jgi.p|Nanoce1779_2|562515, mRNA_616 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562515
Unique NamemRNA_616
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_2:13486..14475 +

Link to JBrowse

Properties
Property NameValue
TranscriptId562601
TrackFilteredModels2
ProteinId562515
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:13486..14475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562515gene_616Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562515mRNA_616-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_616CDS_616Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_616 ID=mRNA_616|Name=jgi.p|Nanoce1779_2|562515|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGTCAGCTACTGCAGCACCCGCAGCCAGCAATGGCGGTCTCGCCGACAT
AGGCCAGGCACCATCCTCATCGTTTCTAACTTCCTCATCTCCTGCAAAGG
AGGAGAGCGGGGAATTGAAGCCACAATGGGTCTTGGATCTAGGTAGATCG
ATGGCCCGCAACAATCGAGATTCGCACAGCCGATACATTCAGCTGGCCAC
CGTGGGACCCCACCCCACCGATTCAAATATGGTGAAACCCTTTGTTCGCA
CCGTGGTCTTTCGAGGGTTCCACAACGGCGTTGATCGTCAGGATAAGCAC
CTGGTCAAGATGATCACCGACTCGCGCAGTGAAAAAATAGCACATCTCTC
CTCTCACCCGCACGCAGAAATTGCCTGGTATTTCGTGAAAACCCGCGAGC
AGTACCGGCTCAGCGGCCGGATCGACGTCGTCTCCTCCCTCACCCATGAT
AAAGCCCTCCAAAGCGCGCGGAAGCAGCAGTGGGGGAACCTGTCGGATAA
CGCCAAGGTCCAATTCCTTTGGCCTTACCCTAAGCACTCCTCCCCTCCTG
ATCAAGACCCCGGTGTCTTCACGCCCGAACTGCCCACAGGCATAGCGGGT
GGGCCGCCTGACACGTTTTGTCTGTTGTTGATGCGTGTGGAGGAGGTGGA
TCACTTGGAGCTTAAGCCCAACCCGCAGCAGCGGACAGTGCACAGCAGGG
AGACAAGAGGTGAGGGGGAGGGAGAGGAGGGGCGGGGGGGTTGGAGGTTG
ACGAAGGTAAATCCTTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|562515

>mRNA_616-protein ID=mRNA_616-protein|Name=jgi.p|Nanoce1779_2|562515|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSATAAPAASNGGLADIGQAPSSSFLTSSSPAKEESGELKPQWVLDLGRS
MARNNRDSHSRYIQLATVGPHPTDSNMVKPFVRTVVFRGFHNGVDRQDKH
LVKMITDSRSEKIAHLSSHPHAEIAWYFVKTREQYRLSGRIDVVSSLTHD
KALQSARKQQWGNLSDNAKVQFLWPYPKHSSPPDQDPGVFTPELPTGIAG
GPPDTFCLLLMRVEEVDHLELKPNPQQRTVHSRETRGEGEGEEGRGGWRL
TKVNP*
back to top

mRNA from alignment at scaffold_2:13486..14475+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_616 ID=mRNA_616|Name=jgi.p|Nanoce1779_2|562515|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at scaffold_2:13486..14475+ (Nannochloropsis oceanica)
ATGTCAGCTACTGCAGCACCCGCAGCCAGCAATGGCGGTCTCGCCGACAT
AGGCCAGGCACCATCCTCATCGTTTCTAACTTCCTCATCTCCTGCAAAGG
AGGAGAGCGGGGAATTGAAGCCACAATGGGTCTTGGATCTAGGTAGATCG
ATGGCCCGCAACAATCGAGATTCGCACAGCCGATACATTCAGCTGGCCAC
CGTGGGACCCCACCCCACCGATTCAAATATGGTGAAACCCTTTGTTCGCA
CCGTGGTCTTTCGAGGGTTCCACAACGGCGTTGATCGTCAGGATAAGGTA
CAGATGAAGAAATGCTTTGGTATTGGTTCTTGAGGTTGCTAGACTCTCCT
CCATCTGTACAAGCCGTCAATCCGTAGCGCACTCTCCATCTCCATCCCCC
CTCACTTCCTTCCAAAGTCCACCACTTCCCACATTGCCTATCCTTGTTTC
ACTCCGTGTAAGGGTGCGATGCACAACTCACCTTTCCCTTCCCCCCCACC
CCCCCCCCTCTTTCTACAGCACCTGGTCAAGATGATCACCGACTCGCGCA
GTGAAAAAATAGCACATCTCTCCTCTCACCCGCACGCAGAAATTGCCTGG
TATTTCGTGAAAACCCGCGAGCAGTACCGGCTCAGCGGCCGGATCGACGT
CGTCTCCTCCCTCACCCATGATAAAGCCCTCCAAAGCGCGCGGAAGCAGC
AGTGGGGGAACCTGTCGGATAACGCCAAGGTCCAATTCCTTTGGCCTTAC
CCTAAGCACTCCTCCCCTCCTGATCAAGACCCCGGTGTCTTCACGCCCGA
ACTGCCCACAGGCATAGCGGGTGGGCCGCCTGACACGTTTTGTCTGTTGT
TGATGCGTGTGGAGGAGGTGGATCACTTGGAGCTTAAGCCCAACCCGCAG
CAGCGGACAGTGCACAGCAGGGAGACAAGAGGTGAGGGGGAGGGAGAGGA
GGGGCGGGGGGGTTGGAGGTTGACGAAGGTAAATCCTTAG
back to top

