGCCCGT
GAGTCACTGCCACTACAAGTACCGATTCCTCGACGCCACATTCTCGGAGT
CGTGTCGTTTGAAAGTTCAAAAACCGCGCGTCACGCCATACTACAAGGGC
AAGATCGCTGGAAACCCGGCCGTGATCGCCGCAGGGGCCACTGCCTTGTT
TGGTATGGACATTGCGGCCATCATCTTCACACCATTGCTGCAGAATTTTC
CGATTAGTTTCAATGTTGTCCAGGGGTTCATTCTGTGCCTGGCAGGCGAT
ACGTACTTTCAGATCTTGGAGCAGGGGGGCTTGAGGGGCGTGAAGAAGGT
GGGGGTAAAGGCCTGGCGCGCTGTGAGGTCCGGCTTGATCGGCGCCTTGA
ACAATGGGCTGATCCACTACAGCTACTACAAATACATCGATCGTCGGTTC
CCGTACCACTTATTTACAGAGGAGCGATTCGGGAAGGCCGAGGGGACGTA
CTACAAGCTATGTGTGGCCTGGGCCAAGTATTGGATCGAATGGCCGACCA
TCGGGGTTTATAAGATCGCGTCTATGATGGTTTTGACCGCAGCGTTGGAC
GGAGGGGTAGGGTGGAAGAAGCGCTTTGCCAAGCTGCCGGAGAAGTTTCG
AAAGCGCTTTTTGCTGACGTGGTTGCGGTCTTTGCAAGTGTGGCCGGTGT
ATGACACGATTTTGTATGCCTACGTGCCTGCGAGCCATCGGCCGCTGTTT
AACACCTTCATGTCAATTGCTTGGGGGGGCTACCTGAGCTCGATTTCTCA
ACCGGCGGCGGAGGAGAGTGGGGAGGGAGGTATCGGTGTGTTGGAGGAGT
TGAAGGAAGCCGTGAGGGAGGAGAGGGAGAGACATGTGCGTATGGAGGGT
GGGGAGGAACAGGAGGAAGGGAAGGAGGAGGCACTGGAGCACGATGCATT
GATGGAAGAAGTGTGGCAAGAGGCTAAGGAGGAGGCCGAAAGAAGAAGGA
GGATCATGGCGGGCGGAGGGGAAGAGGAGGAAGGGGAAGAGGAAGAGGAC
GAGGATAAAGAAGAGCTGTAATTGGAGGGCAAGAAGGGAAGATGGAAGAA
AGCTAGGGGAGTGAGGAAGGATGACGTAATTTTATATTTTGCGTACGGAA
CTAAAGGCCTGCAGAGGGGAAGAGAAGAACAGGCAAACAGGAGGGAAAGA
TGACCGTACACACACAACAGAAAAAGAAGAAAAATGAAGTGAAGCAAAGC
TTCAACTAAGGACTCGTAGATGACGCGATGGAGCTCTTTCCTACTCATCT
TGGCCTTCCTCTCAATCCCGTCTTCCTTCGAGAAGAAGAAAGAAAGTAAC
CGTGCACATGTGCTACGTCTATTCTTGCCTTTTCATCTCCTGTACATTGT
CCTCCC

Coding sequence (CDS) from alignment at scaffold_14:699578..701833-

>mRNA_6172 ID=mRNA_6172|Name=jgi.p|Nanoce1779_2|594019|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at scaffold_14:699578..701833- (Nannochloropsis oceanica)
ATGGCTATTCAAGGAGGCTCCACCAGACTTATCTCCTCCCTCTCCCTGCT
TCTTTCCTTACTCGTCTCCCTTCTCCTCCTGCCCGACACGGTCGGGAAAA
AGACCAACCTCACCGCGTCCTCCATCCCCACCTCCGACGATGGCTGCTTC
TTCGATTATCGCATCCGTCGGTGCGAGCCCGTGAGTCACTGCCACTACAA
GTACCGATTCCTCGACGCCACATTCTCGGAGTCGTGTCGTTTGAAAGTTC
AAAAACCGCGCGTCACGCCATACTACAAGGGCAAGATCGCTGGAAACCCG
GCCGTGATCGCCGCAGGGGCCACTGCCTTGTTTGGTATGGACATTGCGGC
CATCATCTTCACACCATTGCTGCAGAATTTTCCGATTAGTTTCAATGTTG
TCCAGGGGTTCATTCTGTGCCTGGCAGGCGATACGTACTTTCAGATCTTG
GAGCAGGGGGGCTTGAGGGGCGTGAAGAAGGTGGGGGTAAAGGCCTGGCG
CGCTGTGAGGTCCGGCTTGATCGGCGCCTTGAACAATGGGCTGATCCACT
ACAGCTACTACAAATACATCGATCGTCGGTTCCCGTACCACTTATTTACA
GAGGAGCGATTCGGGAAGGCCGAGGGGACGTACTACAAGCTATGTGTGGC
CTGGGCCAAGTATTGGATCGAATGGCCGACCATCGGGGTTTATAAGATCG
CGTCTATGATGGTTTTGACCGCAGCGTTGGACGGAGGGGTAGGGTGGAAG
AAGCGCTTTGCCAAGCTGCCGGAGAAGTTTCGAAAGCGCTTTTTGCTGAC
GTGGTTGCGGTCTTTGCAAGTGTGGCCGGTGTATGACACGATTTTGTATG
CCTACGTGCCTGCGAGCCATCGGCCGCTGTTTAACACCTTCATGTCAATT
GCTTGGGGGGGCTACCTGAGCTCGATTTCTCAACCGGCGGCGGAGGAGAG
TGGGGAGGGAGGTATCGGTGTGTTGGAGGAGTTGAAGGAAGCCGTGAGGG
AGGAGAGGGAGAGACATGTGCGTATGGAGGGTGGGGAGGAACAGGAGGAA
GGGAAGGAGGAGGCACTGGAGCACGATGCATTGATGGAAGAAGTGTGGCA
AGAGGCTAAGGAGGAGGCCGAAAGAAGAAGGAGGATCATGGCGGGCGGAG
GGGAAGAGGAGGAAGGGGAAGAGGAAGAGGACGAGGATAAAGAAGAGCTG
TAA

Synonyms

Publications