|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 557136 |
| Track | FilteredModels2 |
| ProteinId | 557050 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:635796..638719 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6149 ID=mRNA_6149|Name=jgi.p|Nanoce1779_2|557050|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp
GGCCTGGACTGCCTGTCGCGTAATGATGGTGATGGTGAGGTGGATGATCT
TTTTTGAGTGGCGTGGGAGTGGACGTGCAAAGGCAAGGACTACGACGACA
AGCAGAGCTGGGTGGGCTTCTAAAAATGCATGCCAATACAGCTGTGTGCG
TAGAGTTGATTCTTGCCATGTTGATGAAATGCGGGCATATGCATTTGGGA
ACAGGCGCACGCAAGTTGCTGCGAGGCTCGCTGCCTGCCGAGTCCTTCGT
GAGACTCGCCACCTGAGCTTCATGTCTACTTTGTTTACATGTGCGTTGAT
GTATACATACAGTACCACCGCCTCCAGAGCCTCCTTCTCCACATTTTTTT
CGTCCTGATGACGGCGGCGGTCACGACTGCGTGTGTCCAGTCTTTACTAT
TTTCCCACCCTTCGCTCGATCCTAGGCAATTCCATAGGCTGGCCCCGTCG
AGGAATGCATAAATATTCATTGACAACGTCCCTCTCTTCCAAAATCATCT
TTTCCTCACATGACCATAGCCAACACATCTGCACAGAATAAGTAGGCCTC
GATTGAAAGGCGCGCTTGTGAAAAAGTCGCACAATTTCCGGGAGCCCAGC
AGCCTCAGGCCAGCAACTACGACAGTCCTGCACCTTCAGTCCATCAGCCC
CACCACGCTCCCTATGGCTTCTTACGCAGACGAAGACACGGTCGAACGCA
CTCTTTGCCAAATTCGGACCGTGCACGGCTTCAAGATCCCTCCCCGTCTT
AGTGCTGGGGGCTACCGAGCCTCCGACTGGAAGGAGGAAGTGTGGCAAGG
CGCCTTAAAGGTTGTGCAAAAGGGGTTGGACGCCGCCATCTTGCTGATTG
ACCCCAAAAATGGCTCACTCTTCGCCATGTGCCCCATCAAGGAAGGATCT
GTCGAACGCTGCGTCGACTCCAGCCGGTATTTTGTCTTGAAAATTCAAAA
TGCCTCGGGTCGACATGCCTTCGTGGGTGTGGCTTTCAATGAACGCGAGG
AGGCCTTTGACTTCAATGTGGCCATGCAGGAGTACGAGAAAGACAAAGCG
CGGACTGAGAGGTTGAGGACGAGGGGAAAGGAGAGTGAGGAGGAGGACGG
GAGGGAGGGAGGAGGGCCCAAGGTGGATTTGAGTCTGAAGGAAGGCGAAA
AGCTGACGATCAGGTTGCCCACCCGCGAGGGAGGGGTTGGGGCCACGACG
GGAGGGGAGAGGAAGAAGAGGGTGACAGGTGGTGGTGGGGGTATAACCAG
TGGGGGAGGTTTGTTGCCTCCACCGCCGGGGTCGTCGTGGGGAGGCTTGC
TTGCCCCCCCTGCCTCCGTCTCGTCAGCACCAGCGGTGAGGAGGGCACAA
ACGGGCGCGGCAGCTCATGATGACTTTCTGGCTGGGTCTGGCACTAGAGT
GACCGCAACGACGGGATGGAAAGATGGTGATGCTGTTGCTTCCCCCCCCC
CTTTTGCCCCCCTTGGCTCCTCGTTTGCTTCTTCCTCCTCTTCCTCCTCC
TCGGCGACAAGCAAGGACGACTTTGGCGGCTTCATGGCCCCTGTCAAGTC
CTCCCTCTCCCTCACCCCCACATTTTCTGCTTTTTCCAGCACCGGCTCTG
ACTCCGTGGACGTTGGCGGTGCTGCTCCTTGCTCCAAGAGTGCCACTGGC
CCGGAGTCTGCGAAACCCTCTCCCTTCGACAGCCTGAGTGCCCTCGGTGC
