jgi.p|Nanoce1779_2|593988, mRNA_6164 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593988
Unique NamemRNA_6164
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length973
Alignment locationscaffold_14:677137..678618 -

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Properties
Property NameValue
TranscriptId594074
TrackFilteredModels2
ProteinId593988
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:677137..678618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593988gene_6164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593988mRNA_6164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6164CDS_6164Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6164 ID=mRNA_6164|Name=jgi.p|Nanoce1779_2|593988|organism=Nannochloropsis oceanica|type=mRNA|length=973bp
AACAGGCACGCCCCCATTTAACCATGGCGACCCTCCGTTTGCTTACACTC
TGCGCCATTGTTTCCACTGCCTTGGCCTTCGTGGCCATGGGTCCTCCCTC
CCGCCACACCGCGGCTGCCACCACCCGCCCTACGTTCACAGCATGGGGCT
CCCGGGGGCACACTAGCTCAGTCAAGTCTTTGGGTGCAGGCCGCGGCCTG
TGCATGGCGATGGAGCGCACCTACATCATGGCCAAGCCCGACGCCGTTCA
ACGTGGCATCATCTCTGACATTGTTGGGCGGTTTGAGAAAAAGGGGTACA
AGCTCGTGGCGCTGAAATTGGTGAAGCCCCCCCGCTCCCTGTTGGAGGAG
CACTACGAGTCATTGAAGGACAAGCCCTTCTTTCCCAAGTTAATGGAGTA
CATGACGAGCGGGCCCGTGGTGGCGATGGTGTGGGAGGGTAAGAACGTGG
TGGCTACCGGGCGAACGATGCTTGGGGCGACCAACCCCCTGGAAAGCGCG
CCGGGCACGATCCGCGGAGACTTCTCCATCGAGGTAGGGAGGGAGGATGG
GTGTATGGATGAAAGAAGGTGGAGGACACAAGCCGGCATGTCATGCGATT
GGGTCAAGCTGCTCCCGTCGGACAGGACGGCTTTTGAAAAGCGACGTCTC
TTACTGACACGTACACACACAAGCAACAAGCACACACGCCTATGACATAC
CATCCCCCTTGCCCCCCTTCCTTCCTCCCTCCCCTCCTGCAGGTGGGCCG
CAACATCTGCCACGGCTCGGACACGGTCGAGAATGCGGAGCGTGAGATTA
AGCTGTGGTTTGGTGAGGGGACTATCGACTGGGCCAGCCACAGCCAGGAT
TGGATTTACGAGTAACGGGAAAAGAGGAGAGGGAGTGAGGGAGGGAGTGA
GGGAGGGAGGGAGGAAGGGAGGGGAGGAAGACAGGTTGTGGTGCCCACAC
GCGTCACATACTATGCGATGTGT
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protein sequence of jgi.p|Nanoce1779_2|593988

>mRNA_6164-protein ID=mRNA_6164-protein|Name=jgi.p|Nanoce1779_2|593988|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MATLRLLTLCAIVSTALAFVAMGPPSRHTAAATTRPTFTAWGSRGHTSSV
KSLGAGRGLCMAMERTYIMAKPDAVQRGIISDIVGRFEKKGYKLVALKLV
KPPRSLLEEHYESLKDKPFFPKLMEYMTSGPVVAMVWEGKNVVATGRTML
