|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 649467 |
| Track | FilteredModels2 |
| ProteinId | 649381 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:663467..666124 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6160 ID=mRNA_6160|Name=jgi.p|Nanoce1779_2|649381|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
GTCGAACTGGCCACCGCAACAATTGCTTCTCTGGACGAACAAAGCGTGCC
ATTGGACCTACTGGCCCTCACCCATTACATGCAGGCCTTCGCCACCCGCC
GCGATGTCGACGGGGCTGAAGCCGTCTTTGCGCGCATGAAGGCCCAAGGC
CTCTCACCTGACATCGTCCCTTATTCTATCCTATTAAATCTCCACGCCAA
CCGAGGAGACGTGGCGAAGGCCGAGGAGACTTTTAAAGAGATGAAAGAGG
TCGGCAATTTACCGAGGAGCACCCGTGCGTATACGGCCCTGATGAAGGCC
TATATGAAAAGAAAGGACACAGAGGGGGCAGAGGACGTATTGTTTCGGAT
GGCAGCAGCAGGAGAGACGCCCGATGTTCACGCGTACACCATCTTGATGA
GGGCGTACGGAAAGAGAGGGGACATCCAAGGCGCAGAAGACGTTATGAGA
AGGGTGTTGCTGGCGGTGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGG
GGGAATGCGGGCACTCCTTCCCTCCCTCCTCACCGATGAAGAGCCCTATC
TCGTCGTCCTCCGGGCCTGCGTGGAAGCCGGCGACGACGTCACGGCCCGC
AGCGTCCTGCAACTGATGCCCTCGCCATCCCCTGGGCCCTCCCTCTCGGC
CTTCAACCTTCTCCTCCACCTCCACGCTAAGAAGGGAGAGACCCTAAGTG
CCGAGCGTGTGCTGGCGCAGATTGCTCAGAACGGCCTCTCCCCCTCCCTC
TCGTCCTATAACACCCTCCTCCATGCCTATGTCCGACGGGCATCCCGCGC
CCGGAGAGTCAGCCAAGGAGAGCAGAAGCGGGTCGAGGCCGTGTACAAGG
CTTTACGGAGGTCGTCTCCCCCTTCCCTCCCTTCCTCCCTCGCGTCCTCG
TCATTGAGGCCGGACTCCTACACCCTGACGGCGATGTTGCGGTGGTTGCA
GCAAGTCAGCCGGGCCGCGCACAGAACCGCCCATCGCGAGATGTACCAGA
TCGTCTTGAAAGACATCGAGACGTGGCTACCACCCGAGCGAAGGTCCAGT
CAGCTCTACACGGCCTTGTTGGGCGCAGCGGCGGCGGAGGAGGATTGGGA
GAGAGTGGAGGAGGCGTACGAAGAAGCGCGTCGACAGCTGAAGCAGGGAA
AGATGCCTAGTCGCGCCTATGCATTCGTGGAGACTTGTTACAGGAAAATC
AAGTCGACGAAGGAATTGAAGGAGGGAAGGAGGGAGGGAGGGAAGGAGGG
AAAGAGGGAGGGTGGGGTGGTCCCGAGTCGGCCGGCGGTGGCGGGAGCCC
GACGTGTGTAAATAGCAATAAATTAGGGAAGATAGTCTCACTGGAATCAG
GCAAGAGGAAAGCGTAGATTGATGAGTGAGATAGTAGGAGGAGATAATAG
ATTGTAGAAAGAGCAACCGATTGAGCCTCCGACTTAAAATTGCCATAAAA
AATAATTTGAATCAAAGAACAACGGAAAGAGCTTATCGTAACAGTGCAGA
AATATCCCCAAAACGCGAAAACTTCGCGCGTCAACACGTGTACTGAAGCA
AAAAGAGAGACAGGAATCTCAGACAGCGCTTCCATGCCGGCCACGTGTGT