AGGCCTGCCGGGCATGACCAGCGGCAACAGCAACAGCAGCAAGAGCAGTG
ATCCTTTCGCGGACTTGCTGCCGTTCAGGTGAGTTGTCGGCGGCAGGAAA
GTGGAGGAAAAGAGGGAGGGATGGAGGGCAGGGAGGGCAGGGAAGGTTGA
AGCGAGGGAGGGGAGGGGAGGTTGTGATGTGTTGATGGTAGAGCGCCGTT
GCATAAATTTGATAGAGGAGATAGAAGGAAGCAAACGGGATAAACATAGT
ATATTACTGAGTCCAGACTAGAGACGGCAGCAACAGTAGGACGTAGCAGA
GCAACACGAGACAAAGCACCTTTGATTATCGACAGGAAGAGAATAGAGAG
CACGGACAGACTTGCTTACATACATACAACAAAATTTATGCATCGAAAAT
TATGTTTGCTCATATACAACCAACCAGCCGTCACGGAGGGGTAAGAGACG
ATGGAACGAGGAGGAAGCGGAGGACGGACAGACAGAAGAAAGGTGAAGAG
TGGAAAGGTAGGATGTGTGTGGAGGCACCCTGACTGTACTTTCATGGCTT
ATTTACGTGTGAGATGATAGACGTGTTAGATAACAACATGGAATACGATA
TTAAACATTTAGAGAAGAGCAGAGCTTTGCCCCAGAGAAAATCCGTACAC
AAACGAAATAACAAGAGAACATAAC back to topprotein sequence of jgi.p|Nanoce1779_2|557050 >mRNA_6149-protein ID=mRNA_6149-protein|Name=jgi.p|Nanoce1779_2|557050|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MASYADEDTVERTLCQIRTVHGFKIPPRLSAGGYRASDWKEEVWQGALKV
VQKGLDAAILLIDPKNGSLFAMCPIKEGSVERCVDSSRYFVLKIQNASGR
HAFVGVAFNEREEAFDFNVAMQEYEKDKARTERLRTRGKESEEEDGREGG
GPKVDLSLKEGEKLTIRLPTREGGVGATTGGERKKRVTGGGGGITSGGGL
LPPPPGSSWGGLLAPPASVSSAPAVRRAQTGAAAHDDFLAGSGTRVTATT
GWKDGDAVASPPPFAPLGSSFASSSSSSSSATSKDDFGGFMAPVKSSLSL
TPTFSAFSSTGSDSVDVGGAAPCSKSATGPESAKPSPFDSLSALGAGLPG
MTSGNSNSSKSSDPFADLLPFR* back to topmRNA from alignment at scaffold_14:635796..638719- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6149 ID=mRNA_6149|Name=jgi.p|Nanoce1779_2|557050|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at scaffold_14:635796..638719- (Nannochloropsis oceanica)
GGCCTGGACTGCCTGTCGCGTAATGATGGTGATGGTGAGGTGGATGATCT
TTTTTGAGTGGCGTGGGAGTGGACGTGCAAAGGCAAGGACTACGACGACA
AGCAGAGCTGGGTGGGCTTCTAAAAATGCATGCCAATACAGCTGTGTGCG
TAGAGTTGATTCTTGCCATGTTGATGAAATGCGGGCATATGCATTTGGGA
ACAGGCGCACGCAAGTTGCTGCGAGGCTCGCTGCCTGCCGAGTCCTTCGT
GAGACTCGCCACCTGAGCTTCATGTCTACTTTGTTTACATGTGCGTTGAT
GTATACATACAGTACCACCGCCTCCAGAGCCTCCTTCTCCACATTTTTTT
CGTCCTGATGACGGCGGCGGTCACGACTGCGTGTGTCCAGTCTTTACTAT
TTTCCCACCCTTCGCTCGATCCTAGGCAATTCCATAGGCTGGCCCCGTCG
AGGAATGCATAAATATTCATTGACAACGTCCCTCTCTTCCAAAATCATCT
