jgi.p|Nanoce1779_2|593963, mRNA_6158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593963
Unique NamemRNA_6158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length549
Alignment locationscaffold_14:660861..661858 -

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Properties
Property NameValue
TranscriptId594049
TrackFilteredModels2
ProteinId593963
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:660861..661858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593963gene_6158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593963mRNA_6158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6158CDS_6158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6158 ID=mRNA_6158|Name=jgi.p|Nanoce1779_2|593963|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
CAGACAGGAGGGAGAGCGTCAGAATCACGGGGCGGACGACGAGAAGTGCC
CGGGCAACGACGGCACGACACTCGGAACTCTTTCCTGCCTTGATATCACT
ACCGCTCCCGCCCCAGCCCCGCGACCCAAGCACGAAGCAATCAAGCTATC
AGTCACACCATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCT
CTTCATCAATGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAAT
ACGGACTAGACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAGACGCAG
ATAATTGGCTTGCTCAATGCCATCCAGTATTTGAAAGTTCCCCTGATTAC
CCTGAACATCGCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAAAGAG
AGGGAGGGAGAAAGGGGGGGGTGGGAATTAGTGAAGTAGGTAGGGAGGGA
GAGTAGTAGCTGGTTGTAAATGTGTGAGTCACTGAGCCTTATTTGATATG
ACCAAAAGAAAGTCGAAGCCAAAAAAGGAAATGCCTAACAACATTCAAA
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protein sequence of jgi.p|Nanoce1779_2|593963

>mRNA_6158-protein ID=mRNA_6158-protein|Name=jgi.p|Nanoce1779_2|593963|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIG
LLNAIQYLKVPLITLNIATVMVELLFGG*
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mRNA from alignment at scaffold_14:660861..661858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6158 ID=mRNA_6158|Name=jgi.p|Nanoce1779_2|593963|organism=Nannochloropsis oceanica|type=mRNA|length=998bp|location=Sequence derived from alignment at scaffold_14:660861..661858- (Nannochloropsis oceanica)
CAGACAGGAGGGAGAGCGTCAGAATCACGGGGCGGACGACGAGAAGTGCC
CGGGCAACGACGGCACGACACTCGGAACTCTTTCCTGCCTTGATATCACT
ACCGCTCCCGCCCCAGCCCCGCGACCCAAGCACGAAGCAATCAAGCTATC
AGTCACACCATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCT
CTTCATCAATGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAAT
GTACGTTTGGTGAGGGCATGACCCAGTCATCGCCATGCTATATCCCTTCT
CTCCTTCCCTCCCTCCTTCAAACCCCGTGACTACCTGGGGCACGCGCTTA
TGAAGAGACACGCCAGATGGAGCACTTCCGTGCACGTAAGGACCACAGTA
TGGTGGCGATCGTCTGTCCGCACCGTCAACTATCACTTTTCCTGTTTTCC
CCGTCACCACGGTCCTCACGTTCTCTGTCCCCACCCCCCTCCTCACTCGT
CTTCAAATCCCACAGACGGACTAGACGTGGCAGAGAGTTCAGACGCCACC
TCCATCAAGACGCAGATAATTGGCTTGCTCAATGCCATCCAGTATTTGAA
AGGTGCGCAGTCGAAGGAGGGAGGGAGAGGAGAGGAAACTTCCCCAAATG
AAGCACCACACTTGGGGCTCGGTGGCTGTGTTTGCAAGCAAAATAATCCA
CCGCACCGGATACGGAGATCACGAAGTCTAAAGCTTTCGTCTGCCTGTCT
CTTTTCCCTTTCTTCCCTCCCCACTTCACCCAACAGTTCCCCTGATTACC
CTGAACATCGCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAAAGAGA
GGGAGGGAGAAAGGGGGGGGTGGGAATTAGTGAAGTAGGTAGGGAGGGAG
AGTAGTAGCTGGTTGTAAATGTGTGAGTCACTGAGCCTTATTTGATATGA
CCAAAAGAAAGTCGAAGCCAAAAAAGGAAATGCCTAACAACATTCAAA
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Coding sequence (CDS) from alignment at scaffold_14:660861..661858-

>mRNA_6158 ID=mRNA_6158|Name=jgi.p|Nanoce1779_2|593963|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_14:660861..661858- (Nannochloropsis oceanica)
TTCCCCTGATTACCCTGAACATCGCCACGGTCATGGTCGAGCTTCTCTTT
GGCGGCTAAACGGACTAGACGTGGCAGAGAGTTCAGACGCCACCTCCATC
AAGACGCAGATAATTGGCTTGCTCAATGCCATCCAGTATTTGAAAGATGG
CTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCTCTTCATCAATGGC
GTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAATTTCCCCTGATTAC
CCTGAACATCGCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAAACGG
ACTAGACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAGACGCAGATAA
TTGGCTTGCTCAATGCCATCCAGTATTTGAAAGATGGCTTTCACGCTTTG
GAGTCTCTATAAGTCCGGTTTGCTCTTCATCAATGGCGTGGCTGTCCTGC
ACCGCAAGCGCTTCCTTCGGAAATTTCCCCTGATTACCCTGAACATCGCC
ACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAAACGGACTAGACGTGGCA
GAGAGTTCAGACGCCACCTCCATCAAGACGCAGATAATTGGCTTGCTCAA
TGCCATCCAGTATTTGAAAGATGGCTTTCACGCTTTGGAGTCTCTATAAG
TCCGGTTTGCTCTTCATCAATGGCGTGGCTGTCCTGCACCGCAAGCGCTT
CCTTCGGAAAT
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Synonyms
Publications