GGCGCGGCCTGGGCGTGTCGAGTCGTGGTGGTATGCTGGTCTTGTCTTTT
TATTCTTTCGAGTCAATTATTTCCCCTGACTAGAGACATCCATAATGCGA
ATGAGGAGGGAGGCCTCTGTCTCTGGTCGCACACTCC back to topprotein sequence of jgi.p|Nanoce1779_2|649381 >mRNA_6160-protein ID=mRNA_6160-protein|Name=jgi.p|Nanoce1779_2|649381|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MQAFATRRDVDGAEAVFARMKAQGLSPDIVPYSILLNLHANRGDVAKAEE
TFKEMKEVGNLPRSTRAYTALMKAYMKRKDTEGAEDVLFRMAAAGETPDV
HAYTILMRAYGKRGDIQGAEDVMRRVLLAVEGGKEGGREGGGMRALLPSL
LTDEEPYLVVLRACVEAGDDVTARSVLQLMPSPSPGPSLSAFNLLLHLHA
KKGETLSAERVLAQIAQNGLSPSLSSYNTLLHAYVRRASRARRVSQGEQK
RVEAVYKALRRSSPPSLPSSLASSSLRPDSYTLTAMLRWLQQVSRAAHRT
AHREMYQIVLKDIETWLPPERRSSQLYTALLGAAAAEEDWERVEEAYEEA
RRQLKQGKMPSRAYAFVETCYRKIKSTKELKEGRREGGKEGKREGGVVPS
RPAVAGARRV* back to topmRNA from alignment at scaffold_14:663467..666124- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6160 ID=mRNA_6160|Name=jgi.p|Nanoce1779_2|649381|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at scaffold_14:663467..666124- (Nannochloropsis oceanica)
GTCGAACTGGCCACCGCAACAATTGCTTCTCTGGACGAACAAAGCGTGCC
ATTGGACCTACTGGCCCTCACCCATTACATGCAGGCCTTCGCCACCCGCC
GCGATGTCGACGGGGCTGAAGCCGTCTTTGCGCGCATGAAGGCCCAAGGC
CTCTCACCTGACATCGTCCCTTATTCTATCCTATTAAATCTCCACGCCAA
CCGAGGAGACGTGGCGAAGGCCGAGGAGACTTTTAAAGAGATGAAAGAGG
TCGGCAATTTACCGAGGAGCACCCGTGCGTATACGGCCCTGATGAAGGCC
TATATGAAAAGAAAGGACACAGAGGGGGCAGAGGACGTATTGTTTCGGAT
GGCAGCAGCAGGAGAGACGCCCGATGTTCACGCGTACACCATCTTGATGA
GGGCGTACGGAAAGAGAGGGGACATCCAAGGCGCAGAAGACGTTATGAGA
AGGGTGTTGCTGGCGGTGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGG
GGGAATGGTCTTGGATGTGGTGATTTTCAATGCACTTTTGAGAGTGTATG
TGACAGGGAAGATGCCAATCGTGGTGGGGGGGGGAAGGAGGGAAGGAGGG
AGGGAGAGGGGGAGGGGGTTGGAAGAGGGTGTGCAGAGTGTGTTGGCGCG
TATGAAAGAGCAGGGACTGGAGCCGGACGAAACTACCGAGGCCTTGCTGG
CGATGACAAGGGGGGAGAGGGCCAAGCGGATGAAGAGGCAGCAGCAGTTG
CTGAAGGGGATGACGATCATCAACAAGGGAAGTGGGATAGGCGGAGGAAG
AGGAGTACTGCCCTCCTCCTTGGCGTCGGAAGCAGCAGCAGCAGCAGCAG
CAGCAGAAGGAAGAGGAGGAGGAAGAAGTGGGAGGGGGCAAGTGGTAGCA
