jgi.p|Nanoce1779_2|593923, mRNA_6151 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593923
Unique Name	mRNA_6151
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2695
Alignment location	scaffold_14:639610..642657 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594009
Track	FilteredModels2
ProteinId	593923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:639610..642657 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593923	gene_6151	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593923	mRNA_6151-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6151	CDS_6151	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:639610..642657+
coding sequence from alignment at scaffold_14:639610..642657+

mRNA sequence

>mRNA_6151 ID=mRNA_6151|Name=jgi.p|Nanoce1779_2|593923|organism=Nannochloropsis oceanica|type=mRNA|length=2695bp
AAAGTGAGTGACGACATCCTGGTGGTGCCTTTGGAGGATAGAGGGCCTGA
AGCGAGAGGGAGGGAGGGAGGGAAGGAGGGTTGGAAGAATGTAAAGAGCG
CGGTGGTAGTGTTTAAGCATGGGTCGGTCGTGTTCTTCAACGTGGAGGAT
GACAAGCAGGCGAGGTACTTGCACGCCATGACGCGGCATTGCGGAGAGGT
GGTACCGCAGTCACACAGGTTTCGAGAGACCCTGGAATGCCGCCTTCGGC
CATGGCAGGAGAAGTACCACGAGATGGGCCAAGATGTGGTGCACCTCCGC
GAGCTCAACGAGGACTCCATCAAGGTGGTGGCTGATGTAATAGGGCACAG
CGTCGCCTTGAACTTTTATAATAAGAAGGCGGATAGGATGCTGGAGGACT
TCAGAGTACTGAATAACAGTGTGGAGGGATCGGGGGTGTTCACGGAGATG
GATAAGAAGGATTTGTTCAAGCTAGTGGCGCTGAACAACAAGATTCTAAC
CGACGCCATGTCGTCGGGCCTGCTCGAGCAGTCCAAGCCCGCTTGGAACT
TCAATCGCTTGGACGCCCTGTGGAATGATTTGAGGCATGAATTCAGCATT
GGCGATCGGTTCGGCAAGGTCGAGCACAAGATCACGCACGTCCAGAGCAA
TACCAAATTCTTCCTCGAGGTCCTCAACCACCAGAAGAGCAACAAGTTGG
AGTGGATCATCATCGTCTTAATCGCGGCAGAGATCGTTTTGTCGTGCATT
GACCTCTACCACCAGATTTTGGTGTAGTGGTCACAAGATCATATGGTAAT
GGAGGCGTGTGGATGATGCTGGTGCTGGAGGGTAGTTTGTATAGCTAGAA
CATTGAATGGTATGGAGGAGGTAATGAAATTTAATATAGAAGTATACGTC
AAGACAAGCTCCCCTACTGTTTTCCATTCTTTTCTCTGCGTGTCCTCCAC
TGTCTAAGGACATAGCGTTATTGAGTCTTGATCTCACTTACATCCTAGGA
GGAAAAATAAAAGAGATGGTTCGTGTGGAAAATATTAGAACAGATAAAAT
AAAAAATAGAAAATAAAAGATAATATGAACATAAAGAAAGACAAGGACGG
ATCGAAAGTAACGAGATCATCGGTCCCAACCCAGGCACTGACGCACGACA
TGGACGCACACAGCATAGGCAGGAGACATTGAGGTTGGTTAGGGATCCAA
GATGGTTGCCAATAGAAGGCACTAAGAAATTACCCCCTAAACGGTAACTT
GAGCTTTCCAAGCACATGTAACTCCAGACATACGGTAATGAACTTCTTAG
ATCCCTAGCTTAATTCTTTATTCTCCATGCTTAGAATCACACATCTTGCC
ATAGTTTTTAAACCCCTTCAGTGACGAGACTGTCACGTGTTGAATCTACA
TCTGTAGAACACATGAATTCTCTGAAAAATCATTTTTAATGAAAATAAAT
TCACGTATTAAATTCTTACAAAACGTCAAACATGTGCCAATATAAGTCGT
AAATTGCGTTTTGAATGGTAAACAATACTATGAAGAGCAGAAAATGATGT
GGAGGCTCCTCGTATCTGCCTTTGGCTCCAAGCAATTATTTCAATATCGA
AATCGAGCTGCTCAAGGCCAAGCACGATAAGGCCAAACACGCAAATCATG
CAGCCATAGCAGCCTAATTTTGCGACGCACATTCAGTTGGCATAGCCTGT
TCAGCCTATCGACCAAAACACGCAGAGCAGCGGGCTTGTGAGCTCTCCGC
TGCACGGGTTGACCCCATGTTCCGGTTACGATTTATCAGAGATAGCTGTG
TATACGGTCGGTGCCGGCGCCGCGCCGCCACACCGAAATCGAATTTAGAG
CTGTCTTCCTCGACGGAAGATGAGGCCGCGCGTCACACGGCACTGTCTCT
TACAGAGCTGGCATGGTGTCCCTGGGGTGGTTGGGCAGGACGTGTCGCAA
ATCGCTATTCGCCTGTGCATTCTCATCCAAGATCCCTGCGGCATCACCAG
AACCTGATTCGATATGCGCCCCCGTCCCTGTCTCCGACCCAATCTTTCCA
CTTACGATTCACATCCAACCACAGGCAATGCCCAAGCGAGGATAAGAAGG
GTAAAGAGCAGGTCATTAAATCGATGCCGGAGGAGCTGGAGCTTACTTCC
GGGAGATGGGATGGGGAAAATATGGTGAGTTGGGCAGATTCAGGTAGCAA
GGGGACTAACTATTACACAAAGGCTCACCAACCCCCGACCTAAACAACTC
ACGACCAGGGCCGCACGTCTTCTATCGAAGAGGACAGCGACGACAGCCTT
TCCGACGGAGCAGAGGAAGAGATTCAAACTTTGCTGTGGAATGACCAAAG
CATGCCCGTCCTTCCTGTCTCGTCACGCTCCCCCCTTGTCACCCCCCCGA
TTACTAGCAGCACCAGCACCAGCTCCAGCACGGAACGCCACACCCCAAGT
TGGGACAAGAACGAAAAGGCAAACACGAGTTTAATCGGCCTCAACATGCC
AGTCTTTGCGAATCTGCTATCCCCCCGCACGCGCTCCGGTCCTGCCGCCT
TGTTTCAGCGGGGTAGCAGTCCCTCTCCGCGTGGGGCGTCCTCGTCTTTC
CAACACCACCATTCATCGTATCACGCCCACTCTACAGCACGTGGAGGAGG
TGGGGGTGGTGGCAGGGACGGAGGAAGGGATAGAGTAAGGGAAAG