TTTCCTCACATGACCATAGCCAACACATCTGCACAGAATAAGTAGGCCTC
GATTGAAAGGCGCGCTTGTGAAAAAGTCGCACAATTTCCGGGAGCCCAGC
AGCCTCAGGCCAGCAACTACGACAGTCCTGCACCTTCAGTCCATCAGCCC
CACCACGCTCCCTATGGCTTCTTACGCAGACGGTACGTTCATCCATGCAT
GGAGGATCTGAACCAGCTGCCCGCGATGCGTGATTGCGGTTTATGCATGC
GTGCCACCCCCTGACCACCCCACCCCCGGGTCCTCAGTTACTTTCTTTCC
CATCTGAACCTCACACCAGCCCCCTCTCTGCACGTGTAACCATCCTTTCT
CTTGCACGCGCAAAAAACAAGAAAATTAGAAGGCGGATTGACATGTCCCG
CTATCACTTACGTCTAGCCATCACTCATGTTCCCTCCCCCCCTCTCTGCC
TCCGTCTGTCGGTCCCTCCCACGCCTCAACTGTCAGAAGACACGGTCGAA
CGCACTCTTTGCCAAATTCGGACCGTGCACGGCTTCAAGATCCCTCCCCG
TCTTAGTGCTGGGGGCTACCGAGCCTCCGACTGGAAGGAGGAAGTGTGGC
AAGGCGCCTTAAAGGTTGTGCAAAAGGGGTTGGACGCCGCCATCTTGCTG
ATTGACCCCAAAAATGGTAAGGCTCAGGATTACGCGGCTTCCCCCCTTCT
TTGGTTTCTGTTGTTTCTTGATTCTTGGACTCTGCTCTGTGGTTGGAACA
GTGTCCCTCTATTTCCTCTCGCCACCTCATTCCTCTCTCCCCCTTCTCAT
CTTTGGCCGCTTTTCCTTGCTGGGGTCGAGCCTTGAGACTAGAAAGTGAA
AAGTGGTGAAAGTCATCCTCCCTCCCTCTCTCCCTTTTTTTGCCCTCCCT
CCTATGTACAGGCTCACTCTTCGCCATGTGCCCCATCAAGGAAGGATCTG
TCGAACGCTGCGTCGACTCCAGCCGGTATTTTGTCTTGAAAATTCAAAAT
GCCTCGGGTCGACATGCCTTCGTGGGTGTGGCTTTCAATGAACGCGAGGA
GGCCTTTGACTTCAATGTGGCCATGCAGGAGTACGAGAAAGACAAAGCGC
GGACTGAGAGGTTGAGGACGAGGGGAAAGGAGAGTGAGGAGGAGGACGGG
AGGGAGGGAGGAGGGCCCAAGGTGGATTTGAGTCTGAAGGAAGGCGAAAA
GCTGACGATCAGGTTGCCCACCCGCGAGGGAGGGGTTGGGGCCACGACGG
GAGGGGAGAGGAAGAAGAGGGTGACAGGTGGTGGTGGGGGTATAACCAGT
GGGGGAGGTTTGTTGCCTCCACCGCCGGGGTCGTCGTGGGGAGGCTTGCT
TGCCCCCCCTGCCTCCGTCTCGTCAGCACCAGCGGTGAGGAGGGCACAAA
CGGGCGCGGCAGCTCATGATGACTTTCTGGCTGGGTCTGGCACTAGAGTG
ACCGCAACGACGGGATGGAAAGATGGTGATGCTGTTGCTTCCCCCCCCCC
TTTTGCCCCCCTTGGCTCCTCGTTTGCTTCTTCCTCCTCTTCCTCCTCCT
CGGCGACAAGCAAGGACGACTTTGGCGGCTTCATGGCCCCTGTCAAGTCC
TCCCTCTCCCTCACCCCCACATTTTCTGCTTTTTCCAGCACCGGCTCTGA
CTCCGTGGACGTTGGCGGTGCTGCTCCTTGCTCCAAGAGTGCCACTGGCC
CGGAGTCTGCGAAACCCTCTCCCTTCGACAGCCTGAGTGCCCTCGGTGCA
GGCCTGCCGGGCATGACCAGCGGCAACAGCAACAGCAGCAAGAGCAGTGA
TCCTTTCGCGGACTTGCTGCCGTTCAGGTGAGTTGTCGGCGGCAGGAAAG
TGGAGGAAAAGAGGGAGGGATGGAGGGCAGGGAGGGCAGGGAAGGTTGAA
GCGAGGGAGGGGAGGGGAGGTTGTGATGTGTTGATGGTAGAGCGCCGTTG
CATAAATTTGATAGAGGAGATAGAAGGAAGCAAACGGGATAAACATAGTA
TATTACTGAGTCCAGACTAGAGACGGCAGCAACAGTAGGACGTAGCAGAG