GGAGGAGGCGACGTGGCGTCTGAAGCAGCAGCGGCAGCAGCATCTCCCGA
AGAGATGGTGCGGCATTTTACCGCCAAGTTGCAGAAGGAGAAGGAGGCCC
GACAAGAGCAACAGCAACCACTACAACAACAACAACAGCAGCAACAACTA
CATCAAGAACAAGAACAAGAGCAACAGCCCTCTGTATCTTCGTCTGTTGT
ACTGCCTTCCTCCTTCCCACCATCACCGCCATCAGCAGCAGCACGCGTCA
CCGGAGAAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGGAGGAAGTGGA
GCCCTCTCGCCCGAAGCGCTCGCCCGCGTCCACGTCAAGTCCCTCGTGGC
CGCCCTCACGGCGCAACAGCGGGCACTCCTTCCCTCCCTCCTCACCGATG
AAGAGCCCTATCTCGTCGTCCTCCGGGCCTGCGTGGAAGCCGGCGACGAC
GTCACGGCCCGCAGCGTCCTGCAACTGATGCCCTCGCCATCCCCTGGGCC
CTCCCTCTCGGCCTTCAACCTTCTCCTCCACCTCCACGCTAAGAAGGGAG
AGACCCTAAGTGCCGAGCGTGTGCTGGCGCAGATTGCTCAGAACGGCCTC
TCCCCCTCCCTCTCGTCCTATAACACCCTCCTCCATGCCTATGTCCGACG
GGCATCCCGCGCCCGGAGAGTCAGCCAAGGAGAGCAGAAGCGGGTCGAGG
CCGTGTACAAGGCTTTACGGAGGTCGTCTCCCCCTTCCCTCCCTTCCTCC
CTCGCGTCCTCGTCATTGAGGCCGGACTCCTACACCCTGACGGCGATGTT
GCGGTGGTTGCAGCAAGTCAGCCGGGCCGCGCACAGTGGAGGGCAAGAAA
GGGAGGGTGGAGGTGCCTTCATGATGGAGGAGGAGGAGGATGAGGGATGG
ATGCTGGGAGGGATGGGGGCGAAGGAACAGGAGAATGGCGGGACGGGTGG
TGGTGCTGGTGAAGGAGGAGGGAGGGGAGGGGGAAGGGAGGGAGGAACCG
CCCATCGCGAGATGTACCAGATCGTCTTGAAAGACATCGAGACGTGGCTA
CCACCCGAGCGAAGGTCCAGTCAGCTCTACACGGCCTTGTTGGGCGCAGC
GGCGGCGGAGGAGGATTGGGAGAGAGTGGAGGAGGCGTACGAAGAAGCGC
GTCGACAGCTGAAGCAGGGAAAGATGCCTAGTCGCGCCTATGCATTCGTG
GAGACTTGTTACAGGAAAATCAAGTCGACGAAGGAATTGAAGGAGGGAAG
GAGGGAGGGAGGGAAGGAGGGAAAGAGGGAGGGTGGGGTGGTCCCGAGTC
GGCCGGCGGTGGCGGGAGCCCGACGTGTGTAAATAGCAATAAATTAGGGA
AGATAGTCTCACTGGAATCAGGCAAGAGGAAAGCGTAGATTGATGAGTGA
GATAGTAGGAGGAGATAATAGATTGTAGAAAGAGCAACCGATTGAGCCTC
CGACTTAAAATTGCCATAAAAAATAATTTGAATCAAAGAACAACGGAAAG
AGCTTATCGTAACAGTGCAGAAATATCCCCAAAACGCGAAAACTTCGCGC
GTCAACACGTGTACTGAAGCAAAAAGAGAGACAGGAATCTCAGACAGCGC
TTCCATGCCGGCCACGTGTGTGGCGCGGCCTGGGCGTGTCGAGTCGTGGT
GGTATGCTGGTCTTGTCTTTTTATTCTTTCGAGTCAATTATTTCCCCTGA
CTAGAGACATCCATAATGCGAATGAGGAGGGAGGCCTCTGTCTCTGGTCG
CACACTCC back to topCoding sequence (CDS) from alignment at scaffold_14:663467..666124- >mRNA_6160 ID=mRNA_6160|Name=jgi.p|Nanoce1779_2|649381|organism=Nannochloropsis oceanica|type=CDS|length=3699bp|location=Sequence derived from alignment at scaffold_14:663467..666124- (Nannochloropsis oceanica)
