jgi.p|Nanoce1779_2|82888, mRNA_6153 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|82888
Unique Name	mRNA_6153
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1410
Alignment location	scaffold_14:643362..645213 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	82974
Track	FilteredModels2
ProteinId	82888

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:643362..645213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|82888	gene_6153	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|82888	mRNA_6153-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6153	CDS_6153	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:643362..645213+
coding sequence from alignment at scaffold_14:643362..645213+

mRNA sequence

>mRNA_6153 ID=mRNA_6153|Name=jgi.p|Nanoce1779_2|82888|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
CTTTCCATCCCTCGCTTCCTCCCCCGCCCCCCCCCCCCCTAAGAATATTT
CCCTATCCGCAACGGCTTCGAGTCGGGGTGGCCTGGCCTCGAAGGGAGCT
ATCAAGGACTGCTGCCCGAGGCGGAGATAGGGAAAGAGGGAGGTAGGGCG
TTGTCAGCAGCAGCAGGAGAAGTGGTCATGGCGGTGATGGATGGGAAGGG
AGGGGTCGCTGTGGGGGGGAAAGAGGGAGGGACGGAGGAACGGAGGGAGG
GAGGGAGGGAGGAAGGGACGAAGCGAGTGCTGGTTGAGAGCAGCAACCAG
GAGGAAGACAAACTGGGGCATAGAGAGCTTGGGATGAAGGAGGAGGAGGA
GGGGGAGGTGATGGAAACCACTGGGCTGATGGGCGACATTTGGAAGCGCT
ACAGACGGCCGCCCCCGTACCACCGACCTCCTCCGCCGCCGCACGGCCCG
CCGGCGAAGCTTTGCTCGGTGACTTACAAGATGAATGTCAGCGAGCACGA
AGCCAAGGCAATTGACCTGGACCCCTATGACCAGGAGCTACTCGGCACCA
TCATGGTCCGCATCTGCAACTGCGGCTGCGCCCGCCAGGACAACCTCAAC
TCCTCCTCCAGCAGCCCGAGCCCGCCCTCCCCCCCACGCGTGGACTCGCT
GACCCTTATGTCGGAGATCTTGCGCGGGGCGCATATCGTGGTGGAGGAGG
ACCGCGGGGCGTTCTACTCGTGGTTCACGCACATGCAGGACTCGTACCGC
CGCACGTCGTCCCACCGCTCCATCGTGCCCATGTACGGCATCGACGAGGG
GTCCGTGCTCCGGACTATTTTGACAGGCCGCACCGGCGACGGACACACGT
GGTTTCAGTTCGAGGGGGCGGGCTGGGAACCGTTCAAAAAGCCGTTTGAG
TCCTTTCTTCATGCCGTTAATTACGTTCAGTACCGAGTCACAGGCAAGCA
GGTGGGGCCCCTGGGCGTCAGCGCCTTCACTGACCGCAGGAGGAGATTGT
TGTTCGAGCAGATGGAGAGGGACGACCCGAGGGGCAAGGAGAGGCCGCCG
TCGTTGGAGAGGGACATTGACAGAGCGGTGGGCAAAGCGATGGGCCTGCT
GTTTAAAAATGCCTCTTGTACCCTCCCCCCATCGTCCTCTTCCTCTTCCC
CTTCCCATTTGGCTGGGATTTCGAAAAGAGGGGGGGACGAAAAGAGGAAA
ATGTTGCGGCGGAAGGCCCAGGCATGAGGGAGGGAGGGAGTGGAACGGTG
GAGGAAGGGTGCCCACGCTTTTTAGAGGGGGCCTGAGAGCATGTCGGAAA
GGAGGAGGGTGGGGACGGGATATGGGGCAGATAGGGTAGGTGAGAGGGAG
GATGAGGGAGTGTGGTGGTGCTGTGCTCGCCCGTACATGCCTCTTGATTA
AAATGCTCCG

