|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 83335 |
| Track | FilteredModels2 |
| ProteinId | 83249 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:667033..669117 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6161 ID=mRNA_6161|Name=jgi.p|Nanoce1779_2|83249|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
GTTTTAGGGAGCAGCCGTGCTCGCGGCGGAGCAAAACTAAGTCGCTGCAT
GATTGTGCTGGTGCTGCACTCTCTGTGTTTGATTTATATCAAGGTGCAGA
AGTCTATTTGAATCGGAAGGAGGCCGTAGATGACCAGGAAATAAGCGAAA
GTTGATGCGGGTGTCTCCTCCAGACCAAGCTCTGTTTTACCATCACCATC
ATTACTTATCCTCTTCCGTCTCCTTCCCCTCCTCCTCTATCCGCAGCGTT
TGGCCGTGGGACCCCAGAGCCAGGGACAGGGACCAAGAAAGGGCGAAGCA
AGCAAAGGGCAGCCAGGCCATAATATCATCAACTTGTTGAACATTGTACG
CACCACTGCTACTGCTAGATACGCCGCCTTGGTCTCACTTCCAGCTGGCC
TCGCACGTTGCGCATGCGCCTTTGAAATAAGTGCGGCATGTCATCTTGTC
CGCAATGCTACCTGGGTCAATGCCGTAAGCACAAGCTCCAAGACCACGGC
GCCCGAGAACGCGCCCTCCTTTCCTCCCGCTCCGCATTGCAGCAACAGTT
GTATGAATCCCTCGTACAGCCCCACGTGGACACCTTGAAGACAAATATAA
AAGAGACCGCAGCAGCGGAGGAGGGCCAGGGGAGGTATAGAGAGGAGGTA
GGGAAGGACAGGGAGAGGGCACAAAGACAGAAGAGCAAGTTCAGCAAGCA
GCAAATATTGAAGGCCCAGTCTCTCGGCGGATTACGGGGGGACCTCCTGA
AGACCATGCTCGATAACGACAGCGACTTGGAGAGAGGAGAAGATGATGAA
GACGACGATGGGGAGGATGGGGGAAGGGAACGGAAAAAATCAAAGAAGCG
TAAGAAGGAAAGCTCTAGAAAGGAGTCGAAGAAAGAAAAGAAGCGGAGAA
AGAAGGACGATGACGGCAAAAAAAAACGAAAACAGAAAGAGAAAAAGGGG
AAGCGCAGCAGTAGTGGCAGCAGCAGTAAGCGAAATAAGGAGAAGGAGAC
GGGGAAGGAGAAGGACCGGAGGGCACGCAAACGGAAGCGTGAGGATGATG
AAAAGGAGGAGGAACAGGCGCGGGAAAATCCAGAAGCAGCTGCCGTCCGT
CCCTCCTCTTCTCCTGGTCCATGTGGTGGCAGTGAGAGTCTGAGCGACGG
AAATGGCATCTCGTCTACCATATTGCCAAGCTCACCATCTTCTCCCACCT
CCGCTGCTTCCTCGTCCTCGTCCTCGTCCTCGTCATCGGAAGCAGGGGGG
AGTGAGAGCGAAGGGGAAGGCAGGGGTGAGGGAGAAGGGTGGTCGGTACA
GAAGAAAGGAGGAAACAACGGTGATGGTGGAGGGAATGTGAAAGGAGGAG
AGGAGGCAAATAAATGAGAGGAAGGCAGGGGGATGGAAATGACTGAAAGT
AATTGGTGAAAAAGTACGGTCCGACCTTCAGAGAGGAATTTAAAGTTACT
TCAAAGCTGTAATTTTTGCCTGAAGCAGCTAACGCACGTGCAGGAGCATG
TTGCTGAATTTTATCGGAACTCCTAATTCTTTTTCTGTTGTC back to topprotein sequence of jgi.p|Nanoce1779_2|83249 >mRNA_6161-protein ID=mRNA_6161-protein|Name=jgi.p|Nanoce1779_2|83249|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MSSCPQCYLGQCRKHKLQDHGARERALLSSRSALQQQLYESLVQPHVDTL
KTNIKETAAAEEGQGRYREEVGKDRERAQRQKSKFSKQQILKAQSLGGLR
GDLLKTMLDNDSDLERGEDDEDDDGEDGGRERKKSKKRKKESSRKESKKE