GATNPLESAPGTIRGDFSIEVGREDGCMDERRWRTQAGMSCDWVKLLPSD
RTAFEKRRLLLTRTHTSNKHTRL*
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mRNA from alignment at scaffold_14:677137..678618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6164 ID=mRNA_6164|Name=jgi.p|Nanoce1779_2|593988|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_14:677137..678618- (Nannochloropsis oceanica)
AACAGGCACGCCCCCATTTAACCATGGCGACCCTCCGTTTGCTTACACTC
TGCGCCATTGTTTCCACTGCCTTGGCCTTCGTGGCCATGGGTCCTCCCTC
CCGCCACACCGCGGCTGCCACCACCCGCCCTACGTTCACAGCATGGGGCT
CCCGGGGGCACACTAGCTCAGTCAAGTCTTTGGGTGCAGGTACGGAGCAC
TTGCGGAAGATGATTGAGCTCGAGTGTATGCATATGTTTGTTAGTTTCAG
TATACCACCTACGTACTTCCTTGTCATCGGCATGGGCTATGCTGCTGGCG
GGCTTGGACTTATGCTGGAAGCTGCTGAGGTTGACGCGTGCGTCATCACA
CCATCCCCTCCTCCGTTCCTCCCTGAATATACTCTTGTCGACTCTAATTC
TTGTAAGAAGCAAGATGAAGATCAGGGAATAGAAAATAAGCACTGCCATT
CTGCATTGCCCAAATCTTATTTCTTCTCTCCCACTTTCCATCTCTTCTTC
CCTCCCCCCCCAGGCCGCGGCCTGTGCATGGCGATGGAGCGCACCTACAT
CATGGCCAAGCCCGACGCCGTTCAACGTGGCATCATCTCTGACATTGTTG
GGCGGTTTGAGAAAAAGGGGTACAAGCTCGTGGCGCTGAAATTGGTGAAG
CCCCCCCGCTCCCTGTTGGAGGAGCACTACGAGTCATTGAAGGTGAGAAG
GAAAAGAAAGAGGGAGAGAAGGAGAGAAAGAGGAAATCAAGCTTAAAGTT
AAATTATCAGCGGCCAAGTACTTACGATTGTAACGGTACATGAAATTCCT
GGTGAAAAGAGAGCAAAGATTCTCACAACGCACGCTTCCACCCCCTCCCT
CCCTCCCTCCCTTTCTCCCTCGCCCAGGACAAGCCCTTCTTTCCCAAGTT
AATGGAGTACATGACGAGCGGGCCCGTGGTGGCGATGGTGTGGGAGGGTA
AGAACGTGGTGGCTACCGGGCGAACGATGCTTGGGGCGACCAACCCCCTG
GAAAGCGCGCCGGGCACGATCCGCGGAGACTTCTCCATCGAGGTAGGGAG
GGAGGATGGGTGTATGGATGAAAGAAGGTGGAGGACACAAGCCGGCATGT
CATGCGATTGGGTCAAGCTGCTCCCGTCGGACAGGACGGCTTTTGAAAAG
CGACGTCTCTTACTGACACGTACACACACAAGCAACAAGCACACACGCCT
ATGACATACCATCCCCCTTGCCCCCCTTCCTTCCTCCCTCCCCTCCTGCA
GGTGGGCCGCAACATCTGCCACGGCTCGGACACGGTCGAGAATGCGGAGC
GTGAGATTAAGCTGTGGTTTGGTGAGGGGACTATCGACTGGGCCAGCCAC
AGCCAGGATTGGATTTACGAGTAACGGGAAAAGAGGAGAGGGAGTGAGGG
AGGGAGTGAGGGAGGGAGGGAGGAAGGGAGGGGAGGAAGACAGGTTGTGG
TGCCCACACGCGTCACATACTATGCGATGTGT
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Coding sequence (CDS) from alignment at scaffold_14:677137..678618-

>mRNA_6164 ID=mRNA_6164|Name=jgi.p|Nanoce1779_2|593988|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_14:677137..678618- (Nannochloropsis oceanica)