protein sequence of jgi.p|Nanoce1779_2|82888

>mRNA_6153-protein ID=mRNA_6153-protein|Name=jgi.p|Nanoce1779_2|82888|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MAVMDGKGGVAVGGKEGGTEERREGGREEGTKRVLVESSNQEEDKLGHRE
LGMKEEEEGEVMETTGLMGDIWKRYRRPPPYHRPPPPPHGPPAKLCSVTY
KMNVSEHEAKAIDLDPYDQELLGTIMVRICNCGCARQDNLNSSSSSPSPP
SPPRVDSLTLMSEILRGAHIVVEEDRGAFYSWFTHMQDSYRRTSSHRSIV
PMYGIDEGSVLRTILTGRTGDGHTWFQFEGAGWEPFKKPFESFLHAVNYV
QYRVTGKQVGPLGVSAFTDRRRRLLFEQMERDDPRGKERPPSLERDIDRA
VGKAMGLLFKNASCTLPPSSSSSSPSHLAGISKRGGDEKRKMLRRKAQA*

mRNA from alignment at scaffold_14:643362..645213+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6153 ID=mRNA_6153|Name=jgi.p|Nanoce1779_2|82888|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_14:643362..645213+ (Nannochloropsis oceanica)
CTTTCCATCCCTCGCTTCCTCCCCCGCCCCCCCCCCCCCTAAGAATATTT
CCCTATCCGCAACGGCTTCGAGTCGGGGTGGCCTGGCCTCGAAGGGAGCT
ATCAAGGACTGCTGCCCGAGGCGGAGATAGGGAAAGAGGGAGGTAGGGCG
TTGTCAGCAGCAGCAGGAGAAGTGGTCATGGCGGTGATGGATGGGAAGGG
AGGGGTCGCTGTGGGGGGGAAAGAGGGAGGGACGGAGGAACGGAGGGAGG
GAGGGAGGGAGGAAGGGACGAAGCGAGTGCTGGTTGAGAGCAGCAACCAG
GAGGAAGACAAACTGGGGCATAGAGAGCTTGGGATGAAGGAGGAGGAGGA
GGGGGAGGTGATGGAAACCACTGGGCTGATGGGCGACATTTGGAAGCGCT
ACAGACGGCCGCCCCCGTACCACCGACCTCCTCCGCCGCCGCACGGCCCG
CCGGCGAAGCTTTGCTCGGTGACTTACAAGATGAATGTCAGCGAGCACGA
AGCCAAGGTAAGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGAATATCT
CCATGTCTCTTTTTCGATGAAACCTTTGGTGAGCACGCTAGACACCACCA
GGCGCCTCAAGTTCACAAACCCCCCCCCCCGCCCCCTCCTCGTCCCTCCC
TCCCAGGCAATTGACCTGGACCCCTATGACCAGGAGCTACTCGGCACCAT
CATGGTCCGCATCTGCAACTGCGGCTGCGCCCGCCAGGACAACCTCAACT
CCTCCTCCAGCAGCCCGAGCCCGCCCTCCCCCCCACGCGTGGACTCGCTG
ACCCTTATGTCGGAGATCTTGCGCGGGGCGCATATCGTGGTGGAGGAGGA
CCGCGGGGCGTTCTACTCGTGGTTCACGCACATGCAGGACTCGTACCGCC
GCACGTCGTCCCACCGCTCCATCGTGCCCATGTACGGCATCGACGAGGGG
TCCGTGCTCCGGACTATTTTGACAGGTGAGGAGGTCTTGACTGCCCTGCC
CTCCCTCTCTACCCCCCTCCCTCCTTGGAGCCCTTCCTCCTTAAATGCTC
TCTGTGCTGACTCTATCTCCACGCTATGACTTACACGTTTTCACGGAATA
TCCACCTACGGGCGAACCGCAGCATACAACATTTCACCCCTCCCTCCCTC
CCTCTCTCTCTTCTTTCAGGCCGCACCGGCGACGGACACACGTGGTTTCA
GTTCGAGGGGGCGGGCTGGGAACCGTTCAAAAAGCCGTTTGAGTCCTTTC
TTCATGCCGTTAATTACGTTCAGTACCGAGTCACAGGCAAGCAGGTGGGG
CCCCTGGGCGTCAGCGCCTTCACTGACCGCAGGCCCATCAGGCTGCGATT
CGACGGCTGTCTGGATGCGGGGGTCGAGGGGGAGAGGGAGGAAGATGCAG
GAAGAGAGGGAGGGCAAGAAGGGAGGGGCAGGAGGAGATTGTTGTTCGAG
CAGATGGAGAGGGACGACCCGAGGGGCAAGGAGAGGCCGCCGTCGTTGGA
GAGGGACATTGACAGAGCGGTGGGCAAAGCGATGGGCCTGCTGTTTAAAA
ATGCCTCTTGTACCCTCCCCCCATCGTCCTCTTCCTCTTCCCCTTCCCAT
TTGGCTGGGATTTCGAAAAGAGGGGGGGACGAAAAGAGGAAAATGTTGCG
GCGGAAGGCCCAGGCATGAGGGAGGGAGGGAGTGGAACGGTGGAGGAAGG
GTGCCCACGCTTTTTAGAGGGGGCCTGAGAGCATGTCGGAAAGGAGGAGG
GTGGGGACGGGATATGGGGCAGATAGGGTAGGTGAGAGGGAGGATGAGGG
AGTGTGGTGGTGCTGTGCTCGCCCGTACATGCCTCTTGATTAAAATGCTC
CG