KKRRKKDDDGKKKRKQKEKKGKRSSSGSSSKRNKEKETGKEKDRRARKRK
REDDEKEEEQARENPEAAAVRPSSSPGPCGGSESLSDGNGISSTILPSSP
SSPTSAASSSSSSSSSSEAGGSESEGEGRGEGEGWSVQKKGGNNGDGGGN
VKGGEEANK* back to topmRNA from alignment at scaffold_14:667033..669117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6161 ID=mRNA_6161|Name=jgi.p|Nanoce1779_2|83249|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at scaffold_14:667033..669117- (Nannochloropsis oceanica)
GTTTTAGGGAGCAGCCGTGCTCGCGGCGGAGCAAAACTAAGTCGCTGCAT
GATTGTGCTGGTGCTGCACTCTCTGTGTTTGATTTATATCAAGGTGCAGA
AGTCTATTTGAATCGGAAGGAGGCCGTAGATGACCAGGAAATAAGCGAAA
GTTGATGCGGGTGTCTCCTCCAGACCAAGCTCTGTTTTACCATCACCATC
ATTACTTATCCTCTTCCGTCTCCTTCCCCTCCTCCTCTATCCGCAGCGTT
TGGCCGTGGGACCCCAGAGCCAGGGACAGGGACCAAGAAAGGGCGAAGCA
AGCAAAGGGCAGCCAGGCCATAATATCATCAACTTGTTGAACATTGTACG
CACCACTGCTACTGCTAGATACGCCGCCTTGGTCTCACTTCCAGCTGGCC
TCGCACGTTGCGCATGCGCCTTTGAAATAAGTGCGGCATGTCATCTTGTC
CGCAATGCTACCTGGGTCAATGCCGTAAGCACAAGGTCCGTCCCCTCTCT
CTATCCCGATTCTCCCTCCCCCACTCCCTCCCACGCACCCCCAGCTTCTT
TCACATCCTCCTTCTCTCCTGACCACCCTCCCGAGCATGCTCATTGTCGG
TATCACGCTTACAGCAAGATGTATATGTTGCTAGTACCGTACTCCTTCAT
CTCTTCGTTCTACGCATCCCCACTCCTTCTAACCCTCCCTTCCCCCCTCA
TCATCTCCGCCCAAGCTCCAAGACCACGGCGCCCGAGAACGCGCCCTCCT
TTCCTCCCGCTCCGCATTGCAGCAACAGTTGTATGAATCCCTCGTACAGC
CCCACGTGGACACCTTGAAGACAAATATAAAAGAGACCGCAGCAGCGGAG
GAGGGCCAGGGGAGGTATAGAGAGGAGGTAGGGAAGGACAGGGAGAGGGC
ACAAAGACAGAAGAGCAAGTTCAGCAAGCAGCAAATATTGAAGGTAGGCA
GGGAGAAAGAAAGAGGGTGGAGGGGGAAGGGAGAAGTGGCTCTGATTTCA
TTTCTGCAGATTCTTAACACACACCAACACACCCATACCCACACACACAC
ACACACACACACACACACTTCCCTCACTCTCTCTCCCCAACATGCATGCC
CAGGCCCAGTCTCTCGGCGGATTACGGGGGGACCTCCTGAAGACCATGCT
CGATAACGACAGCGACTTGGAGAGAGGAGAAGATGATGAAGACGACGATG
GGGAGGATGGGGGAAGGGAACGGTAGTTGGTGCAGGGGGGGGAGGGGGGA
GGGAGGGAGGGAGGGAGGGCGTGCTGGCATTCTAGACGAATTATGACTTG
GCAGCGTACATACTCACGATTCAACATCTAATCCTTGCCCTCCCTTCCTC
CCCCCTCTTCTCTTCTCTCTCGCAGGAAAAAATCAAAGAAGCGTAAGAAG
GAAAGCTCTAGAAAGGAGTCGAAGAAAGAAAAGAAGCGGAGAAAGAAGGA
CGATGACGGCAAAAAAAAACGAAAACAGAAAGAGAAAAAGGGGAAGCGCA
GCAGTAGTGGCAGCAGCAGTAAGCGAAATAAGGAGAAGGAGACGGGGAAG
GAGAAGGACCGGAGGGCACGCAAACGGAAGCGTGAGGATGATGAAAAGGA
GGAGGAACAGGCGCGGGAAAATCCAGAAGCAGCTGCCGTCCGTCCCTCCT
CTTCTCCTGGTCCATGTGGTGGCAGTGAGAGTCTGAGCGACGGAAATGGC
ATCTCGTCTACCATATTGCCAAGCTCACCATCTTCTCCCACCTCCGCTGC
