jgi.p|Nanoce1779_2|593995, mRNA_6167 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593995
Unique Name	mRNA_6167
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1905
Alignment location	scaffold_14:682368..684921 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594081
Track	FilteredModels2
ProteinId	593995

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:682368..684921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593995	gene_6167	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593995	mRNA_6167-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6167	CDS_6167	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:682368..684921+
coding sequence from alignment at scaffold_14:682368..684921+

mRNA sequence

>mRNA_6167 ID=mRNA_6167|Name=jgi.p|Nanoce1779_2|593995|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
TCCCCTCCCTGCCGTAATCTTGGCCCTCGGGCAGTCTACTTCCGCCAATT
GTGTAGCAGCAGGTCATTTCGGCTTGAGGGCGTCCGCTCGTCGCGGGTGC
AGTGGTATCTTGCGTTTAACTTGACAAGCGAGGCCCACGCTACATGCCTT
GGCTCTCACCCTTTGAGTTTCTTCTTGCCTGTATCCATCTATCTTTCCTC
TTCAACTTGTACAATGTGTGGTTTTACCTCTAACCCCCTCAACGAAAAAT
GGAAGACAGCAAGTAGAAGGAGATCATCGCAAACCCAAGACTTGAAGGCC
TGCAGCCACGGACAACCCACCTCCTCCGATGGATCGAATCGACGCGATGC
AACACGACAAGCAGCAGTATCGCGTCTTGACCCGTGGTCTGCCTGTGGTA
CCATTATCGGAGGGCTGTTGATGCACACGAAAGCCCAGCTGCCGTCCGAT
TGATTGAAGTGAAGCCTGCCAAGCTGCCAAGTAGCTCTACAGCAATTGAG
GACGTGCCCTATTTTCACCCTCCCTCAACCTATCCCCTCCCTACACGATT
ATCGCAGGTCTCCTCCACAACCACCTCCACTACATTATCTTAAGATGCGT
ACCATCTCCTTCCTGGCCCTCGCCACCCCCGCCCTTGCGTTCATGACCCC
CATGCCTGCCACCGAGCGCAACGTCATGCGCATGTCCGCCGAGCAGCCCA
AGTCGCCCCTCACCGTCAGCAACTTCGTCAAGGGCTTCGCCACTGCCTCC
ATGTTTTTCAACTTCGCTACCATGCCCTTGACTTCCATGCCCGAGGCCGC
TATGGCCAAGGCCGGCGAGGGCCCCAAGCAGTCTGTGTTCGGCCTGGGAG
GCGATGCCGCGTCTTCTCCCTTTGTCGAGGATACACCCACTTACTCTCCT
TACTCCCCCTACGGCACGGGCGAGAACGCCCTGTTCAAGCCGCTCAACGA
CGAAGACGTGAAGTTCTACACGGCCAAGGTGACCGAGTCCAAGAAGCGCG
TCGATAAGATTGCCAAGTACCTGGAGAAGAAGCAGTGGGAGGAGGTGCGC
ACTGAGCTGACCCGCCAGATGTACGACCTGCGCCGTGCAGGCGGGAAGCT
GGCTGAGAACAAGCAGAGCCCCGAGGCGTCCAAGGCCCTCAAGTCGCTCT
TCCAGGACATTGAGGATTTGACCGTAGCCAGCCGACGTAAGCAGATCGAC
TTGTCCCAGGACGCGTACTCCCGAGCTCAGGCGGACTTTGATGCGTTCTT
GAAGGCCATCTAAGCAGGGGGGGGTGCGTGTGATCGAAGGAGGGAGGAGG
TTGTGATGTGAGGAGGAGGGAAGAGGTGGAGGATGACAGGACGGGCGTCT
CTGTGTGGAGTATCCTTTGTGTTTGTCAGGTCTGTGTGTGTCATGTGTTT
TACCCCGTTCCTATTTGTCTGTATGGGAAGCCTGGATTCAGGAATGGTAG
CCACAGAACGAAGGGGGGGGATATGGGAGGGAGGGAAGGAGGAAGGTTTA
GAGTAAGGAGCGAGGACCAGAGTCCTAGGAAAGAGGAAGAGAGGATTAAA
CAAACGAACAAACGAACGATTCAGCCTATCATCATTTCTATGTGGCTAAT
AAATTTATTATATTATTTTTGTATACACACATGTATATGTTCAACACGCA
AGGGCAGATGACGGTGCCTCGCGGCCTCACGTGTGAAGCATCGCGTGGGT
GGAGGTTGCTGGTTTGTGATGGTATATGTATATCGGATTGAAGTGCCCGC
CACGGCAGTCAGCAGACTCCATCCCCTTGCAGGACGTGCGTTACACTCCC
TCATCGTCGAGGTGCTGAGCAAGTCCTACTCCTTTCAGTTGCCCTTCGCT
CCCATCCATGCGGAAGCACCCGCACGCCTACTTTTGTTCTGGGCTACTTT
CCTGC