protein sequence of jgi.p|Nanoce1779_2|593923

>mRNA_6151-protein ID=mRNA_6151-protein|Name=jgi.p|Nanoce1779_2|593923|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MTRHCGEVVPQSHRFRETLECRLRPWQEKYHEMGQDVVHLRELNEDSIKV
VADVIGHSVALNFYNKKADRMLEDFRVLNNSVEGSGVFTEMDKKDLFKLV
ALNNKILTDAMSSGLLEQSKPAWNFNRLDALWNDLRHEFSIGDRFGKVEH
KITHVQSNTKFFLEVLNHQKSNKLEWIIIVLIAAEIVLSCIDLYHQILV*

mRNA from alignment at scaffold_14:639610..642657+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6151 ID=mRNA_6151|Name=jgi.p|Nanoce1779_2|593923|organism=Nannochloropsis oceanica|type=mRNA|length=3048bp|location=Sequence derived from alignment at scaffold_14:639610..642657+ (Nannochloropsis oceanica)
AAAGTGAGTGACGACATCCTGGTGGTGCCTTTGGAGGATAGAGGGCCTGA
AGCGAGAGGGAGGGAGGGAGGGAAGGAGGGTTGGAAGAATGTAAAGAGCG
CGGTGGTAGTGTTTAAGCATGGGTCGGTCGTGTTCTTCAACGTGGAGGAT
GACAAGCAGGCGAGGTACTTGCACGCCATGACGCGGCATTGCGGAGAGGT
GGTACCGCAGTCACACAGGTTTCGAGAGACCCTGGAATGCCGCCTTCGGC
CATGGCAGGAGAAGTACCACGAGATGGGCCAAGATGTGGTGCACCTCCGC
GAGCTCAACGAGGACTCCATCAAGGTGGTGGCTGATGTAATAGGGCACAG
CGTCGCCTTGAACTTTTATAATAAGAAGGCGGATAGGATGCTGGAGGACT
TCAGAGTACTGAATAACAGTGTGGAGGGATCGGGGGTGTTCACGGAGATG
GATAAGAAGGATTTGTTCAAGCTAGTAAGTCCAGAGGGAGCGATAGAGGG
AAGGAGGGAGGGGGGAGGAAGCGAGAGGGGTGGGGGGTACGACTGTAGGA
CACTCAGAGGACGATCTCATCTCTTCTGGAGCCGAATCATCGATGACAAA
AAATATTTATAATACTCCTCCTCCATCCGGTCCTCCCTCTCCTCCTCCAC
CCAGGTGGCGCTGAACAACAAGATTCTAACCGACGCCATGTCGTCGGGCC
TGCTCGAGCAGTCCAAGCCCGCTTGGAACTTCAATCGCTTGGACGCCCTG
TGGAATGATTTGAGGCATGAATTCAGCATTGGCGATCGGTGCGTGCTGAT
TCACACACGCTTTCTGTATCCTCCCTCTTTCCACATTTTAATTTATTTTC
TCCATTTCTTTTTGGTTTTCCTTTTCCCCTTTCCTTCACTTTTCTTTTCA
CGCCTCGGCGTAAATACTTACGTGCATCACCCTCCCTCTCTATTTTCCCC
TACCTCCTCAGGTTCGGCAAGGTCGAGCACAAGATCACGCACGTCCAGAG
CAATACCAAATTCTTCCTCGAGGTCCTCAACCACCAGAAGAGCAACAAGT
TGGAGTGGATCATCATCGTCTTAATCGCGGCAGAGATCGTTTTGTCGTGC
ATTGACCTCTACCACCAGATTTTGGTGTAGTGGTCACAAGATCATATGGT
AATGGAGGCGTGTGGATGATGCTGGTGCTGGAGGGTAGTTTGTATAGCTA