GACAAGCCCTTCTTTCCCAAGTTAATGGAGTACATGACGAGCGGGCCCGT
GGTGGCGATGGTGTGGGAGGGTAAGAACGTGGTGGCTACCGGGCGAACGA
TGCTTGGGGCGACCAACCCCCTGGAAAGCGCGCCGGGCACGATCCGCGGA
GACTTCTCCATCGAGGTAGGGAGGGAGGATGGGTGTATGGATGAAAGAAG
GTGGAGGACACAAGCCGGCATGTCATGCGATTGGGTCAAGCTGCTCCCGT
CGGACAGGACGGCTTTTGAAAAGCGACGTCTCTTACTGACACGTACACAC
ACAAGCAACAAGCACACACGCCTATGAGCCGCGGCCTGTGCATGGCGATG
GAGCGCACCTACATCATGGCCAAGCCCGACGCCGTTCAACGTGGCATCAT
CTCTGACATTGTTGGGCGGTTTGAGAAAAAGGGGTACAAGCTCGTGGCGC
TGAAATTGGTGAAGCCCCCCCGCTCCCTGTTGGAGGAGCACTACGAGTCA
TTGAAGATGGCGACCCTCCGTTTGCTTACACTCTGCGCCATTGTTTCCAC
TGCCTTGGCCTTCGTGGCCATGGGTCCTCCCTCCCGCCACACCGCGGCTG
CCACCACCCGCCCTACGTTCACAGCATGGGGCTCCCGGGGGCACACTAGC
TCAGTCAAGTCTTTGGGTGCAGGACAAGCCCTTCTTTCCCAAGTTAATGG
AGTACATGACGAGCGGGCCCGTGGTGGCGATGGTGTGGGAGGGTAAGAAC
GTGGTGGCTACCGGGCGAACGATGCTTGGGGCGACCAACCCCCTGGAAAG
CGCGCCGGGCACGATCCGCGGAGACTTCTCCATCGAGGTAGGGAGGGAGG
ATGGGTGTATGGATGAAAGAAGGTGGAGGACACAAGCCGGCATGTCATGC
GATTGGGTCAAGCTGCTCCCGTCGGACAGGACGGCTTTTGAAAAGCGACG
TCTCTTACTGACACGTACACACACAAGCAACAAGCACACACGCCTATGAG
CCGCGGCCTGTGCATGGCGATGGAGCGCACCTACATCATGGCCAAGCCCG
ACGCCGTTCAACGTGGCATCATCTCTGACATTGTTGGGCGGTTTGAGAAA
AAGGGGTACAAGCTCGTGGCGCTGAAATTGGTGAAGCCCCCCCGCTCCCT
GTTGGAGGAGCACTACGAGTCATTGAAGATGGCGACCCTCCGTTTGCTTA
CACTCTGCGCCATTGTTTCCACTGCCTTGGCCTTCGTGGCCATGGGTCCT
CCCTCCCGCCACACCGCGGCTGCCACCACCCGCCCTACGTTCACAGCATG
GGGCTCCCGGGGGCACACTAGCTCAGTCAAGTCTTTGGGTGCAGGACAAG
CCCTTCTTTCCCAAGTTAATGGAGTACATGACGAGCGGGCCCGTGGTGGC
GATGGTGTGGGAGGGTAAGAACGTGGTGGCTACCGGGCGAACGATGCTTG
GGGCGACCAACCCCCTGGAAAGCGCGCCGGGCACGATCCGCGGAGACTTC
TCCATCGAGGTAGGGAGGGAGGATGGGTGTATGGATGAAAGAAGGTGGAG
GACACAAGCCGGCATGTCATGCGATTGGGTCAAGCTGCTCCCGTCGGACA
GGACGGCTTTTGAAAAGCGACGTCTCTTACTGACACGTACACACACAAGC
AACAAGCACACACGCCTATGAGCCGCGGCCTGTGCATGGCGATGGAGCGC
ACCTACATCATGGCCAAGCCCGACGCCGTTCAACGTGGCATCATCTCTGA
CATTGTTGGGCGGTTTGAGAAAAAGGGGTACAAGCTCGTGGCGCTGAAAT
TGGTGAAGCCCCCCCGCTCCCTGTTGGAGGAGCACTACGAGTCATTGAAG
ATGGCGACCCTCCGTTTGCTTACACTCTGCGCCATTGTTTCCACTGCCTT
GGCCTTCGTGGCCATGGGTCCTCCCTCCCGCCACACCGCGGCTGCCACCA
CCCGCCCTACGTTCACAGCATGGGGCTCCCGGGGGCACACTAGCTCAGTC
AAGTCTTTGGGTGCAG
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Synonyms
Publications