protein sequence of jgi.p|Nanoce1779_2|593995

>mRNA_6167-protein ID=mRNA_6167-protein|Name=jgi.p|Nanoce1779_2|593995|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MRTISFLALATPALAFMTPMPATERNVMRMSAEQPKSPLTVSNFVKGFAT
ASMFFNFATMPLTSMPEAAMAKAGEGPKQSVFGLGGDAASSPFVEDTPTY
SPYSPYGTGENALFKPLNDEDVKFYTAKVTESKKRVDKIAKYLEKKQWEE
VRTELTRQMYDLRRAGGKLAENKQSPEASKALKSLFQDIEDLTVASRRKQ
IDLSQDAYSRAQADFDAFLKAI*

mRNA from alignment at scaffold_14:682368..684921+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6167 ID=mRNA_6167|Name=jgi.p|Nanoce1779_2|593995|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp|location=Sequence derived from alignment at scaffold_14:682368..684921+ (Nannochloropsis oceanica)
TCCCCTCCCTGCCGTAATCTTGGCCCTCGGGCAGTCTACTTCCGCCAATT
GTGTAGCAGCAGGTCATTTCGGCTTGAGGGCGTCCGCTCGTCGCGGGTGC
AGTGGTATCTTGCGTTTAACTTGACAAGCGAGGCCCACGCTACATGCCTT
GGCTCTCACCCTTTGAGTTTCTTCTTGCCTGTATCCATCTATCTTTCCTC
TTCAACTTGTACAATGTGTGGTTTTACCTCTAACCCCCTCAACGAAAAAT
GGAAGACAGCAAGTAGAAGGAGATCATCGCAAACCCAAGACTTGAAGGCC
TGCAGCCACGGACAACCCACCTCCTCCGATGGATCGAATCGACGCGATGC
AACACGACAAGCAGCAGTATCGCGTCTTGACCCGTGGTCTGCCTGTGGTA
CCATTATCGGAGGGCTGTTGATGCACACGAAAGCCCAGCTGCCGTCCGAT
TGATTGAAGTGAAGCCTGCCAAGCTGCCAAGTAGCTCTACAGCAATTGAG
GACGTGCCCTATTTTCACCCTCCCTCAACCTATCCCCTCCCTACACGATT
ATCGCAGGTCTCCTCCACAACCACCTCCACTACATTATCTTAAGATGCGT
ACCATCTCCTTCCTGGCCCTCGCCACCCCCGCCCTTGCGTTCATGACCCC
CATGCCTGCCACCGAGCGCAAGTAAGTACTTCTCCCTGCCTTCCTCGTTC
CGTCGACCAATCTTGGATGCCTTGCATCTTGCTTGCGTTTTCCCCCCCCT
CTCTTTCTCTATTCATTCATGTGATTGAATATCAGATCATCCAGGATATT
GCTGCGATAGCCACCGTGCTCCGCTTGTTCACCCAAGAGGGATCGCAACG
TCCTCATCTTCCCTTCTCTCCCCTCCCCCCTTCTCCAGCGTCATGCGCAT
GTCCGCCGAGCAGCCCAAGTCGCCCCTCACCGTCAGCAACTTCGTCAAGG