Coding sequence (CDS) from alignment at scaffold_14:643362..645213+

>mRNA_6153 ID=mRNA_6153|Name=jgi.p|Nanoce1779_2|82888|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_14:643362..645213+ (Nannochloropsis oceanica)
ATGGCGGTGATGGATGGGAAGGGAGGGGTCGCTGTGGGGGGGAAAGAGGG
AGGGACGGAGGAACGGAGGGAGGGAGGGAGGGAGGAAGGGACGAAGCGAG
TGCTGGTTGAGAGCAGCAACCAGGAGGAAGACAAACTGGGGCATAGAGAG
CTTGGGATGAAGGAGGAGGAGGAGGGGGAGGTGATGGAAACCACTGGGCT
GATGGGCGACATTTGGAAGCGCTACAGACGGCCGCCCCCGTACCACCGAC
CTCCTCCGCCGCCGCACGGCCCGCCGGCGAAGCTTTGCTCGGTGACTTAC
AAGATGAATGTCAGCGAGCACGAAGCCAAGGCAATTGACCTGGACCCCTA
TGACCAGGAGCTACTCGGCACCATCATGGTCCGCATCTGCAACTGCGGCT
GCGCCCGCCAGGACAACCTCAACTCCTCCTCCAGCAGCCCGAGCCCGCCC
TCCCCCCCACGCGTGGACTCGCTGACCCTTATGTCGGAGATCTTGCGCGG
GGCGCATATCGTGGTGGAGGAGGACCGCGGGGCGTTCTACTCGTGGTTCA
CGCACATGCAGGACTCGTACCGCCGCACGTCGTCCCACCGCTCCATCGTG
CCCATGTACGGCATCGACGAGGGGTCCGTGCTCCGGACTATTTTGACAGG
CCGCACCGGCGACGGACACACGTGGTTTCAGTTCGAGGGGGCGGGCTGGG
AACCGTTCAAAAAGCCGTTTGAGTCCTTTCTTCATGCCGTTAATTACGTT
CAGTACCGAGTCACAGGCAAGCAGGTGGGGCCCCTGGGCGTCAGCGCCTT
CACTGACCGCAGGAGGAGATTGTTGTTCGAGCAGATGGAGAGGGACGACC
CGAGGGGCAAGGAGAGGCCGCCGTCGTTGGAGAGGGACATTGACAGAGCG
GTGGGCAAAGCGATGGGCCTGCTGTTTAAAAATGCCTCTTGTACCCTCCC
CCCATCGTCCTCTTCCTCTTCCCCTTCCCATTTGGCTGGGATTTCGAAAA
GAGGGGGGGACGAAAAGAGGAAAATGTTGCGGCGGAAGGCCCAGGCATGA
ATGGCGGTGATGGATGGGAAGGGAGGGGTCGCTGTGGGGGGGAAAGAGGG
AGGGACGGAGGAACGGAGGGAGGGAGGGAGGGAGGAAGGGACGAAGCGAG
TGCTGGTTGAGAGCAGCAACCAGGAGGAAGACAAACTGGGGCATAGAGAG
CTTGGGATGAAGGAGGAGGAGGAGGGGGAGGTGATGGAAACCACTGGGCT