GAACCGCCCATCGCGAGATGTACCAGATCGTCTTGAAAGACATCGAGACG
TGGCTACCACCCGAGCGAAGGTCCAGTCAGCTCTACACGGCCTTGTTGGG
CGCAGCGGCGGCGGAGGAGGATTGGGAGAGAGTGGAGGAGGCGTACGAAG
AAGCGCGTCGACAGCTGAAGCAGGGAAAGATGCCTAGTCGCGCCTATGCA
TTCGTGGAGACTTGTTACAGGAAAATCAAGTCGACGAAGGAATTGAAGGA
GGGAAGGAGGGAGGGAGGGAAGGAGGGAAAGAGGGAGGGTGGGGTGGTCC
CGAGTCGGCCGGCGGTGGCGGGAGCCCGACGTGTGTAACGGGCACTCCTT
CCCTCCCTCCTCACCGATGAAGAGCCCTATCTCGTCGTCCTCCGGGCCTG
CGTGGAAGCCGGCGACGACGTCACGGCCCGCAGCGTCCTGCAACTGATGC
CCTCGCCATCCCCTGGGCCCTCCCTCTCGGCCTTCAACCTTCTCCTCCAC
CTCCACGCTAAGAAGGGAGAGACCCTAAGTGCCGAGCGTGTGCTGGCGCA
GATTGCTCAGAACGGCCTCTCCCCCTCCCTCTCGTCCTATAACACCCTCC
TCCATGCCTATGTCCGACGGGCATCCCGCGCCCGGAGAGTCAGCCAAGGA
GAGCAGAAGCGGGTCGAGGCCGTGTACAAGGCTTTACGGAGGTCGTCTCC
CCCTTCCCTCCCTTCCTCCCTCGCGTCCTCGTCATTGAGGCCGGACTCCT
ACACCCTGACGGCGATGTTGCGGTGGTTGCAGCAAGTCAGCCGGGCCGCG
CACAATGCAGGCCTTCGCCACCCGCCGCGATGTCGACGGGGCTGAAGCCG
TCTTTGCGCGCATGAAGGCCCAAGGCCTCTCACCTGACATCGTCCCTTAT
TCTATCCTATTAAATCTCCACGCCAACCGAGGAGACGTGGCGAAGGCCGA
GGAGACTTTTAAAGAGATGAAAGAGGTCGGCAATTTACCGAGGAGCACCC
GTGCGTATACGGCCCTGATGAAGGCCTATATGAAAAGAAAGGACACAGAG
GGGGCAGAGGACGTATTGTTTCGGATGGCAGCAGCAGGAGAGACGCCCGA
TGTTCACGCGTACACCATCTTGATGAGGGCGTACGGAAAGAGAGGGGACA
TCCAAGGCGCAGAAGACGTTATGAGAAGGGTGTTGCTGGCGGTGGAGGGA
GGGAAGGAGGGAGGGAGGGAGGGAGGGGGAATGGAACCGCCCATCGCGAG
ATGTACCAGATCGTCTTGAAAGACATCGAGACGTGGCTACCACCCGAGCG
AAGGTCCAGTCAGCTCTACACGGCCTTGTTGGGCGCAGCGGCGGCGGAGG
AGGATTGGGAGAGAGTGGAGGAGGCGTACGAAGAAGCGCGTCGACAGCTG
AAGCAGGGAAAGATGCCTAGTCGCGCCTATGCATTCGTGGAGACTTGTTA
CAGGAAAATCAAGTCGACGAAGGAATTGAAGGAGGGAAGGAGGGAGGGAG
GGAAGGAGGGAAAGAGGGAGGGTGGGGTGGTCCCGAGTCGGCCGGCGGTG
GCGGGAGCCCGACGTGTGTAACGGGCACTCCTTCCCTCCCTCCTCACCGA
TGAAGAGCCCTATCTCGTCGTCCTCCGGGCCTGCGTGGAAGCCGGCGACG
ACGTCACGGCCCGCAGCGTCCTGCAACTGATGCCCTCGCCATCCCCTGGG
CCCTCCCTCTCGGCCTTCAACCTTCTCCTCCACCTCCACGCTAAGAAGGG
AGAGACCCTAAGTGCCGAGCGTGTGCTGGCGCAGATTGCTCAGAACGGCC
