jgi.p|Nanoce1779_2|593916, mRNA_6148 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593916
Unique Name	mRNA_6148
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2040
Alignment location	scaffold_14:633740..635779 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594002
Track	FilteredModels2
ProteinId	593916

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:633740..635779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593916	gene_6148	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593916	mRNA_6148-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6148	CDS_6148	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:633740..635779+
coding sequence from alignment at scaffold_14:633740..635779+

mRNA sequence

>mRNA_6148 ID=mRNA_6148|Name=jgi.p|Nanoce1779_2|593916|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
AGGACAAACGAATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTC
CTGCTTGCCGTAGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAA
TACTGGAATCACAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCG
CTGCCAATACCACCACTACGACGGACAATTCCGCCACCGATACTGCATCT
CTCAACAGTATTCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCG
AATTGGTTATGGAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCG
GGTCCCTCCGTCAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCC
GCCAATTACGGTAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAA
AACGCTCATCGAGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGA
GTAAAGCGGGGTACATTCAAGGACAAAACATGGAACGATACCAAGATGGC
ACCGTCAAGACCCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTG
CATCCACCCGGCCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCC
TCAACCTGCCCTCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTAT
CTCACGCACAACATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCT
GGAGGACCATCGAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGG
CCATGGAAGCAGAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGG
ATCTCGTCCAATTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAA
GTACGACCACCTGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCT
CTCAGGTTGAAGGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAG
CATCATTTCAGTACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGG
GCTGGATCATGCCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGA
TCAACCGTCCTTTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCT
GAATACGAAGATACCCGTCCTGCCTATGAGGAAGCACGTGATGTTCTCCT
TGCTTATCTCGACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCG
TTATCTTTCGCCCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAA
GCGGGAGAAGGTAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCA
GTCAATTGTTCCTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCG
AAGGGACGTTTGACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGAC
GCGTGTAAGCGGTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGT
GGTGGAGGGGGAATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGC
AGGAATTCGCCGTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTG
TTGCTTGGGTGTAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAA
TGCGATGTTTCCATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATAT
AGACAGTCCTTCTTTGATGGGATGACGAACGTGCTGATGTGGGTGTGTAA
TCGCGCATTAGAGATGAAGACGGTGTTCCTTCCCTGGGAGGCAGCGAGTC
CGTGAGTGGCTACAAAATCAAGCACACAGTTGGAGTCTAAAGTCGGAAAT
CCATAGATATATTTCTTGGACAGAGAAAAAGAGTGTGTAAAAACGGTAAG
CTAAACAAAGTATACTTAAAATTAGGTGGCCAGTAAAAAGCAAATTGAAA
AAAGGGGCGAGAAGGGAGAGATGAGAGGGAAAAGGAAGTGAGAGAATAGG
AGTCTAGACGGCAGGAAGGAATGGCTGAGAGAAGATAAAGATAATTGTGC
CGCGCGAAGAGACAAAAAAAAATCGGGAAAGATAGGGGGG

protein sequence of jgi.p|Nanoce1779_2|593916

>mRNA_6148-protein ID=mRNA_6148-protein|Name=jgi.p|Nanoce1779_2|593916|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MPLPYFPTLPLLLLLAVVAISGFVLPGMPNTGITSSSSNTNVCTTAAANT
TTTTDNSATDTASLNSIPGSDVGMILPISRIGYGTYRIGHNSEEQAGSLR
QALLQGINLIDTSANYGNGEAEEVVGEVMKTLIEEGAIQRQDVVIVSKAG
YIQGQNMERYQDGTVKTPDTVEVASYLAHCIHPAFLQDQLNRSLDRLNLP
SLDVFLLHNPEYYLTHNIPAGRRDISDAALEDHRAEMDRRLFEAFKAMEA
EIASGQGRIESYGISSNSFSLPPTHPHFLKYDHLVEMAQRAAKAVASQVE
GEEEVEGEERAPKHHFSTIQLPGNLLEQEGLDHAADWAAQNGLMVLINRP
LNAFNDRMSLRLAEYEDTRPAYEEARDVLLAYLDAVAEDKGADNFRVIFR
PEIEEIDTYLQKQAGEGKINVLSWENLSSQSIVPALRRGLQATANAEGTF
DTQAMRLAQDFLDACKRFVSFHSGTHAREVVEGELGFGRLPEGKSLQEFA
VEWLLAREGVTCVLLGCRNMRYVTDAVKVNAMFPSVTSFARGLIKI*

