jgi.p|Nanoce1779_2|593960, mRNA_6157 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593960
Unique Name	mRNA_6157
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1757
Alignment location	scaffold_14:659084..660840 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594046
Track	FilteredModels2
ProteinId	593960

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:659084..660840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593960	gene_6157	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593960	mRNA_6157-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6157	CDS_6157	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:659084..660840+
coding sequence from alignment at scaffold_14:659084..660840+

mRNA sequence

>mRNA_6157 ID=mRNA_6157|Name=jgi.p|Nanoce1779_2|593960|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
ACAGAAAACAAAAACCAGCGAGACTAGTCTCTGTGCCAGCCTATATGCGT
CTTTCCCACACTTCCCCGCCCACGCGCATGCCCGCCTTCGTTCTTTTGAG
TCTCGCCCTAACCGTCGCCACTTGTACCACCAGCGCCGCCTCCCTCCTCC
GCGGCCAGCCCACCGACCGGCAGCTTGAAACGGTCTTAGACTTTCCGGGG
GTCAGCATTAATGTGAATAGCAACGGTGAGACTATTGTGGAGACGCCCTG
GGGCATGGTCATCACGGGAGAAAATGGTACGAGTGTGCATGGACCTAGGC
CCACGACCCTGGGCAACCTGAGCTGTGACACGCTGGGTGCGTGGGACACG
GACGACGAGCCTTCATGCACCAAGGCGTTGCCTGCCTTCTTTAATGCCAC
TGCTACCTTTGGTCAGGGTGACAAGCCCCGTGATCGAAGGAAGGTGATGG
ATGACTTTTGTGGGACGCCGTGCGGGAATGTTTGGACGGCGGGGGTGGTG
GCAGAGAGTCTGCACTGCACTCCTCCAGGCTCCCAGGGCCAGGAGCAGGT
TGATAGCAACAATATTGTGGACGTGTCTGACGGTGGAGTGGTGGTCAATG
TACCGGGCGTGACGGTCAATACCTCGCGAGGTGGAGGGATGAACGTACAG
GCGCCTGGGACGTCCGTGATCCGAGACCCTGCCCCTCGTCAGGTCCAGGT
GGAGGCCCCGGGGGCCATGGGGGTCGACATGGCTGCTGATGCGGCTTCCT
CTGATGCTGCCTCCACATCCAAGACGGAGTTTGCCAATAGCTTGAAGAGC
AACGACGACAAGGCTACTAACACCAGTACCAGCACCAGCACCAACACCAC
CAGCACCAGCACCAGCATCAAGGGCAAACCCACCTACCCCGCCGACTTCC
CGGGCCTGCGCATGGGCTGCATCAAGGACAAGAAGAGCGAGGAGTTCTGC
GCCATCAAAAGGGCATCCATAGCAGCCGCTGCCTCGCCGGCGTGTGACTT
TTATTTGTCGTGTTGCTACGCCCAGTACGCGAGGATGTTTAGTGCCATTC
CCTTGACGTTCGTGAAGGAGGTGGAGAAGGCATGTCCCGGCTCCACGGCC
TTCCTGGAGGGAGACTTGTGCACATAGGATAGAGCCAGCTTGGCTAGGTC
TCTTCCCCCGTCCTTCCTACCCTCTACCATTCCATCCTTTGAGCCTGCTT
GACGTAGGATGCGAGAAGGGGGAAGGCGAAAGGAAGCGGAGTAAGTGGGA
GTGTGACTGAGACTGGACGAGAGTCGCGGTGTGAAGGAGGGATCAAAGGA
CCCGGTAGTTGAAGGGGATAAGGTCTGTGAGAATAGAAGGGGTCATGTAG
AGACGAAGCGTAAAAGAGAAGGAGGGCTTAAGCGCTAAACACGGTGGGAA
AGAATATTCATTACGACCGAGGAATCGGGGAAGGGAGGGAAGAAGGGGAA
CGAGGCCATCTGAATAGACAAGCGAGGCGAGGATGAGAGCTTATATGAAA
TGTTCATCCTTGCGTGTGTGTGTATGTATGTGTAACCTGTAAAGGAATTA
ATGAAGAGAGGTGGAGGAGGCGGCAGCTCCTCAGTTATCCTCCTCCCTGT
TTGGCAACCAGCCAAGGCGCGGGTGGCGCGAAAATTGCAGAAAGAGCATA
GACAGGGATGAGCAAGAAGAGGGTGAAGCATGCACGAATGTTTGTATGCA
GAAATCTCGAAAGAAGAGAGCAACTTAAAAAGAGGAGGCACTAGGGAAAT
AGCTGGC