GCTTCGCCACTGCCTCCATGTTTTTCAACTTCGCTACCATGCCCTTGACT
TCCATGCCCGAGGCCGCTATGGCCAAGGCCGGCGAGGGCCCCAAGCAGTC
TGTGTTCGGCCTGGGAGGCGATGCCGCGTCTTCTCCCTTTGTCGAGGATA
CACCCACTTACTCTCCTTACTGTGAGTTGCCTCCTTTTCGCTTTCATTTT
TAGATGTGGAAGGGGGGGAGAGAGGGTGGTGCGTGAGGATCAGCTCTGGC
CATTGCGGAGATGGTCGAGGTTGAGACCGACTTTCTTCATTTTGGCTCGG
GCTGTGACGCCGTAGCAGTCTAGTCTCCTCCCGAATCCTTTGTAGTAAGG
AATTGGAGGCTGTGCCTGCAATACCGTCAAAATTACCCCCCTCACCCCTC
CTCTCTTTCCTCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCAGCCCCCTACGGCACGGGCGAGAACGCCCTG
TTCAAGCCGCTCAACGACGAAGACGTGAAGTTCTACACGGCCAAGGTGAC
CGAGTCCAAGAAGCGCGTCGATAAGATTGCCAAGTACCTGGAGAAGAAGC
AGGTCTGTAAATCCCTCCCTCCCGCCCTCCCTCCCGCCCTTCTCTCTTTT
TCCACCGACCAAGGACTCTTCTCCCTCAGTCCTCGACTCATCCATCCCCT
CACACACACATCCACACATACACCCCCCACGCAGTGGGAGGAGGTGCGCA
CTGAGCTGACCCGCCAGATGTACGACCTGCGCCGTGCAGGCGGGAAGCTG
GCTGAGAACAAGCAGAGCCCCGAGGCGTCCAAGGCCCTCAAGTCGCTCTT
CCAGGACATTGAGGATTTGACCGTAGCCAGCCGACGTAAGCAGATCGACT
TGTCCCAGGACGCGTACTCCCGAGCTCAGGCGGACTTTGATGCGTTCTTG
AAGGCCATCTAAGCAGGGGGGGGTGCGTGTGATCGAAGGAGGGAGGAGGT
TGTGATGTGAGGAGGAGGGAAGAGGTGGAGGATGACAGGACGGGCGTCTC
TGTGTGGAGTATCCTTTGTGTTTGTCAGGTCTGTGTGTGTCATGTGTTTT
ACCCCGTTCCTATTTGTCTGTATGGGAAGCCTGGATTCAGGAATGGTAGC
CACAGAACGAAGGGGGGGGATATGGGAGGGAGGGAAGGAGGAAGGTTTAG
AGTAAGGAGCGAGGACCAGAGTCCTAGGAAAGAGGAAGAGAGGATTAAAC
AAACGAACAAACGAACGATTCAGCCTATCATCATTTCTATGTGGCTAATA
AATTTATTATATTATTTTTGTATACACACATGTATATGTTCAACACGCAA
GGGCAGATGACGGTGCCTCGCGGCCTCACGTGTGAAGCATCGCGTGGGTG
GAGGTTGCTGGTTTGTGATGGTATATGTATATCGGATTGAAGTGCCCGCC
ACGGCAGTCAGCAGACTCCATCCCCTTGCAGGACGTGCGTTACACTCCCT
CATCGTCGAGGTGCTGAGCAAGTCCTACTCCTTTCAGTTGCCCTTCGCTC
CCATCCATGCGGAAGCACCCGCACGCCTACTTTTGTTCTGGGCTACTTTC
CTGC