CAACACGAGACAAAGCACCTTTGATTATCGACAGGAAGAGAATAGAGAGC
ACGGACAGACTTGCTTACATACATACAACAAAATTTATGCATCGAAAATT
ATGTTTGCTCATATACAACCAACCAGCCGTCACGGAGGGGTAAGAGACGA
TGGAACGAGGAGGAAGCGGAGGACGGACAGACAGAAGAAAGGTGAAGAGT
GGAAAGGTAGGATGTGTGTGGAGGCACCCTGACTGTACTTTCATGGCTTA
TTTACGTGTGAGATGATAGACGTGTTAGATAACAACATGGAATACGATAT
TAAACATTTAGAGAAGAGCAGAGCTTTGCCCCAGAGAAAATCCGTACACA
AACGAAATAACAAGAGAACATAAC back to topCoding sequence (CDS) from alignment at scaffold_14:635796..638719- >mRNA_6149 ID=mRNA_6149|Name=jgi.p|Nanoce1779_2|557050|organism=Nannochloropsis oceanica|type=CDS|length=3357bp|location=Sequence derived from alignment at scaffold_14:635796..638719- (Nannochloropsis oceanica)
GCTCACTCTTCGCCATGTGCCCCATCAAGGAAGGATCTGTCGAACGCTGC
GTCGACTCCAGCCGGTATTTTGTCTTGAAAATTCAAAATGCCTCGGGTCG
ACATGCCTTCGTGGGTGTGGCTTTCAATGAACGCGAGGAGGCCTTTGACT
TCAATGTGGCCATGCAGGAGTACGAGAAAGACAAAGCGCGGACTGAGAGG
TTGAGGACGAGGGGAAAGGAGAGTGAGGAGGAGGACGGGAGGGAGGGAGG
AGGGCCCAAGGTGGATTTGAGTCTGAAGGAAGGCGAAAAGCTGACGATCA
GGTTGCCCACCCGCGAGGGAGGGGTTGGGGCCACGACGGGAGGGGAGAGG
AAGAAGAGGGTGACAGGTGGTGGTGGGGGTATAACCAGTGGGGGAGGTTT
GTTGCCTCCACCGCCGGGGTCGTCGTGGGGAGGCTTGCTTGCCCCCCCTG
CCTCCGTCTCGTCAGCACCAGCGGTGAGGAGGGCACAAACGGGCGCGGCA
GCTCATGATGACTTTCTGGCTGGGTCTGGCACTAGAGTGACCGCAACGAC
GGGATGGAAAGATGGTGATGCTGTTGCTTCCCCCCCCCCTTTTGCCCCCC
TTGGCTCCTCGTTTGCTTCTTCCTCCTCTTCCTCCTCCTCGGCGACAAGC
AAGGACGACTTTGGCGGCTTCATGGCCCCTGTCAAGTCCTCCCTCTCCCT
CACCCCCACATTTTCTGCTTTTTCCAGCACCGGCTCTGACTCCGTGGACG
TTGGCGGTGCTGCTCCTTGCTCCAAGAGTGCCACTGGCCCGGAGTCTGCG
AAACCCTCTCCCTTCGACAGCCTGAGTGCCCTCGGTGCAGGCCTGCCGGG
CATGACCAGCGGCAACAGCAACAGCAGCAAGAGCAGTGATCCTTTCGCGG
ACTTGCTGCCGTTCAGGTGAAAGACACGGTCGAACGCACTCTTTGCCAAA
TTCGGACCGTGCACGGCTTCAAGATCCCTCCCCGTCTTAGTGCTGGGGGC
TACCGAGCCTCCGACTGGAAGGAGGAAGTGTGGCAAGGCGCCTTAAAGGT
TGTGCAAAAGGGGTTGGACGCCGCCATCTTGCTGATTGACCCCAAAAATG
ATGGCTTCTTACGCAGACGGCTCACTCTTCGCCATGTGCCCCATCAAGGA
AGGATCTGTCGAACGCTGCGTCGACTCCAGCCGGTATTTTGTCTTGAAAA
TTCAAAATGCCTCGGGTCGACATGCCTTCGTGGGTGTGGCTTTCAATGAA
CGCGAGGAGGCCTTTGACTTCAATGTGGCCATGCAGGAGTACGAGAAAGA
CAAAGCGCGGACTGAGAGGTTGAGGACGAGGGGAAAGGAGAGTGAGGAGG
