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Properties
| Property Name | Value |
|---|
| TranscriptId | 594078 |
| Track | FilteredModels2 |
| ProteinId | 593992 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:679216..680518 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
AGGGGTACTGGCAGGATGGGGAGCGAGGTTTGTGGCGGCGGTGGTGTTTG
GTGTGTGCCAGGCGTTGCCCCTTCTGCACGTCATGCACGACTCATCCCAC
CTGGCGTTCGGGAACACGGAGAGGTGGTGGCAAATGGGGGGGAGGCTGGC
CATGGATTTCTTCGCGGGGGCGAACATGACGAGTTGGCACAATCAGCACG
TGATAGGGCATCACATTTATACGAATGTGTTCATGGCTGACCCGGACTTG
CCCGATAAGAGCGCTGGGGACCCGAGGCGGCTGGTTAAGAAGCAGGCATG
GGAGGGGATGTACAAGTGGCAGCACCTCTACTTGCCACCTTTGTACGGCA
TCCTGGGCATCAAGTTCCGGGTGCAAGACGTGATGGAGACGTACGGGAGC
GGGTCGAATGGGCCGGTGAGGGTTAACCCCTTGAGCCCCTGGCAGTGGGG
GGAGATGATCTTCACCAAGCTCTTCTGGTTCGGCTGGCGCGTGGTGTTCC
CGCTCATGTCGGCAAGCTTTCGGACGAGCATGGCCACGTTCTGGCCCTTG
TTCTTCGTGAGTGAGTTCATGACGGGATACTTCCTGGCGTTCAATTTCCA
GGTGTCACACGTCTCGTCCGAGTGCGATTATCCGCTGGGCGAGGCGCCGA
GGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGGAAGGAAGGTATCAAGGAC
GAATGGGCCGTGAGCCAGGTGAAGAGTAGCGTGGACTACGCCCACAATAA
CGCTTTGACGACCTTCCTGTGCGGGGCTTTGAACTACCAGGTGACGCACC
ACCTGTTCCCCACTGTAAGTCAGTACCACTACCCCAAGATCGCGCCCATC
ATCCAGGAGGTATGCAAGGAGTTTAACGTCGACTACAAGGTCCTGCCCGA
TTTTGTGACGGCGTTCCATGCGCACATTGCGCATTTGAAGGCCTTGGGAG
AGAGGGGCGAGGCGGCGGAGGTGCACATGGGTTAGGAAGCTCTCTGACGG
CCTCGGTAGATGAGGGATTGAAGTCGAGAGCGGCATGGTTTCCGTGAAGG
GTTGATGGGGATTTGTGAAGAAATGACGATTGAGGGGAAAAAGTGGCGGG
GAAAGAAATAGAAGAGTGCAATAGAAGAGAGAGTGCATACGAGAAGACGA
GAGCGATGGCGTCGCGTTTGTGATTTGTCGCGTCCTTGAGGATGTTTCAG
GAAGTTATCTTGTGTGTTTCACCGTTTTATTATTATGCTGACAATATATG
ATAGTGCGAAAGAGTAAGGCCGACCAAAAGAAGCAACATTTATGAGAAAT
TAA back to topprotein sequence of jgi.p|Nanoce1779_2|593992 >mRNA_6165-protein ID=mRNA_6165-protein|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MHDSSHLAFGNTERWWQMGGRLAMDFFAGANMTSWHNQHVIGHHIYTNVF
MADPDLPDKSAGDPRRLVKKQAWEGMYKWQHLYLPPLYGILGIKFRVQDV
METYGSGSNGPVRVNPLSPWQWGEMIFTKLFWFGWRVVFPLMSASFRTSM
ATFWPLFFVSEFMTGYFLAFNFQVSHVSSECDYPLGEAPREEAVEGSAGG
KEGIKDEWAVSQVKSSVDYAHNNALTTFLCGALNYQVTHHLFPTVSQYHY
PKIAPIIQEVCKEFNVDYKVLPDFVTAFHAHIAHLKALGERGEAAEVHMG
* back to topmRNA from alignment at scaffold_14:679216..680518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at scaffold_14:679216..680518- (Nannochloropsis oceanica)
AGGGGTACTGGCAGGATGGGGAGCGAGGTTTGTGGCGGCGGTGGTGTTTG
GTGTGTGCCAGGCGTTGCCCCTTCTGCACGTCATGCACGACTCATCCCAC
CTGGCGTTCGGGAACACGGAGAGGTGGTGGCAAATGGGGGGGAGGCTGGC