TTCCTCGTCCTCGTCCTCGTCCTCGTCATCGGAAGCAGGGGGGAGTGAGA
GCGAAGGGGAAGGCAGGGGTGAGGGAGAAGGGTGGTCGGTACAGAAGAAA
GGAGGAAACAACGGTGATGGTGGAGGGAATGTGAAAGGAGGAGAGGAGGC
AAATAAATGAGAGGAAGGCAGGGGGATGGAAATGACTGAAAGTAATTGGT
GAAAAAGTACGGTCCGACCTTCAGAGAGGAATTTAAAGTTACTTCAAAGC
TGTAATTTTTGCCTGAAGCAGCTAACGCACGTGCAGGAGCATGTTGCTGA
ATTTTATCGGAACTCCTAATTCTTTTTCTGTTGTC back to topCoding sequence (CDS) from alignment at scaffold_14:667033..669117- >mRNA_6161 ID=mRNA_6161|Name=jgi.p|Nanoce1779_2|83249|organism=Nannochloropsis oceanica|type=CDS|length=3720bp|location=Sequence derived from alignment at scaffold_14:667033..669117- (Nannochloropsis oceanica)
GAAAAAATCAAAGAAGCGTAAGAAGGAAAGCTCTAGAAAGGAGTCGAAGA
AAGAAAAGAAGCGGAGAAAGAAGGACGATGACGGCAAAAAAAAACGAAAA
CAGAAAGAGAAAAAGGGGAAGCGCAGCAGTAGTGGCAGCAGCAGTAAGCG
AAATAAGGAGAAGGAGACGGGGAAGGAGAAGGACCGGAGGGCACGCAAAC
GGAAGCGTGAGGATGATGAAAAGGAGGAGGAACAGGCGCGGGAAAATCCA
GAAGCAGCTGCCGTCCGTCCCTCCTCTTCTCCTGGTCCATGTGGTGGCAG
TGAGAGTCTGAGCGACGGAAATGGCATCTCGTCTACCATATTGCCAAGCT
CACCATCTTCTCCCACCTCCGCTGCTTCCTCGTCCTCGTCCTCGTCCTCG
TCATCGGAAGCAGGGGGGAGTGAGAGCGAAGGGGAAGGCAGGGGTGAGGG
AGAAGGGTGGTCGGTACAGAAGAAAGGAGGAAACAACGGTGATGGTGGAG
GGAATGTGAAAGGAGGAGAGGAGGCAAATAAATGAGCCCAGTCTCTCGGC
GGATTACGGGGGGACCTCCTGAAGACCATGCTCGATAACGACAGCGACTT
GGAGAGAGGAGAAGATGATGAAGACGACGATGGGGAGGATGGGGGAAGGG
AACGCTCCAAGACCACGGCGCCCGAGAACGCGCCCTCCTTTCCTCCCGCT
CCGCATTGCAGCAACAGTTGTATGAATCCCTCGTACAGCCCCACGTGGAC
ACCTTGAAGACAAATATAAAAGAGACCGCAGCAGCGGAGGAGGGCCAGGG
GAGGTATAGAGAGGAGGTAGGGAAGGACAGGGAGAGGGCACAAAGACAGA
AGAGCAAGTTCAGCAAGCAGCAAATATTGAAGATGTCATCTTGTCCGCAA
TGCTACCTGGGTCAATGCCGTAAGCACAAGGAAAAAATCAAAGAAGCGTA
AGAAGGAAAGCTCTAGAAAGGAGTCGAAGAAAGAAAAGAAGCGGAGAAAG
AAGGACGATGACGGCAAAAAAAAACGAAAACAGAAAGAGAAAAAGGGGAA
GCGCAGCAGTAGTGGCAGCAGCAGTAAGCGAAATAAGGAGAAGGAGACGG
GGAAGGAGAAGGACCGGAGGGCACGCAAACGGAAGCGTGAGGATGATGAA
AAGGAGGAGGAACAGGCGCGGGAAAATCCAGAAGCAGCTGCCGTCCGTCC
CTCCTCTTCTCCTGGTCCATGTGGTGGCAGTGAGAGTCTGAGCGACGGAA
ATGGCATCTCGTCTACCATATTGCCAAGCTCACCATCTTCTCCCACCTCC
GCTGCTTCCTCGTCCTCGTCCTCGTCCTCGTCATCGGAAGCAGGGGGGAG
TGAGAGCGAAGGGGAAGGCAGGGGTGAGGGAGAAGGGTGGTCGGTACAGA
AGAAAGGAGGAAACAACGGTGATGGTGGAGGGAATGTGAAAGGAGGAGAG
GAGGCAAATAAATGAGCCCAGTCTCTCGGCGGATTACGGGGGGACCTCCT
GAAGACCATGCTCGATAACGACAGCGACTTGGAGAGAGGAGAAGATGATG