GATGGGCGACATTTGGAAGCGCTACAGACGGCCGCCCCCGTACCACCGAC
CTCCTCCGCCGCCGCACGGCCCGCCGGCGAAGCTTTGCTCGGTGACTTAC
AAGATGAATGTCAGCGAGCACGAAGCCAAGGCAATTGACCTGGACCCCTA
TGACCAGGAGCTACTCGGCACCATCATGGTCCGCATCTGCAACTGCGGCT
GCGCCCGCCAGGACAACCTCAACTCCTCCTCCAGCAGCCCGAGCCCGCCC
TCCCCCCCACGCGTGGACTCGCTGACCCTTATGTCGGAGATCTTGCGCGG
GGCGCATATCGTGGTGGAGGAGGACCGCGGGGCGTTCTACTCGTGGTTCA
CGCACATGCAGGACTCGTACCGCCGCACGTCGTCCCACCGCTCCATCGTG
CCCATGTACGGCATCGACGAGGGGTCCGTGCTCCGGACTATTTTGACAGG
CCGCACCGGCGACGGACACACGTGGTTTCAGTTCGAGGGGGCGGGCTGGG
AACCGTTCAAAAAGCCGTTTGAGTCCTTTCTTCATGCCGTTAATTACGTT
CAGTACCGAGTCACAGGCAAGCAGGTGGGGCCCCTGGGCGTCAGCGCCTT
CACTGACCGCAGGAGGAGATTGTTGTTCGAGCAGATGGAGAGGGACGACC
CGAGGGGCAAGGAGAGGCCGCCGTCGTTGGAGAGGGACATTGACAGAGCG
GTGGGCAAAGCGATGGGCCTGCTGTTTAAAAATGCCTCTTGTACCCTCCC
CCCATCGTCCTCTTCCTCTTCCCCTTCCCATTTGGCTGGGATTTCGAAAA
GAGGGGGGGACGAAAAGAGGAAAATGTTGCGGCGGAAGGCCCAGGCATGA
ATGGCGGTGATGGATGGGAAGGGAGGGGTCGCTGTGGGGGGGAAAGAGGG
AGGGACGGAGGAACGGAGGGAGGGAGGGAGGGAGGAAGGGACGAAGCGAG
TGCTGGTTGAGAGCAGCAACCAGGAGGAAGACAAACTGGGGCATAGAGAG
CTTGGGATGAAGGAGGAGGAGGAGGGGGAGGTGATGGAAACCACTGGGCT
GATGGGCGACATTTGGAAGCGCTACAGACGGCCGCCCCCGTACCACCGAC
CTCCTCCGCCGCCGCACGGCCCGCCGGCGAAGCTTTGCTCGGTGACTTAC
AAGATGAATGTCAGCGAGCACGAAGCCAAGGCAATTGACCTGGACCCCTA
TGACCAGGAGCTACTCGGCACCATCATGGTCCGCATCTGCAACTGCGGCT
GCGCCCGCCAGGACAACCTCAACTCCTCCTCCAGCAGCCCGAGCCCGCCC
TCCCCCCCACGCGTGGACTCGCTGACCCTTATGTCGGAGATCTTGCGCGG
GGCGCATATCGTGGTGGAGGAGGACCGCGGGGCGTTCTACTCGTGGTTCA
CGCACATGCAGGACTCGTACCGCCGCACGTCGTCCCACCGCTCCATCGTG
CCCATGTACGGCATCGACGAGGGGTCCGTGCTCCGGACTATTTTGACAGG