protein sequence of jgi.p|Nanoce1779_2|593960

>mRNA_6157-protein ID=mRNA_6157-protein|Name=jgi.p|Nanoce1779_2|593960|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MRLSHTSPPTRMPAFVLLSLALTVATCTTSAASLLRGQPTDRQLETVLDF
PGVSINVNSNGETIVETPWGMVITGENGTSVHGPRPTTLGNLSCDTLGAW
DTDDEPSCTKALPAFFNATATFGQGDKPRDRRKVMDDFCGTPCGNVWTAG
VVAESLHCTPPGSQGQEQVDSNNIVDVSDGGVVVNVPGVTVNTSRGGGMN
VQAPGTSVIRDPAPRQVQVEAPGAMGVDMAADAASSDAASTSKTEFANSL
KSNDDKATNTSTSTSTNTTSTSTSIKGKPTYPADFPGLRMGCIKDKKSEE
FCAIKRASIAAAASPACDFYLSCCYAQYARMFSAIPLTFVKEVEKACPGS
TAFLEGDLCT*

mRNA from alignment at scaffold_14:659084..660840+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6157 ID=mRNA_6157|Name=jgi.p|Nanoce1779_2|593960|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp|location=Sequence derived from alignment at scaffold_14:659084..660840+ (Nannochloropsis oceanica)
ACAGAAAACAAAAACCAGCGAGACTAGTCTCTGTGCCAGCCTATATGCGT
CTTTCCCACACTTCCCCGCCCACGCGCATGCCCGCCTTCGTTCTTTTGAG
TCTCGCCCTAACCGTCGCCACTTGTACCACCAGCGCCGCCTCCCTCCTCC
GCGGCCAGCCCACCGACCGGCAGCTTGAAACGGTCTTAGACTTTCCGGGG
GTCAGCATTAATGTGAATAGCAACGGTGAGACTATTGTGGAGACGCCCTG
GGGCATGGTCATCACGGGAGAAAATGGTACGAGTGTGCATGGACCTAGGC
CCACGACCCTGGGCAACCTGAGCTGTGACACGCTGGGTGCGTGGGACACG
GACGACGAGCCTTCATGCACCAAGGCGTTGCCTGCCTTCTTTAATGCCAC
TGCTACCTTTGGTCAGGGTGACAAGCCCCGTGATCGAAGGAAGGTGATGG
ATGACTTTTGTGGGACGCCGTGCGGGAATGTTTGGACGGCGGGGGTGGTG
GCAGAGAGTCTGCACTGCACTCCTCCAGGCTCCCAGGGCCAGGAGCAGGT
TGATAGCAACAATATTGTGGACGTGTCTGACGGTGGAGTGGTGGTCAATG
TACCGGGCGTGACGGTCAATACCTCGCGAGGTGGAGGGATGAACGTACAG
GCGCCTGGGACGTCCGTGATCCGAGACCCTGCCCCTCGTCAGGTCCAGGT
GGAGGCCCCGGGGGCCATGGGGGTCGACATGGCTGCTGATGCGGCTTCCT
CTGATGCTGCCTCCACATCCAAGACGGAGTTTGCCAATAGCTTGAAGAGC
AACGACGACAAGGCTACTAACACCAGTACCAGCACCAGCACCAACACCAC
CAGCACCAGCACCAGCATCAAGGGCAAACCCACCTACCCCGCCGACTTCC
CGGGCCTGCGCATGGGCTGCATCAAGGACAAGAAGAGCGAGGAGTTCTGC
GCCATCAAAAGGGCATCCATAGCAGCCGCTGCCTCGCCGGCGTGTGACTT
TTATTTGTCGTGTTGCTACGCCCAGTACGCGAGGATGTTTAGTGCCATTC
CCTTGACGTTCGTGAAGGAGGTGGAGAAGGCATGTCCCGGCTCCACGGCC
TTCCTGGAGGGAGACTTGTGCACATAGGATAGAGCCAGCTTGGCTAGGTC
TCTTCCCCCGTCCTTCCTACCCTCTACCATTCCATCCTTTGAGCCTGCTT
GACGTAGGATGCGAGAAGGGGGAAGGCGAAAGGAAGCGGAGTAAGTGGGA
GTGTGACTGAGACTGGACGAGAGTCGCGGTGTGAAGGAGGGATCAAAGGA
CCCGGTAGTTGAAGGGGATAAGGTCTGTGAGAATAGAAGGGGTCATGTAG
AGACGAAGCGTAAAAGAGAAGGAGGGCTTAAGCGCTAAACACGGTGGGAA
AGAATATTCATTACGACCGAGGAATCGGGGAAGGGAGGGAAGAAGGGGAA
CGAGGCCATCTGAATAGACAAGCGAGGCGAGGATGAGAGCTTATATGAAA
TGTTCATCCTTGCGTGTGTGTGTATGTATGTGTAACCTGTAAAGGAATTA
ATGAAGAGAGGTGGAGGAGGCGGCAGCTCCTCAGTTATCCTCCTCCCTGT
TTGGCAACCAGCCAAGGCGCGGGTGGCGCGAAAATTGCAGAAAGAGCATA
GACAGGGATGAGCAAGAAGAGGGTGAAGCATGCACGAATGTTTGTATGCA
GAAATCTCGAAAGAAGAGAGCAACTTAAAAAGAGGAGGCACTAGGGAAAT
AGCTGGC

