jgi.p|Nanoce1779_2|573527, mRNA_615 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573527
Unique NamemRNA_615
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1322
Alignment locationscaffold_2:11514..12835 +

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Properties
Property NameValue
TranscriptId573613
TrackFilteredModels2
ProteinId573527
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:11514..12835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573527gene_615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573527mRNA_615-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_615CDS_615Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_615 ID=mRNA_615|Name=jgi.p|Nanoce1779_2|573527|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
ACAGCAGCCATCCGCCATGTCATCCGATGCATTGAGTGGACTGCGCCTTG
GTGGTGGTACGGTGGAGGATGGGGAGGAGGATGGTGGCGAGACAGAGCGC
ATGTATTCCTGGGAGGGGGCTTTAGACATGTCCTGGGTAAACGTAAAGAT
GGACGAAGAGGGCCGACTCATCTCCGAGGGACAAGACCAAGACGAGCACC
TACGACGGCGACAGCACGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAA
TGTGTAAGAAGGGGACTGATCCGCTACCTCTTCCTTGGGCTCGACGCCAG
TGCCTCCATGAGGGAAATCGACTTAAAACCCGAACGCCTTCGCATGGCCC
TCAAACTCTGTCAAGAGTTCGTTAAGGAGTACTTCGACCAAAACCCTATC
TCACAGCTCGGTCTGATGGTGACCAAGCAAGGCGAAGCAGAACGCTTGAC
AGACCTGAGCGCGAACCCCAAATCCCACATTGCAAAGCTTCAAGACTACG
CCCTCCGGCATCGTGCCGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAG
CTTGCCTTGTCGTCCCTAAGAGCCATTCCTGACTACGGCAATCGAGAAGT
CGTGCTGATGTACGGAAGCCTGACCACCTGCGACCCCGGAGACATATTCG
AAACATTGAAAAAACTCGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGC
CTCTCCGCCGAGATGTACATCTGTCGTAAGGTCTGCGAGGACACCAACGG
CACCTATTCCATCGCCTTAGATGGAAAACACCTCGCAGACCTGCTCATGG
CTCAAGTCGCCCCTCCTCCCACCACCACCACCGCTGCCTCCAAAGGCCCC
CTGTACATGGACATGGTGCTCATGGGTTTCCCCAACCGCGTGCATACTCC
AAACGCCCCCACCCTTGCCTTTGACGGCGCAAACCCCCCTAAACCTACGA
CAGTCGCCTATGTCTGCCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCC
ACAGCCTGCAACATTTGCACGTTACCACTGGTCTCGTCCTCTCATCTCGC
CCGCTCCTACCACCACCTATTTCCCGTCACTCAATACACGGAGGTGCCAC
CAACCGAGCAAAAGGAGCTGGATACGTGTCATGCCTGCCTGCGGCACTTT
GATGTGGCCTCGCTGAAGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCG
CGTTTTTTGTTTGGACTGTGACATGTACATTCATGAGAGTTTGCACAACT
GCCCAGGGTGCTGTGGATGAAAGGGGGGAAGGGGTTGAAGGGAAAGAAAG
GAAATTTATCAAATTTAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|573527