mRNA from alignment at scaffold_14:633740..635779+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6148 ID=mRNA_6148|Name=jgi.p|Nanoce1779_2|593916|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp|location=Sequence derived from alignment at scaffold_14:633740..635779+ (Nannochloropsis oceanica)
AGGACAAACGAATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTC
CTGCTTGCCGTAGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAA
TACTGGAATCACAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCG
CTGCCAATACCACCACTACGACGGACAATTCCGCCACCGATACTGCATCT
CTCAACAGTATTCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCG
AATTGGTTATGGAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCG
GGTCCCTCCGTCAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCC
GCCAATTACGGTAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAA
AACGCTCATCGAGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGA
GTAAAGCGGGGTACATTCAAGGACAAAACATGGAACGATACCAAGATGGC
ACCGTCAAGACCCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTG
CATCCACCCGGCCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCC
TCAACCTGCCCTCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTAT
CTCACGCACAACATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCT
GGAGGACCATCGAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGG
CCATGGAAGCAGAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGG
ATCTCGTCCAATTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAA
GTACGACCACCTGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCT
CTCAGGTTGAAGGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAG
CATCATTTCAGTACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGG
GCTGGATCATGCCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGA
TCAACCGTCCTTTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCT
GAATACGAAGATACCCGTCCTGCCTATGAGGAAGCACGTGATGTTCTCCT
TGCTTATCTCGACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCG
TTATCTTTCGCCCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAA
GCGGGAGAAGGTAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCA
GTCAATTGTTCCTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCG
AAGGGACGTTTGACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGAC
GCGTGTAAGCGGTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGT
GGTGGAGGGGGAATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGC
AGGAATTCGCCGTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTG
TTGCTTGGGTGTAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAA
TGCGATGTTTCCATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATAT
AGACAGTCCTTCTTTGATGGGATGACGAACGTGCTGATGTGGGTGTGTAA
TCGCGCATTAGAGATGAAGACGGTGTTCCTTCCCTGGGAGGCAGCGAGTC
CGTGAGTGGCTACAAAATCAAGCACACAGTTGGAGTCTAAAGTCGGAAAT
CCATAGATATATTTCTTGGACAGAGAAAAAGAGTGTGTAAAAACGGTAAG
CTAAACAAAGTATACTTAAAATTAGGTGGCCAGTAAAAAGCAAATTGAAA
AAAGGGGCGAGAAGGGAGAGATGAGAGGGAAAAGGAAGTGAGAGAATAGG
AGTCTAGACGGCAGGAAGGAATGGCTGAGAGAAGATAAAGATAATTGTGC
CGCGCGAAGAGACAAAAAAAAATCGGGAAAGATAGGGGGG

Coding sequence (CDS) from alignment at scaffold_14:633740..635779+

>mRNA_6148 ID=mRNA_6148|Name=jgi.p|Nanoce1779_2|593916|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at scaffold_14:633740..635779+ (Nannochloropsis oceanica)
ATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTCCTGCTTGCCGT
AGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAATACTGGAATCA
CAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCGCTGCCAATACC
ACCACTACGACGGACAATTCCGCCACCGATACTGCATCTCTCAACAGTAT
TCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCGAATTGGTTATG
GAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCGGGTCCCTCCGT
CAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCCGCCAATTACGG
TAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAAAACGCTCATCG
AGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGAGTAAAGCGGGG
TACATTCAAGGACAAAACATGGAACGATACCAAGATGGCACCGTCAAGAC
CCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTGCATCCACCCGG
CCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCCTCAACCTGCCC
TCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTATCTCACGCACAA
CATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCTGGAGGACCATC
GAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGGCCATGGAAGCA
GAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGGATCTCGTCCAA
TTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAAGTACGACCACC
TGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCTCTCAGGTTGAA
GGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAGCATCATTTCAG
TACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGGGCTGGATCATG
CCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGATCAACCGTCCT
TTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCTGAATACGAAGA
TACCCGTCCTGCCTATGAGGAAGCACGTGATGTTCTCCTTGCTTATCTCG
ACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCGTTATCTTTCGC
CCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAAGCGGGAGAAGG
TAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCAGTCAATTGTTC
CTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCGAAGGGACGTTT
GACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGACGCGTGTAAGCG
GTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGTGGTGGAGGGGG
AATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGCAGGAATTCGCC
GTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTGTTGCTTGGGTG
TAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAATGCGATGTTTC
CATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATATAG

Synonyms

Publications