CCGCACCGGCGACGGACACACGTGGTTTCAGTTCGAGGGGGCGGGCTGGG
AACCGTTCAAAAAGCCGTTTGAGTCCTTTCTTCATGCCGTTAATTACGTT
CAGTACCGAGTCACAGGCAAGCAGGTGGGGCCCCTGGGCGTCAGCGCCTT
CACTGACCGCAGGAGGAGATTGTTGTTCGAGCAGATGGAGAGGGACGACC
CGAGGGGCAAGGAGAGGCCGCCGTCGTTGGAGAGGGACATTGACAGAGCG
GTGGGCAAAGCGATGGGCCTGCTGTTTAAAAATGCCTCTTGTACCCTCCC
CCCATCGTCCTCTTCCTCTTCCCCTTCCCATTTGGCTGGGATTTCGAAAA
GAGGGGGGGACGAAAAGAGGAAAATGTTGCGGCGGAAGGCCCAGGCATGA
ATGGCGGTGATGGATGGGAAGGGAGGGGTCGCTGTGGGGGGGAAAGAGGG
AGGGACGGAGGAACGGAGGGAGGGAGGGAGGGAGGAAGGGACGAAGCGAG
TGCTGGTTGAGAGCAGCAACCAGGAGGAAGACAAACTGGGGCATAGAGAG
CTTGGGATGAAGGAGGAGGAGGAGGGGGAGGTGATGGAAACCACTGGGCT
GATGGGCGACATTTGGAAGCGCTACAGACGGCCGCCCCCGTACCACCGAC
CTCCTCCGCCGCCGCACGGCCCGCCGGCGAAGCTTTGCTCGGTGACTTAC
AAGATGAATGTCAGCGAGCACGAAGCCAAGGCAATTGACCTGGACCCCTA
TGACCAGGAGCTACTCGGCACCATCATGGTCCGCATCTGCAACTGCGGCT
GCGCCCGCCAGGACAACCTCAACTCCTCCTCCAGCAGCCCGAGCCCGCCC
TCCCCCCCACGCGTGGACTCGCTGACCCTTATGTCGGAGATCTTGCGCGG
GGCGCATATCGTGGTGGAGGAGGACCGCGGGGCGTTCTACTCGTGGTTCA
CGCACATGCAGGACTCGTACCGCCGCACGTCGTCCCACCGCTCCATCGTG
CCCATGTACGGCATCGACGAGGGGTCCGTGCTCCGGACTATTTTGACAGG
CCGCACCGGCGACGGACACACGTGGTTTCAGTTCGAGGGGGCGGGCTGGG
AACCGTTCAAAAAGCCGTTTGAGTCCTTTCTTCATGCCGTTAATTACGTT
CAGTACCGAGTCACAGGCAAGCAGGTGGGGCCCCTGGGCGTCAGCGCCTT
CACTGACCGCAGGAGGAGATTGTTGTTCGAGCAGATGGAGAGGGACGACC
CGAGGGGCAAGGAGAGGCCGCCGTCGTTGGAGAGGGACATTGACAGAGCG
GTGGGCAAAGCGATGGGCCTGCTGTTTAAAAATGCCTCTTGTACCCTCCC
CCCATCGTCCTCTTCCTCTTCCCCTTCCCATTTGGCTGGGATTTCGAAAA
GAGGGGGGGACGAAAAGAGGAAAATGTTGCGGCGGAAGGCCCAGGCATGA

Synonyms

Publications