>mRNA_615-protein ID=mRNA_615-protein|Name=jgi.p|Nanoce1779_2|573527|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MSSDALSGLRLGGGTVEDGEEDGGETERMYSWEGALDMSWVNVKMDEEGR
LISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMRE
IDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSAN
PKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYG
SLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIA
LDGKHLADLLMAQVAPPPTTTTAASKGPLYMDMVLMGFPNRVHTPNAPTL
AFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHH
LFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLD
CDMYIHESLHNCPGCCG*
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mRNA from alignment at scaffold_2:11514..12835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_615 ID=mRNA_615|Name=jgi.p|Nanoce1779_2|573527|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at scaffold_2:11514..12835+ (Nannochloropsis oceanica)
ACAGCAGCCATCCGCCATGTCATCCGATGCATTGAGTGGACTGCGCCTTG
GTGGTGGTACGGTGGAGGATGGGGAGGAGGATGGTGGCGAGACAGAGCGC
ATGTATTCCTGGGAGGGGGCTTTAGACATGTCCTGGGTAAACGTAAAGAT
GGACGAAGAGGGCCGACTCATCTCCGAGGGACAAGACCAAGACGAGCACC
TACGACGGCGACAGCACGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAA
TGTGTAAGAAGGGGACTGATCCGCTACCTCTTCCTTGGGCTCGACGCCAG
TGCCTCCATGAGGGAAATCGACTTAAAACCCGAACGCCTTCGCATGGCCC
TCAAACTCTGTCAAGAGTTCGTTAAGGAGTACTTCGACCAAAACCCTATC
TCACAGCTCGGTCTGATGGTGACCAAGCAAGGCGAAGCAGAACGCTTGAC
AGACCTGAGCGCGAACCCCAAATCCCACATTGCAAAGCTTCAAGACTACG
CCCTCCGGCATCGTGCCGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAG
CTTGCCTTGTCGTCCCTAAGAGCCATTCCTGACTACGGCAATCGAGAAGT
CGTGCTGATGTACGGAAGCCTGACCACCTGCGACCCCGGAGACATATTCG
AAACATTGAAAAAACTCGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGC
CTCTCCGCCGAGATGTACATCTGTCGTAAGGTCTGCGAGGACACCAACGG
CACCTATTCCATCGCCTTAGATGGAAAACACCTCGCAGACCTGCTCATGG
CTCAAGTCGCCCCTCCTCCCACCACCACCACCGCTGCCTCCAAAGGCCCC
CTGTACATGGACATGGTGCTCATGGGTTTCCCCAACCGCGTGCATACTCC
AAACGCCCCCACCCTTGCCTTTGACGGCGCAAACCCCCCTAAACCTACGA
CAGTCGCCTATGTCTGCCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCC
ACAGCCTGCAACATTTGCACGTTACCACTGGTCTCGTCCTCTCATCTCGC
CCGCTCCTACCACCACCTATTTCCCGTCACTCAATACACGGAGGTGCCAC
CAACCGAGCAAAAGGAGCTGGATACGTGTCATGCCTGCCTGCGGCACTTT
GATGTGGCCTCGCTGAAGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCG
CGTTTTTTGTTTGGACTGTGACATGTACATTCATGAGAGTTTGCACAACT
GCCCAGGGTGCTGTGGATGAAAGGGGGGAAGGGGTTGAAGGGAAAGAAAG
GAAATTTATCAAATTTAAAAAA
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Coding sequence (CDS) from alignment at scaffold_2:11514..12835+

>mRNA_615 ID=mRNA_615|Name=jgi.p|Nanoce1779_2|573527|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_2:11514..12835+ (Nannochloropsis oceanica)
ATGTCATCCGATGCATTGAGTGGACTGCGCCTTGGTGGTGGTACGGTGGA
GGATGGGGAGGAGGATGGTGGCGAGACAGAGCGCATGTATTCCTGGGAGG
GGGCTTTAGACATGTCCTGGGTAAACGTAAAGATGGACGAAGAGGGCCGA
CTCATCTCCGAGGGACAAGACCAAGACGAGCACCTACGACGGCGACAGCA
CGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAATGTGTAAGAAGGGGAC
TGATCCGCTACCTCTTCCTTGGGCTCGACGCCAGTGCCTCCATGAGGGAA
ATCGACTTAAAACCCGAACGCCTTCGCATGGCCCTCAAACTCTGTCAAGA
GTTCGTTAAGGAGTACTTCGACCAAAACCCTATCTCACAGCTCGGTCTGA
TGGTGACCAAGCAAGGCGAAGCAGAACGCTTGACAGACCTGAGCGCGAAC
CCCAAATCCCACATTGCAAAGCTTCAAGACTACGCCCTCCGGCATCGTGC
CGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAGCTTGCCTTGTCGTCCC
TAAGAGCCATTCCTGACTACGGCAATCGAGAAGTCGTGCTGATGTACGGA
AGCCTGACCACCTGCGACCCCGGAGACATATTCGAAACATTGAAAAAACT
CGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGCCTCTCCGCCGAGATGT
ACATCTGTCGTAAGGTCTGCGAGGACACCAACGGCACCTATTCCATCGCC
TTAGATGGAAAACACCTCGCAGACCTGCTCATGGCTCAAGTCGCCCCTCC
TCCCACCACCACCACCGCTGCCTCCAAAGGCCCCCTGTACATGGACATGG
TGCTCATGGGTTTCCCCAACCGCGTGCATACTCCAAACGCCCCCACCCTT
GCCTTTGACGGCGCAAACCCCCCTAAACCTACGACAGTCGCCTATGTCTG
CCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCCACAGCCTGCAACATTT
GCACGTTACCACTGGTCTCGTCCTCTCATCTCGCCCGCTCCTACCACCAC
CTATTTCCCGTCACTCAATACACGGAGGTGCCACCAACCGAGCAAAAGGA
GCTGGATACGTGTCATGCCTGCCTGCGGCACTTTGATGTGGCCTCGCTGA
AGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCGCGTTTTTTGTTTGGAC
TGTGACATGTACATTCATGAGAGTTTGCACAACTGCCCAGGGTGCTGTGG
ATGA
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Synonyms
Publications