jgi.p|Nanoce1779_2|593966, mRNA_6159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593966
Unique NamemRNA_6159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length612
Alignment locationscaffold_14:662149..663363 +

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Properties
Property NameValue
TranscriptId594052
TrackFilteredModels2
ProteinId593966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:662149..663363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593966gene_6159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593966mRNA_6159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6159CDS_6159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6159 ID=mRNA_6159|Name=jgi.p|Nanoce1779_2|593966|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
AGGACCCTTCTCGCTTCTACACACAGCCCGAACCGAAGAATGACCTATCC
CCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTACGCTCTTCTGGGTG
CAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCGGCAAGCCCGCCAAG
AAGGCTGCCGCGGACGATGACGACATGGACCTGTTTGGGGACGACGACGA
GGAGACCGCCAAGCCCACACTCTCCCGCGCGGAGCAAGTGGCAGCGATGA
AGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACAAAAAGCGAGACAGGAGC
CAGATCGTGCTGGAAGTCAAACCGACCGACACGGAGGTGGACCTTGACGA
GCTGTACACGACGATTAAGAAGGAGATCAGCCCGTCCGGCTTGACGTGGG
GCGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTCAAGCTCATC
ATCTCCATGGTGGTGTTCGACGACGAGGTCTCCATCGACGACGTGGTAGA
AAAGATCGAGGCCATGGAGGACCAGGTGCAGTCCGTCGACATCAACTCTT
TCAACAAGCTTTAATCTGCGGGCGGCGAGGAGGGACAAGGGAGGGGGAGC
GGGGGCATGTGG
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protein sequence of jgi.p|Nanoce1779_2|593966

>mRNA_6159-protein ID=mRNA_6159-protein|Name=jgi.p|Nanoce1779_2|593966|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPAKKAAADDDDMDLFG
DDDEETAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEV
DLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSID
DVVEKIEAMEDQVQSVDINSFNKL*
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mRNA from alignment at scaffold_14:662149..663363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6159 ID=mRNA_6159|Name=jgi.p|Nanoce1779_2|593966|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at scaffold_14:662149..663363+ (Nannochloropsis oceanica)
AGGACCCTTCTCGCTTCTACACACAGCCCGAACCGAAGAATGACCTATCC
CCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTACGCTCTTCTGGGTG
CAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCGGCAGTAAGTTGGAA
GGGAGGTAGGGGAAAGGGTGGGTACGTGGTTGCGGGGACGGATAGGTTCG
TTTTGTTCGATGACGAATGATGATGTAGACGGCGATGCGATGACGGGAAT
GACCCTCGTTGCAGGCCTCCTAGAGCTTTCATGTAGACGCAAATGAGGTG
GAATGAGAAGAGGGAGAGTGTCAGGGAGGAGGGGCATTTGCTGAGAAGCG
AACGGAGGCTGCATAAGCAGTCTCTCCCCTCGTTTTGTGTATGCGTCATC
GGTATCGTCGTGCGGATGTAGCTATTTTCTCCGGAGCTTATGCCTGGACA
TAGGCTCATACAGGAGGTTTTTGGTTTTACTCACCCCCACCATCTCCTTT
CCACCCCCCTCTTCCTTCCCCTCCACATTGACTACACGCGCCCTTCCGCA
CTACCTCGTCCCATCTCATTTCTCCACAGAGCCCGCCAAGAAGGCTGCCG
CGGTACGTGCATGTTTGCATAAGTCGATTTCTGCTCGTCTTCTTTCATAT
TTTATCCTCTGTCTTTTTCAACTATGTGAGCTGTTTATCGGCGTCGCCCT
CCTTCCCTCCCATCCGCCCTCTCATCGATCCTCCCTCCCTCTATCTTTTT
CTCCTTCAAAAACAGGACGATGACGACATGGACCTGTTTGGGGACGACGA
CGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGAGCAAGTGGCAGCGA
TGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACAAAAAGCGAGACAGG
AGCCAGATCGTGCTGGAAGTCAAACCGACCGACACGGAGGTGGACCTTGA
CGAGCTGTACACGACGATTAAGAAGGAGATCAGCCCGTCCGGCTTGACGT
GGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTCAAGCTC
ATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCCATCGACGACGTGGT
AGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTCCGTCGACATCAACT
CTTTCAACAAGCTTTAATCTGCGGGCGGCGAGGAGGGACAAGGGAGGGGG
AGCGGGGGCATGTGG
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Coding sequence (CDS) from alignment at scaffold_14:662149..663363+

>mRNA_6159 ID=mRNA_6159|Name=jgi.p|Nanoce1779_2|593966|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_14:662149..663363+ (Nannochloropsis oceanica)
ATGACCTATCCCCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTACGC
TCTTCTGGGTGCAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCGGCA
AGCCCGCCAAGAAGGCTGCCGCGGACGATGACGACATGGACCTGTTTGGG
GACGACGACGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGAGCAAGT
GGCAGCGATGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACAAAAAGC
GAGACAGGAGCCAGATCGTGCTGGAAGTCAAACCGACCGACACGGAGGTG
GACCTTGACGAGCTGTACACGACGATTAAGAAGGAGATCAGCCCGTCCGG
CTTGACGTGGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCT
TCAAGCTCATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCCATCGAC
GACGTGGTAGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTCCGTCGA
CATCAACTCTTTCAACAAGCTTTAAATGACCTATCCCCTTCAGTACGACG
AGCTCTCCGTGGCCTTGGGCTACGCTCTTCTGGGTGCAGCCGGCGCCCCT
GCGGCCAAGACAGCTCCCGCCGGCAAGCCCGCCAAGAAGGCTGCCGCGGA
CGATGACGACATGGACCTGTTTGGGGACGACGACGAGGAGACCGCCAAGC
CCACACTCTCCCGCGCGGAGCAAGTGGCAGCGATGAAGGCCGAGAAGGAG
GCCAAGGAGAAGGCGAACAAAAAGCGAGACAGGAGCCAGATCGTGCTGGA
AGTCAAACCGACCGACACGGAGGTGGACCTTGACGAGCTGTACACGACGA
TTAAGAAGGAGATCAGCCCGTCCGGCTTGACGTGGGGCGAGGGCTACAAC
AAGTCGCCCGTGGCATACGGCATCTTCAAGCTCATCATCTCCATGGTGGT
GTTCGACGACGAGGTCTCCATCGACGACGTGGTAGAAAAGATCGAGGCCA
TGGAGGACCAGGTGCAGTCCGTCGACATCAACTCTTTCAACAAGCTTTAA
ATGACCTATCCCCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTACGC
TCTTCTGGGTGCAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCGGCA
AGCCCGCCAAGAAGGCTGCCGCGGACGATGACGACATGGACCTGTTTGGG
GACGACGACGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGAGCAAGT
GGCAGCGATGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACAAAAAGC
GAGACAGGAGCCAGATCGTGCTGGAAGTCAAACCGACCGACACGGAGGTG
GACCTTGACGAGCTGTACACGACGATTAAGAAGGAGATCAGCCCGTCCGG
CTTGACGTGGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCT
TCAAGCTCATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCCATCGAC
GACGTGGTAGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTCCGTCGA
CATCAACTCTTTCAACAAGCTTTAA
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Synonyms
Publications