Coding sequence (CDS) from alignment at scaffold_2:13486..14475+

>mRNA_616 ID=mRNA_616|Name=jgi.p|Nanoce1779_2|562515|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_2:13486..14475+ (Nannochloropsis oceanica)
ATGTCAGCTACTGCAGCACCCGCAGCCAGCAATGGCGGTCTCGCCGACAT
AGGCCAGGCACCATCCTCATCGTTTCTAACTTCCTCATCTCCTGCAAAGG
AGGAGAGCGGGGAATTGAAGCCACAATGGGTCTTGGATCTAGGTAGATCG
ATGGCCCGCAACAATCGAGATTCGCACAGCCGATACATTCAGCTGGCCAC
CGTGGGACCCCACCCCACCGATTCAAATATGGTGAAACCCTTTGTTCGCA
CCGTGGTCTTTCGAGGGTTCCACAACGGCGTTGATCGTCAGGATAAGCAC
CTGGTCAAGATGATCACCGACTCGCGCAGTGAAAAAATAGCACATCTCTC
CTCTCACCCGCACGCAGAAATTGCCTGGTATTTCGTGAAAACCCGCGAGC
AGTACCGGCTCAGCGGCCGGATCGACGTCGTCTCCTCCCTCACCCATGAT
AAAGCCCTCCAAAGCGCGCGGAAGCAGCAGTGGGGGAACCTGTCGGATAA
CGCCAAGGTCCAATTCCTTTGGCCTTACCCTAAGCACTCCTCCCCTCCTG
ATCAAGACCCCGGTGTCTTCACGCCCGAACTGCCCACAGGCATAGCGGGT
GGGCCGCCTGACACGTTTTGTCTGTTGTTGATGCGTGTGGAGGAGGTGGA
TCACTTGGAGCTTAAGCCCAACCCGCAGCAGCGGACAGTGCACAGCAGGG
AGACAAGAGGTGAGGGGGAGGGAGAGGAGGGGCGGGGGGGTTGGAGGTTG
ACGAAGGTAAATCCTTAGATGTCAGCTACTGCAGCACCCGCAGCCAGCAA
TGGCGGTCTCGCCGACATAGGCCAGGCACCATCCTCATCGTTTCTAACTT
CCTCATCTCCTGCAAAGGAGGAGAGCGGGGAATTGAAGCCACAATGGGTC
TTGGATCTAGGTAGATCGATGGCCCGCAACAATCGAGATTCGCACAGCCG
ATACATTCAGCTGGCCACCGTGGGACCCCACCCCACCGATTCAAATATGG
TGAAACCCTTTGTTCGCACCGTGGTCTTTCGAGGGTTCCACAACGGCGTT
GATCGTCAGGATAAGCACCTGGTCAAGATGATCACCGACTCGCGCAGTGA
AAAAATAGCACATCTCTCCTCTCACCCGCACGCAGAAATTGCCTGGTATT
TCGTGAAAACCCGCGAGCAGTACCGGCTCAGCGGCCGGATCGACGTCGTC
TCCTCCCTCACCCATGATAAAGCCCTCCAAAGCGCGCGGAAGCAGCAGTG
GGGGAACCTGTCGGATAACGCCAAGGTCCAATTCCTTTGGCCTTACCCTA
AGCACTCCTCCCCTCCTGATCAAGACCCCGGTGTCTTCACGCCCGAACTG
CCCACAGGCATAGCGGGTGGGCCGCCTGACACGTTTTGTCTGTTGTTGAT
GCGTGTGGAGGAGGTGGATCACTTGGAGCTTAAGCCCAACCCGCAGCAGC
GGACAGTGCACAGCAGGGAGACAAGAGGTGAGGGGGAGGGAGAGGAGGGG
CGGGGGGGTTGGAGGTTGACGAAGGTAAATCCTTAG
back to top
Synonyms
Publications