Coding sequence (CDS) from alignment at scaffold_14:659084..660840+

>mRNA_6157 ID=mRNA_6157|Name=jgi.p|Nanoce1779_2|593960|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_14:659084..660840+ (Nannochloropsis oceanica)
ATGCGTCTTTCCCACACTTCCCCGCCCACGCGCATGCCCGCCTTCGTTCT
TTTGAGTCTCGCCCTAACCGTCGCCACTTGTACCACCAGCGCCGCCTCCC
TCCTCCGCGGCCAGCCCACCGACCGGCAGCTTGAAACGGTCTTAGACTTT
CCGGGGGTCAGCATTAATGTGAATAGCAACGGTGAGACTATTGTGGAGAC
GCCCTGGGGCATGGTCATCACGGGAGAAAATGGTACGAGTGTGCATGGAC
CTAGGCCCACGACCCTGGGCAACCTGAGCTGTGACACGCTGGGTGCGTGG
GACACGGACGACGAGCCTTCATGCACCAAGGCGTTGCCTGCCTTCTTTAA
TGCCACTGCTACCTTTGGTCAGGGTGACAAGCCCCGTGATCGAAGGAAGG
TGATGGATGACTTTTGTGGGACGCCGTGCGGGAATGTTTGGACGGCGGGG
GTGGTGGCAGAGAGTCTGCACTGCACTCCTCCAGGCTCCCAGGGCCAGGA
GCAGGTTGATAGCAACAATATTGTGGACGTGTCTGACGGTGGAGTGGTGG
TCAATGTACCGGGCGTGACGGTCAATACCTCGCGAGGTGGAGGGATGAAC
GTACAGGCGCCTGGGACGTCCGTGATCCGAGACCCTGCCCCTCGTCAGGT
CCAGGTGGAGGCCCCGGGGGCCATGGGGGTCGACATGGCTGCTGATGCGG
CTTCCTCTGATGCTGCCTCCACATCCAAGACGGAGTTTGCCAATAGCTTG
AAGAGCAACGACGACAAGGCTACTAACACCAGTACCAGCACCAGCACCAA
CACCACCAGCACCAGCACCAGCATCAAGGGCAAACCCACCTACCCCGCCG
ACTTCCCGGGCCTGCGCATGGGCTGCATCAAGGACAAGAAGAGCGAGGAG
TTCTGCGCCATCAAAAGGGCATCCATAGCAGCCGCTGCCTCGCCGGCGTG
TGACTTTTATTTGTCGTGTTGCTACGCCCAGTACGCGAGGATGTTTAGTG
CCATTCCCTTGACGTTCGTGAAGGAGGTGGAGAAGGCATGTCCCGGCTCC
ACGGCCTTCCTGGAGGGAGACTTGTGCACATAG

Synonyms

Publications