TCTCCCCCTCCCTCTCGTCCTATAACACCCTCCTCCATGCCTATGTCCGA
CGGGCATCCCGCGCCCGGAGAGTCAGCCAAGGAGAGCAGAAGCGGGTCGA
GGCCGTGTACAAGGCTTTACGGAGGTCGTCTCCCCCTTCCCTCCCTTCCT
CCCTCGCGTCCTCGTCATTGAGGCCGGACTCCTACACCCTGACGGCGATG
TTGCGGTGGTTGCAGCAAGTCAGCCGGGCCGCGCACAATGCAGGCCTTCG
CCACCCGCCGCGATGTCGACGGGGCTGAAGCCGTCTTTGCGCGCATGAAG
GCCCAAGGCCTCTCACCTGACATCGTCCCTTATTCTATCCTATTAAATCT
CCACGCCAACCGAGGAGACGTGGCGAAGGCCGAGGAGACTTTTAAAGAGA
TGAAAGAGGTCGGCAATTTACCGAGGAGCACCCGTGCGTATACGGCCCTG
ATGAAGGCCTATATGAAAAGAAAGGACACAGAGGGGGCAGAGGACGTATT
GTTTCGGATGGCAGCAGCAGGAGAGACGCCCGATGTTCACGCGTACACCA
TCTTGATGAGGGCGTACGGAAAGAGAGGGGACATCCAAGGCGCAGAAGAC
GTTATGAGAAGGGTGTTGCTGGCGGTGGAGGGAGGGAAGGAGGGAGGGAG
GGAGGGAGGGGGAATGGAACCGCCCATCGCGAGATGTACCAGATCGTCTT
GAAAGACATCGAGACGTGGCTACCACCCGAGCGAAGGTCCAGTCAGCTCT
ACACGGCCTTGTTGGGCGCAGCGGCGGCGGAGGAGGATTGGGAGAGAGTG
GAGGAGGCGTACGAAGAAGCGCGTCGACAGCTGAAGCAGGGAAAGATGCC
TAGTCGCGCCTATGCATTCGTGGAGACTTGTTACAGGAAAATCAAGTCGA
CGAAGGAATTGAAGGAGGGAAGGAGGGAGGGAGGGAAGGAGGGAAAGAGG
GAGGGTGGGGTGGTCCCGAGTCGGCCGGCGGTGGCGGGAGCCCGACGTGT
GTAACGGGCACTCCTTCCCTCCCTCCTCACCGATGAAGAGCCCTATCTCG
TCGTCCTCCGGGCCTGCGTGGAAGCCGGCGACGACGTCACGGCCCGCAGC
GTCCTGCAACTGATGCCCTCGCCATCCCCTGGGCCCTCCCTCTCGGCCTT
CAACCTTCTCCTCCACCTCCACGCTAAGAAGGGAGAGACCCTAAGTGCCG
AGCGTGTGCTGGCGCAGATTGCTCAGAACGGCCTCTCCCCCTCCCTCTCG
TCCTATAACACCCTCCTCCATGCCTATGTCCGACGGGCATCCCGCGCCCG
GAGAGTCAGCCAAGGAGAGCAGAAGCGGGTCGAGGCCGTGTACAAGGCTT
TACGGAGGTCGTCTCCCCCTTCCCTCCCTTCCTCCCTCGCGTCCTCGTCA
TTGAGGCCGGACTCCTACACCCTGACGGCGATGTTGCGGTGGTTGCAGCA
AGTCAGCCGGGCCGCGCACAATGCAGGCCTTCGCCACCCGCCGCGATGTC
GACGGGGCTGAAGCCGTCTTTGCGCGCATGAAGGCCCAAGGCCTCTCACC
TGACATCGTCCCTTATTCTATCCTATTAAATCTCCACGCCAACCGAGGAG
ACGTGGCGAAGGCCGAGGAGACTTTTAAAGAGATGAAAGAGGTCGGCAAT
TTACCGAGGAGCACCCGTGCGTATACGGCCCTGATGAAGGCCTATATGAA
AAGAAAGGACACAGAGGGGGCAGAGGACGTATTGTTTCGGATGGCAGCAG
CAGGAGAGACGCCCGATGTTCACGCGTACACCATCTTGATGAGGGCGTAC
GGAAAGAGAGGGGACATCCAAGGCGCAGAAGACGTTATGAGAAGGGTGTT
GCTGGCGGTGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGGGAATG back to top
|