CATGGATTTCTTCGCGGGGGCGAACATGACGAGTTGGCACAATCAGCACG
TGATAGGGCATCACATTTATACGAATGTGTTCATGGCTGACCCGGACTTG
CCCGATAAGAGCGCTGGGGACCCGAGGCGGCTGGTTAAGAAGCAGGCATG
GGAGGGGATGTACAAGTGGCAGCACCTCTACTTGCCACCTTTGTACGGCA
TCCTGGGCATCAAGTTCCGGGTGCAAGACGTGATGGAGACGTACGGGAGC
GGGTCGAATGGGCCGGTGAGGGTTAACCCCTTGAGCCCCTGGCAGTGGGG
GGAGATGATCTTCACCAAGCTCTTCTGGTTCGGCTGGCGCGTGGTGTTCC
CGCTCATGTCGGCAAGCTTTCGGACGAGCATGGCCACGTTCTGGCCCTTG
TTCTTCGTGAGTGAGTTCATGACGGGATACTTCCTGGCGTTCAATTTCCA
GGTGTCACACGTCTCGTCCGAGTGCGATTATCCGCTGGGCGAGGCGCCGA
GGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGGAAGGAAGGTATCAAGGAC
GAATGGGCCGTGAGCCAGGTGAAGAGTAGCGTGGACTACGCCCACAATAA
CGCTTTGACGACCTTCCTGTGCGGGGCTTTGAACTACCAGGTGACGCACC
ACCTGTTCCCCACTGTAAGTCAGTACCACTACCCCAAGATCGCGCCCATC
ATCCAGGAGGTATGCAAGGAGTTTAACGTCGACTACAAGGTCCTGCCCGA
TTTTGTGACGGCGTTCCATGCGCACATTGCGCATTTGAAGGCCTTGGGAG
AGAGGGGCGAGGCGGCGGAGGTGCACATGGGTTAGGAAGCTCTCTGACGG
CCTCGGTAGATGAGGGATTGAAGTCGAGAGCGGCATGGTTTCCGTGAAGG
GTTGATGGGGATTTGTGAAGAAATGACGATTGAGGGGAAAAAGTGGCGGG
GAAAGAAATAGAAGAGTGCAATAGAAGAGAGAGTGCATACGAGAAGACGA
GAGCGATGGCGTCGCGTTTGTGATTTGTCGCGTCCTTGAGGATGTTTCAG
GAAGTTATCTTGTGTGTTTCACCGTTTTATTATTATGCTGACAATATATG
ATAGTGCGAAAGAGTAAGGCCGACCAAAAGAAGCAACATTTATGAGAAAT
TAA back to topCoding sequence (CDS) from alignment at scaffold_14:679216..680518- >mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_14:679216..680518- (Nannochloropsis oceanica)
ATGCACGACTCATCCCACCTGGCGTTCGGGAACACGGAGAGGTGGTGGCA
AATGGGGGGGAGGCTGGCCATGGATTTCTTCGCGGGGGCGAACATGACGA
GTTGGCACAATCAGCACGTGATAGGGCATCACATTTATACGAATGTGTTC
ATGGCTGACCCGGACTTGCCCGATAAGAGCGCTGGGGACCCGAGGCGGCT
GGTTAAGAAGCAGGCATGGGAGGGGATGTACAAGTGGCAGCACCTCTACT
TGCCACCTTTGTACGGCATCCTGGGCATCAAGTTCCGGGTGCAAGACGTG
ATGGAGACGTACGGGAGCGGGTCGAATGGGCCGGTGAGGGTTAACCCCTT
GAGCCCCTGGCAGTGGGGGGAGATGATCTTCACCAAGCTCTTCTGGTTCG
GCTGGCGCGTGGTGTTCCCGCTCATGTCGGCAAGCTTTCGGACGAGCATG
GCCACGTTCTGGCCCTTGTTCTTCGTGAGTGAGTTCATGACGGGATACTT
CCTGGCGTTCAATTTCCAGGTGTCACACGTCTCGTCCGAGTGCGATTATC
CGCTGGGCGAGGCGCCGAGGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGG
AAGGAAGGTATCAAGGACGAATGGGCCGTGAGCCAGGTGAAGAGTAGCGT
GGACTACGCCCACAATAACGCTTTGACGACCTTCCTGTGCGGGGCTTTGA
ACTACCAGGTGACGCACCACCTGTTCCCCACTGTAAGTCAGTACCACTAC
CCCAAGATCGCGCCCATCATCCAGGAGGTATGCAAGGAGTTTAACGTCGA
CTACAAGGTCCTGCCCGATTTTGTGACGGCGTTCCATGCGCACATTGCGC
ATTTGAAGGCCTTGGGAGAGAGGGGCGAGGCGGCGGAGGTGCACATGGGT
TAG back to top
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