jgi.p|Nanoce1779_2|593921, mRNA_6150 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593921
Unique NamemRNA_6150
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length439
Alignment locationscaffold_14:638704..639372 -

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Properties
Property NameValue
TranscriptId594007
TrackFilteredModels2
ProteinId593921
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:638704..639372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593921gene_6150Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593921mRNA_6150-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6150CDS_6150Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6150 ID=mRNA_6150|Name=jgi.p|Nanoce1779_2|593921|organism=Nannochloropsis oceanica|type=mRNA|length=439bp
AGGACGAGGAGGGGGAGGGATATGGTGCGGAGTGGGCTGGGATGTTTGCT
GTTGTTGATACCGCTGTTGCTGCTGCTGTTGCTGCTGCTGAGGGTGACTC
CCGGGTTGGCTGGAAAATGGTGCCATAGTTCCTGCCTGCAAAGGTGCTGC
CATCGAGGGCTGCTTGGACGCAGCAGAAAGTGTGTGTATGCACATTCTTT
GACTGCGGGCGGCGGAGGTGGTGTCCATGTTGGTGGTGCTATTGCTGCTG
CTGCGAGTCATGACCGCCACAGTGGCAGCAGTGGGGTGCGAAGCCCCCGA
GCTGGAGATAGACAGGCTGCCTGTGTTGCTGGTCCGCCGCCGCACCATCC
TGGCGCCCGTTGACGTTGCCAATGCGGTCAGTTGCTTGGTGGGGCGCAAA
ATGCATGTCTGCATGGCTGCGCTGGCCTGGACTGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|593921

>mRNA_6150-protein ID=mRNA_6150-protein|Name=jgi.p|Nanoce1779_2|593921|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MVRSGLGCLLLLIPLLLLLLLLLRVTPGLAGKWCHSSCLQRCCHRGLLGR
SRKCVYAHSLTAGGGGGVHVGGAIAAAASHDRHSGSSGVRSPRAGDRQAA
CVAGPPPHHPGAR*
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mRNA from alignment at scaffold_14:638704..639372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6150 ID=mRNA_6150|Name=jgi.p|Nanoce1779_2|593921|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at scaffold_14:638704..639372- (Nannochloropsis oceanica)
AGGACGAGGAGGGGGAGGGATATGGTGCGGAGTGGGCTGGGATGTTTGCT GTTGTTGATACCGCTGTTGCTGCTGCTGTTGCTGCTGCTGAGGGTGACTC CTTTTTTTTTGGGGGGGGGGTTTTGAGGTGGGGGGAGGTAAGCGAGGTGA GGGCTCACGATCTCGATGGGACCAGAGGCTTGAGACACAATCATGGAAAG CATGAGCGCCATGATTCAACAAGGTGCACTTCTCATACCTTGTAATGTTT TGAAGAATGCGGTGAAGGACAAACAATTAACACACATGAAGGAGGGAAAG GCATAGGACTTAGCACATACATCTACGTACCCGGGTTGGCTGGAAAATGG TGCCATAGTTCCTGCCTGCAAAGGTGCTGCCATCGAGGGCTGCTTGGACG CAGCAGAAAGTGTGTGTATGCACATTCTTTGACTGCGGGCGGCGGAGGTG GTGTCCATGTTGGTGGTGCTATTGCTGCTGCTGCGAGTCATGACCGCCAC AGTGGCAGCAGTGGGGTGCGAAGCCCCCGAGCTGGAGATAGACAGGCTGC CTGTGTTGCTGGTCCGCCGCCGCACCATCCTGGCGCCCGTTGACGTTGCC AATGCGGTCAGTTGCTTGGTGGGGCGCAAAATGCATGTCTGCATGGCTGC GCTGGCCTGGACTGCCTGT
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Coding sequence (CDS) from alignment at scaffold_14:638704..639372-

>mRNA_6150 ID=mRNA_6150|Name=jgi.p|Nanoce1779_2|593921|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_14:638704..639372- (Nannochloropsis oceanica)
CCGGGTTGGCTGGAAAATGGTGCCATAGTTCCTGCCTGCAAAGGTGCTGC
CATCGAGGGCTGCTTGGACGCAGCAGAAAGTGTGTGTATGCACATTCTTT
GACTGCGGGCGGCGGAGGTGGTGTCCATGTTGGTGGTGCTATTGCTGCTG
CTGCGAGTCATGACCGCCACAGTGGCAGCAGTGGGGTGCGAAGCCCCCGA
GCTGGAGATAGACAGGCTGCCTGTGTTGCTGGTCCGCCGCCGCACCATCC
TGGCGCCCGTTGAATGGTGCGGAGTGGGCTGGGATGTTTGCTGTTGTTGA
TACCGCTGTTGCTGCTGCTGTTGCTGCTGCTGAGGGTGACTCCCGGGTTG
GCTGGAAAATGGTGCCATAGTTCCTGCCTGCAAAGGTGCTGCCATCGAGG
GCTGCTTGGACGCAGCAGAAAGTGTGTGTATGCACATTCTTTGACTGCGG
GCGGCGGAGGTGGTGTCCATGTTGGTGGTGCTATTGCTGCTGCTGCGAGT
CATGACCGCCACAGTGGCAGCAGTGGGGTGCGAAGCCCCCGAGCTGGAGA
TAGACAGGCTGCCTGTGTTGCTGGTCCGCCGCCGCACCATCCTGGCGCCC
GTTGAATGGTGCGGAGTGGGCTGGGATGTTTGCTGTTGTTGATACCGCTG
TTGCTGCTGCTGTTGCTGCTGCTGAGGGTGACTC
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Synonyms
Publications