Coding sequence (CDS) from alignment at scaffold_14:682368..684921+

>mRNA_6167 ID=mRNA_6167|Name=jgi.p|Nanoce1779_2|593995|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_14:682368..684921+ (Nannochloropsis oceanica)
ATGCGTACCATCTCCTTCCTGGCCCTCGCCACCCCCGCCCTTGCGTTCAT
GACCCCCATGCCTGCCACCGAGCGCAACGTCATGCGCATGTCCGCCGAGC
AGCCCAAGTCGCCCCTCACCGTCAGCAACTTCGTCAAGGGCTTCGCCACT
GCCTCCATGTTTTTCAACTTCGCTACCATGCCCTTGACTTCCATGCCCGA
GGCCGCTATGGCCAAGGCCGGCGAGGGCCCCAAGCAGTCTGTGTTCGGCC
TGGGAGGCGATGCCGCGTCTTCTCCCTTTGTCGAGGATACACCCACTTAC
TCTCCTTACTCCCCCTACGGCACGGGCGAGAACGCCCTGTTCAAGCCGCT
CAACGACGAAGACGTGAAGTTCTACACGGCCAAGGTGACCGAGTCCAAGA
AGCGCGTCGATAAGATTGCCAAGTACCTGGAGAAGAAGCAGTGGGAGGAG
GTGCGCACTGAGCTGACCCGCCAGATGTACGACCTGCGCCGTGCAGGCGG
GAAGCTGGCTGAGAACAAGCAGAGCCCCGAGGCGTCCAAGGCCCTCAAGT
CGCTCTTCCAGGACATTGAGGATTTGACCGTAGCCAGCCGACGTAAGCAG
ATCGACTTGTCCCAGGACGCGTACTCCCGAGCTCAGGCGGACTTTGATGC
GTTCTTGAAGGCCATCTAAATGCGTACCATCTCCTTCCTGGCCCTCGCCA
CCCCCGCCCTTGCGTTCATGACCCCCATGCCTGCCACCGAGCGCAACGTC
ATGCGCATGTCCGCCGAGCAGCCCAAGTCGCCCCTCACCGTCAGCAACTT
CGTCAAGGGCTTCGCCACTGCCTCCATGTTTTTCAACTTCGCTACCATGC
CCTTGACTTCCATGCCCGAGGCCGCTATGGCCAAGGCCGGCGAGGGCCCC
AAGCAGTCTGTGTTCGGCCTGGGAGGCGATGCCGCGTCTTCTCCCTTTGT
CGAGGATACACCCACTTACTCTCCTTACTCCCCCTACGGCACGGGCGAGA
ACGCCCTGTTCAAGCCGCTCAACGACGAAGACGTGAAGTTCTACACGGCC
AAGGTGACCGAGTCCAAGAAGCGCGTCGATAAGATTGCCAAGTACCTGGA
GAAGAAGCAGTGGGAGGAGGTGCGCACTGAGCTGACCCGCCAGATGTACG
ACCTGCGCCGTGCAGGCGGGAAGCTGGCTGAGAACAAGCAGAGCCCCGAG
GCGTCCAAGGCCCTCAAGTCGCTCTTCCAGGACATTGAGGATTTGACCGT
AGCCAGCCGACGTAAGCAGATCGACTTGTCCCAGGACGCGTACTCCCGAG
CTCAGGCGGACTTTGATGCGTTCTTGAAGGCCATCTAAATGCGTACCATC
TCCTTCCTGGCCCTCGCCACCCCCGCCCTTGCGTTCATGACCCCCATGCC
TGCCACCGAGCGCAACGTCATGCGCATGTCCGCCGAGCAGCCCAAGTCGC
CCCTCACCGTCAGCAACTTCGTCAAGGGCTTCGCCACTGCCTCCATGTTT
TTCAACTTCGCTACCATGCCCTTGACTTCCATGCCCGAGGCCGCTATGGC
CAAGGCCGGCGAGGGCCCCAAGCAGTCTGTGTTCGGCCTGGGAGGCGATG
CCGCGTCTTCTCCCTTTGTCGAGGATACACCCACTTACTCTCCTTACTCC
CCCTACGGCACGGGCGAGAACGCCCTGTTCAAGCCGCTCAACGACGAAGA
CGTGAAGTTCTACACGGCCAAGGTGACCGAGTCCAAGAAGCGCGTCGATA
AGATTGCCAAGTACCTGGAGAAGAAGCAGTGGGAGGAGGTGCGCACTGAG
CTGACCCGCCAGATGTACGACCTGCGCCGTGCAGGCGGGAAGCTGGCTGA
GAACAAGCAGAGCCCCGAGGCGTCCAAGGCCCTCAAGTCGCTCTTCCAGG
ACATTGAGGATTTGACCGTAGCCAGCCGACGTAAGCAGATCGACTTGTCC
CAGGACGCGTACTCCCGAGCTCAGGCGGACTTTGATGCGTTCTTGAAGGC
CATCTAAATGCGTACCATCTCCTTCCTGGCCCTCGCCACCCCCGCCCTTG
CGTTCATGACCCCCATGCCTGCCACCGAGCGCAACGTCATGCGCATGTCC
GCCGAGCAGCCCAAGTCGCCCCTCACCGTCAGCAACTTCGTCAAGGGCTT
CGCCACTGCCTCCATGTTTTTCAACTTCGCTACCATGCCCTTGACTTCCA
TGCCCGAGGCCGCTATGGCCAAGGCCGGCGAGGGCCCCAAGCAGTCTGTG
TTCGGCCTGGGAGGCGATGCCGCGTCTTCTCCCTTTGTCGAGGATACACC
CACTTACTCTCCTTACTCCCCCTACGGCACGGGCGAGAACGCCCTGTTCA
AGCCGCTCAACGACGAAGACGTGAAGTTCTACACGGCCAAGGTGACCGAG
TCCAAGAAGCGCGTCGATAAGATTGCCAAGTACCTGGAGAAGAAGCAGTG
GGAGGAGGTGCGCACTGAGCTGACCCGCCAGATGTACGACCTGCGCCGTG
CAGGCGGGAAGCTGGCTGAGAACAAGCAGAGCCCCGAGGCGTCCAAGGCC
CTCAAGTCGCTCTTCCAGGACATTGAGGATTTGACCGTAGCCAGCCGACG
TAAGCAGATCGACTTGTCCCAGGACGCGTACTCCCGAGCTCAGGCGGACT
TTGATGCGTTCTTGAAGGCCATCTAA

Synonyms

Publications