AGGACGGGAGGGAGGGAGGAGGGCCCAAGGTGGATTTGAGTCTGAAGGAA
GGCGAAAAGCTGACGATCAGGTTGCCCACCCGCGAGGGAGGGGTTGGGGC
CACGACGGGAGGGGAGAGGAAGAAGAGGGTGACAGGTGGTGGTGGGGGTA
TAACCAGTGGGGGAGGTTTGTTGCCTCCACCGCCGGGGTCGTCGTGGGGA
GGCTTGCTTGCCCCCCCTGCCTCCGTCTCGTCAGCACCAGCGGTGAGGAG
GGCACAAACGGGCGCGGCAGCTCATGATGACTTTCTGGCTGGGTCTGGCA
CTAGAGTGACCGCAACGACGGGATGGAAAGATGGTGATGCTGTTGCTTCC
CCCCCCCCTTTTGCCCCCCTTGGCTCCTCGTTTGCTTCTTCCTCCTCTTC
CTCCTCCTCGGCGACAAGCAAGGACGACTTTGGCGGCTTCATGGCCCCTG
TCAAGTCCTCCCTCTCCCTCACCCCCACATTTTCTGCTTTTTCCAGCACC
GGCTCTGACTCCGTGGACGTTGGCGGTGCTGCTCCTTGCTCCAAGAGTGC
CACTGGCCCGGAGTCTGCGAAACCCTCTCCCTTCGACAGCCTGAGTGCCC
TCGGTGCAGGCCTGCCGGGCATGACCAGCGGCAACAGCAACAGCAGCAAG
AGCAGTGATCCTTTCGCGGACTTGCTGCCGTTCAGGTGAAAGACACGGTC
GAACGCACTCTTTGCCAAATTCGGACCGTGCACGGCTTCAAGATCCCTCC
CCGTCTTAGTGCTGGGGGCTACCGAGCCTCCGACTGGAAGGAGGAAGTGT
GGCAAGGCGCCTTAAAGGTTGTGCAAAAGGGGTTGGACGCCGCCATCTTG
CTGATTGACCCCAAAAATGATGGCTTCTTACGCAGACGGCTCACTCTTCG
CCATGTGCCCCATCAAGGAAGGATCTGTCGAACGCTGCGTCGACTCCAGC
CGGTATTTTGTCTTGAAAATTCAAAATGCCTCGGGTCGACATGCCTTCGT
GGGTGTGGCTTTCAATGAACGCGAGGAGGCCTTTGACTTCAATGTGGCCA
TGCAGGAGTACGAGAAAGACAAAGCGCGGACTGAGAGGTTGAGGACGAGG
GGAAAGGAGAGTGAGGAGGAGGACGGGAGGGAGGGAGGAGGGCCCAAGGT
GGATTTGAGTCTGAAGGAAGGCGAAAAGCTGACGATCAGGTTGCCCACCC
GCGAGGGAGGGGTTGGGGCCACGACGGGAGGGGAGAGGAAGAAGAGGGTG
ACAGGTGGTGGTGGGGGTATAACCAGTGGGGGAGGTTTGTTGCCTCCACC
GCCGGGGTCGTCGTGGGGAGGCTTGCTTGCCCCCCCTGCCTCCGTCTCGT
CAGCACCAGCGGTGAGGAGGGCACAAACGGGCGCGGCAGCTCATGATGAC
TTTCTGGCTGGGTCTGGCACTAGAGTGACCGCAACGACGGGATGGAAAGA
TGGTGATGCTGTTGCTTCCCCCCCCCCTTTTGCCCCCCTTGGCTCCTCGT
TTGCTTCTTCCTCCTCTTCCTCCTCCTCGGCGACAAGCAAGGACGACTTT
GGCGGCTTCATGGCCCCTGTCAAGTCCTCCCTCTCCCTCACCCCCACATT
TTCTGCTTTTTCCAGCACCGGCTCTGACTCCGTGGACGTTGGCGGTGCTG
CTCCTTGCTCCAAGAGTGCCACTGGCCCGGAGTCTGCGAAACCCTCTCCC
TTCGACAGCCTGAGTGCCCTCGGTGCAGGCCTGCCGGGCATGACCAGCGG
CAACAGCAACAGCAGCAAGAGCAGTGATCCTTTCGCGGACTTGCTGCCGT
TCAGGTGAAAGACACGGTCGAACGCACTCTTTGCCAAATTCGGACCGTGC
ACGGCTTCAAGATCCCTCCCCGTCTTAGTGCTGGGGGCTACCGAGCCTCC
GACTGGAAGGAGGAAGTGTGGCAAGGCGCCTTAAAGGTTGTGCAAAAGGG
GTTGGACGCCGCCATCTTGCTGATTGACCCCAAAAATGATGGCTTCTTAC
GCAGACG back to top
|