GAACATTGAATGGTATGGAGGAGGTAATGAAATTTAATATAGAAGTATAC
GTCAAGACAAGCTCCCCTACTGTTTTCCATTCTTTTCTCTGCGTGTCCTC
CACTGTCTAAGGACATAGCGTTATTGAGTCTTGATCTCACTTACATCCTA
GGAGGAAAAATAAAAGAGATGGTTCGTGTGGAAAATATTAGAACAGATAA
AATAAAAAATAGAAAATAAAAGATAATATGAACATAAAGAAAGACAAGGA
CGGATCGAAAGTAACGAGATCATCGGTCCCAACCCAGGCACTGACGCACG
ACATGGACGCACACAGCATAGGCAGGAGACATTGAGGTTGGTTAGGGATC
CAAGATGGTTGCCAATAGAAGGCACTAAGAAATTACCCCCTAAACGGTAA
CTTGAGCTTTCCAAGCACATGTAACTCCAGACATACGGTAATGAACTTCT
TAGATCCCTAGCTTAATTCTTTATTCTCCATGCTTAGAATCACACATCTT
GCCATAGTTTTTAAACCCCTTCAGTGACGAGACTGTCACGTGTTGAATCT
ACATCTGTAGAACACATGAATTCTCTGAAAAATCATTTTTAATGAAAATA
AATTCACGTATTAAATTCTTACAAAACGTCAAACATGTGCCAATATAAGT
CGTAAATTGCGTTTTGAATGGTAAACAATACTATGAAGAGCAGAAAATGA
TGTGGAGGCTCCTCGTATCTGCCTTTGGCTCCAAGCAATTATTTCAATAT
CGAAATCGAGCTGCTCAAGGCCAAGCACGATAAGGCCAAACACGCAAATC
ATGCAGCCATAGCAGCCTAATTTTGCGACGCACATTCAGTTGGCATAGCC
TGTTCAGCCTATCGACCAAAACACGCAGAGCAGCGGGCTTGTGAGCTCTC
CGCTGCACGGGTTGACCCCATGTTCCGGTTACGATTTATCAGAGATAGCT
GTGTATACGGTCGGTGCCGGCGCCGCGCCGCCACACCGAAATCGAATTTA
GAGCTGTCTTCCTCGACGGAAGATGAGGCCGCGCGTCACACGGCACTGTC
TCTTACAGAGCTGGCATGGTGTCCCTGGGGTGGTTGGGCAGGACGTGTCG
CAAATCGCTATTCGCCTGTGCATTCTCATCCAAGATCCCTGCGGCATCAC
CAGAACCTGATTCGATATGCGCCCCCGTCCCTGTCTCCGACCCAATCTTT
CCACTTACGATTCACATCCAACCACAGGCAATGCCCAAGCGAGGATAAGA
AGGGTAAAGAGCAGGTCATTAAATCGATGCCGGAGGAGCTGGAGCTTACT
TCCGGGAGATGGGATGGGGAAAATATGGTGAGTTGGGCAGATTCAGGTAG
CAAGGGGACTAACTATTACACAAAGGCTCACCAACCCCCGACCTAAACAA
CTCACGACCAGGGCCGCACGTCTTCTATCGAAGAGGACAGCGACGACAGC
CTTTCCGACGGAGCAGAGGAAGAGATTCAAACTTTGCTGTGGAATGACCA
AAGCATGCCCGTCCTTCCTGTCTCGTCACGCTCCCCCCTTGTCACCCCCC
CGATTACTAGCAGCACCAGCACCAGCTCCAGCACGGAACGCCACACCCCA
AGTTGGGACAAGAACGAAAAGGCAAACACGAGTTTAATCGGCCTCAACAT
GCCAGTCTTTGCGAATCTGCTATCCCCCCGCACGCGCTCCGGTCCTGCCG
CCTTGTTTCAGCGGGGTAGCAGTCCCTCTCCGCGTGGGGCGTCCTCGTCT
TTCCAACACCACCATTCATCGTATCACGCCCACTCTACAGCACGTGGAGG
AGGTGGGGGTGGTGGCAGGGACGGAGGAAGGGATAGAGTAAGGGAAAG