AAGACGACGATGGGGAGGATGGGGGAAGGGAACGCTCCAAGACCACGGCG
CCCGAGAACGCGCCCTCCTTTCCTCCCGCTCCGCATTGCAGCAACAGTTG
TATGAATCCCTCGTACAGCCCCACGTGGACACCTTGAAGACAAATATAAA
AGAGACCGCAGCAGCGGAGGAGGGCCAGGGGAGGTATAGAGAGGAGGTAG
GGAAGGACAGGGAGAGGGCACAAAGACAGAAGAGCAAGTTCAGCAAGCAG
CAAATATTGAAGATGTCATCTTGTCCGCAATGCTACCTGGGTCAATGCCG
TAAGCACAAGGAAAAAATCAAAGAAGCGTAAGAAGGAAAGCTCTAGAAAG
GAGTCGAAGAAAGAAAAGAAGCGGAGAAAGAAGGACGATGACGGCAAAAA
AAAACGAAAACAGAAAGAGAAAAAGGGGAAGCGCAGCAGTAGTGGCAGCA
GCAGTAAGCGAAATAAGGAGAAGGAGACGGGGAAGGAGAAGGACCGGAGG
GCACGCAAACGGAAGCGTGAGGATGATGAAAAGGAGGAGGAACAGGCGCG
GGAAAATCCAGAAGCAGCTGCCGTCCGTCCCTCCTCTTCTCCTGGTCCAT
GTGGTGGCAGTGAGAGTCTGAGCGACGGAAATGGCATCTCGTCTACCATA
TTGCCAAGCTCACCATCTTCTCCCACCTCCGCTGCTTCCTCGTCCTCGTC
CTCGTCCTCGTCATCGGAAGCAGGGGGGAGTGAGAGCGAAGGGGAAGGCA
GGGGTGAGGGAGAAGGGTGGTCGGTACAGAAGAAAGGAGGAAACAACGGT
GATGGTGGAGGGAATGTGAAAGGAGGAGAGGAGGCAAATAAATGAGCCCA
GTCTCTCGGCGGATTACGGGGGGACCTCCTGAAGACCATGCTCGATAACG
ACAGCGACTTGGAGAGAGGAGAAGATGATGAAGACGACGATGGGGAGGAT
GGGGGAAGGGAACGCTCCAAGACCACGGCGCCCGAGAACGCGCCCTCCTT
TCCTCCCGCTCCGCATTGCAGCAACAGTTGTATGAATCCCTCGTACAGCC
CCACGTGGACACCTTGAAGACAAATATAAAAGAGACCGCAGCAGCGGAGG
AGGGCCAGGGGAGGTATAGAGAGGAGGTAGGGAAGGACAGGGAGAGGGCA
CAAAGACAGAAGAGCAAGTTCAGCAAGCAGCAAATATTGAAGATGTCATC
TTGTCCGCAATGCTACCTGGGTCAATGCCGTAAGCACAAGGAAAAAATCA
AAGAAGCGTAAGAAGGAAAGCTCTAGAAAGGAGTCGAAGAAAGAAAAGAA
GCGGAGAAAGAAGGACGATGACGGCAAAAAAAAACGAAAACAGAAAGAGA
AAAAGGGGAAGCGCAGCAGTAGTGGCAGCAGCAGTAAGCGAAATAAGGAG
AAGGAGACGGGGAAGGAGAAGGACCGGAGGGCACGCAAACGGAAGCGTGA
GGATGATGAAAAGGAGGAGGAACAGGCGCGGGAAAATCCAGAAGCAGCTG
CCGTCCGTCCCTCCTCTTCTCCTGGTCCATGTGGTGGCAGTGAGAGTCTG
AGCGACGGAAATGGCATCTCGTCTACCATATTGCCAAGCTCACCATCTTC
TCCCACCTCCGCTGCTTCCTCGTCCTCGTCCTCGTCCTCGTCATCGGAAG
CAGGGGGGAGTGAGAGCGAAGGGGAAGGCAGGGGTGAGGGAGAAGGGTGG
TCGGTACAGAAGAAAGGAGGAAACAACGGTGATGGTGGAGGGAATGTGAA
AGGAGGAGAGGAGGCAAATAAATGAGCCCAGTCTCTCGGCGGATTACGGG
GGGACCTCCTGAAGACCATGCTCGATAACGACAGCGACTTGGAGAGAGGA
GAAGATGATGAAGACGACGATGGGGAGGATGGGGGAAGGGAACGCTCCAA
GACCACGGCGCCCGAGAACGCGCCCTCCTTTCCTCCCGCTCCGCATTGCA
GCAACAGTTGTATGAATCCCTCGTACAGCCCCACGTGGACACCTTGAAGA
CAAATATAAAAGAGACCGCAGCAGCGGAGGAGGGCCAGGGGAGGTATAGA
GAGGAGGTAGGGAAGGACAGGGAGAGGGCACAAAGACAGAAGAGCAAGTT
CAGCAAGCAGCAAATATTGAAGATGTCATCTTGTCCGCAATGCTACCTGG
GTCAATGCCGTAAGCACAAG back to top
|