Coding sequence (CDS) from alignment at scaffold_14:639610..642657+

>mRNA_6151 ID=mRNA_6151|Name=jgi.p|Nanoce1779_2|593923|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_14:639610..642657+ (Nannochloropsis oceanica)
ATGACGCGGCATTGCGGAGAGGTGGTACCGCAGTCACACAGGTTTCGAGA
GACCCTGGAATGCCGCCTTCGGCCATGGCAGGAGAAGTACCACGAGATGG
GCCAAGATGTGGTGCACCTCCGCGAGCTCAACGAGGACTCCATCAAGGTG
GTGGCTGATGTAATAGGGCACAGCGTCGCCTTGAACTTTTATAATAAGAA
GGCGGATAGGATGCTGGAGGACTTCAGAGTACTGAATAACAGTGTGGAGG
GATCGGGGGTGTTCACGGAGATGGATAAGAAGGATTTGTTCAAGCTAGTG
GCGCTGAACAACAAGATTCTAACCGACGCCATGTCGTCGGGCCTGCTCGA
GCAGTCCAAGCCCGCTTGGAACTTCAATCGCTTGGACGCCCTGTGGAATG
ATTTGAGGCATGAATTCAGCATTGGCGATCGGTTCGGCAAGGTCGAGCAC
AAGATCACGCACGTCCAGAGCAATACCAAATTCTTCCTCGAGGTCCTCAA
CCACCAGAAGAGCAACAAGTTGGAGTGGATCATCATCGTCTTAATCGCGG
CAGAGATCGTTTTGTCGTGCATTGACCTCTACCACCAGATTTTGGTGTAG
ATGACGCGGCATTGCGGAGAGGTGGTACCGCAGTCACACAGGTTTCGAGA
GACCCTGGAATGCCGCCTTCGGCCATGGCAGGAGAAGTACCACGAGATGG
GCCAAGATGTGGTGCACCTCCGCGAGCTCAACGAGGACTCCATCAAGGTG
GTGGCTGATGTAATAGGGCACAGCGTCGCCTTGAACTTTTATAATAAGAA
GGCGGATAGGATGCTGGAGGACTTCAGAGTACTGAATAACAGTGTGGAGG
GATCGGGGGTGTTCACGGAGATGGATAAGAAGGATTTGTTCAAGCTAGTG
GCGCTGAACAACAAGATTCTAACCGACGCCATGTCGTCGGGCCTGCTCGA
GCAGTCCAAGCCCGCTTGGAACTTCAATCGCTTGGACGCCCTGTGGAATG
ATTTGAGGCATGAATTCAGCATTGGCGATCGGTTCGGCAAGGTCGAGCAC
AAGATCACGCACGTCCAGAGCAATACCAAATTCTTCCTCGAGGTCCTCAA
CCACCAGAAGAGCAACAAGTTGGAGTGGATCATCATCGTCTTAATCGCGG
CAGAGATCGTTTTGTCGTGCATTGACCTCTACCACCAGATTTTGGTGTAG
ATGACGCGGCATTGCGGAGAGGTGGTACCGCAGTCACACAGGTTTCGAGA
GACCCTGGAATGCCGCCTTCGGCCATGGCAGGAGAAGTACCACGAGATGG
GCCAAGATGTGGTGCACCTCCGCGAGCTCAACGAGGACTCCATCAAGGTG
GTGGCTGATGTAATAGGGCACAGCGTCGCCTTGAACTTTTATAATAAGAA
GGCGGATAGGATGCTGGAGGACTTCAGAGTACTGAATAACAGTGTGGAGG
GATCGGGGGTGTTCACGGAGATGGATAAGAAGGATTTGTTCAAGCTAGTG
GCGCTGAACAACAAGATTCTAACCGACGCCATGTCGTCGGGCCTGCTCGA
GCAGTCCAAGCCCGCTTGGAACTTCAATCGCTTGGACGCCCTGTGGAATG
ATTTGAGGCATGAATTCAGCATTGGCGATCGGTTCGGCAAGGTCGAGCAC
AAGATCACGCACGTCCAGAGCAATACCAAATTCTTCCTCGAGGTCCTCAA
CCACCAGAAGAGCAACAAGTTGGAGTGGATCATCATCGTCTTAATCGCGG
CAGAGATCGTTTTGTCGTGCATTGACCTCTACCACCAGATTTTGGTGTAG

Synonyms

Publications