jgi.p|Nanoce1779_2|625794, mRNA_6147 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625794
Unique Name	mRNA_6147
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1928
Alignment location	scaffold_14:630648..633570 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625880
Track	FilteredModels2
ProteinId	625794

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:630648..633570 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625794	gene_6147	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625794	mRNA_6147-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6147	CDS_6147	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:630648..633570+
coding sequence from alignment at scaffold_14:630648..633570+

mRNA sequence

>mRNA_6147 ID=mRNA_6147|Name=jgi.p|Nanoce1779_2|625794|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
CCCCCCCCTTTCCTTCTATCGTCGTCGCCAGATGACTTTCGGGGCCCCCT
GGCGCGAATTCCCCCGAGCTAATAGCTGCTGTCCATGCAGGAGGCACCTC
CAGCCCCACTCCTTCCTGTCCTCCCTCTTTCCCACCATTCGCTTGTCGTC
GTTGTTGTTGTTGCTGCTGCTGCTGATGGTGAGGACGTGTAGCCAGGAGG
ATGGCGAACGTCACGTCATGGGGGACGGGTGCTAGCTCAGCGACTTCCTG
GGAGGGAGGGAGAAAGGGAGATAGGAGTGGAGAAGATGAGCCCAGAAATA
ATGTACACGCCACTCCGTAAAAAGAGGGCCACTTACCTCGGCGATGCTGA
TGCGGGCTAGCACCTTCCGAAACGCCGGAAAGGGGTCTTCCAGACTGCCT
TCCGCCAAGGCTTGAATGAGTAAGGGGGAAGAGAGCAGCTCAAAGGCGAA
AGACTCCAGGGGGGTTTGGGGGGCGTCATTGTTGCTGTGTGATTTTGTGT
GTGAGCGTGTGTGCCTGTGTATGTGCGTGTCTGTGTCGGATCCTACGGAC
CCTCTTCTAGCGCTGTCGTTGTACACCTTCCTCCTACCTCCCTACCTGCT
CCCATACAGCGTCAAGACAATCTTATCGATCGATCCCTCCATCAACATGC
CTCCCGCAGCTTGCATCACCTCGTGTATGTACAGATTTAGGTCCGGGTGA
CGACTCATGAAAACGGGCACGTCATATTTCCGCCGGCGTTCAAAGACGGC
GGAGGGGTAGACGCCGCGGTTGTACCTGCGGAAGGAGGAAGCAAGGGTAG
AAAGAGGGAGGGGGAAATGGAAAGGAGTCTCTTCTCCTCCTCTAGCGGAT
ACGGCGGTGGCGCTGGGGCCCGAGACACGTTCAAGCCAATCAAGGAGCAC
ACCAGTGGAAAGCGCATCTCGCTCCACCGCTACTCCCAAGCCACCCTCGC
AACCGGCATCACCCGAGCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGG
ACGAATGGCTGGCCGTGCACACGGTGGATGCCTACAACGAGCTGGCATTG
CTATATGGGATTATGCATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGC
GGTTATGAATGCAGGACCCGAGTACGAGTATCTGTGGGCGGACAAGAATC
TGCACAAGAGACCAACCAAGGTCTCGGCGAATGAGTATGTGGGCTTACTT
TTGGAGTGGGTGGAAGAGCAGTTGAATGATCCAGCCGTCTTTCCTGCAAC
GACGGATGTGGCCTTCCCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTT
TCACGCGAATGTTTCGAGTGTATGCCCACATTTATTTGACCCACGTTACA
GACATGGAACGTGCAGGGGCCATGAGCCATCTGAACTCGTGTTTCAAGCA
CTTTATTTTTTGTGCGCTTGAGTATGACTTGGTGGCGGAACGGGAGCTGG
CGCCTCTGCAACGGCAGCAGCAGCAGTAGCTTGAGACCAGGCAAGGGCGG
ACCGTTGTCGTCAACGCCGATGCCAACACCACGGAAGGAGAGGGCTTCCT
TTCCTTCTTCCTTCTTTTCATTGTCCTCTTCGTCCTCCTCTCCTTCCTCC
TTGTCCTCGTCATCTTCCTCCAAAGCTTGAAGACCACAGCACAGAAACAA
TACCAGCAGTAGCAGCGGCTACAGACCTCGCAAGGGCAGTGGCAGCAACA
AGCTCAACATTATGATGGCACGAGAATTCTATCCAAGAAGTTCCAGGGCG
GGACCATAAAAGACGGCTGAAAACTTCTTGCGATTCATTCAAATATGCGC
CACGGCCTTTACCAGGAAGCTTAACAAAGCATGATATGGCAAAATGGGAA
TGGGAAAAATCCTTTATTTGTACATATTCGAACAATAAATTAACGGACAA
AGAAAGAAAGCGTTCATTGTGAGGAGAT

protein sequence of jgi.p|Nanoce1779_2|625794

>mRNA_6147-protein ID=mRNA_6147-protein|Name=jgi.p|Nanoce1779_2|625794|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MERSLFSSSSGYGGGAGARDTFKPIKEHTSGKRISLHRYSQATLATGITR
AAVACPASEDPDEWLAVHTVDAYNELALLYGIMHGKCLASNESCAVMNAG
PEYEYLWADKNLHKRPTKVSANEYVGLLLEWVEEQLNDPAVFPATTDVAF
PRTFRASVAKIFTRMFRVYAHIYLTHVTDMERAGAMSHLNSCFKHFIFCA
LEYDLVAERELAPLQRQQQQ*

mRNA from alignment at scaffold_14:630648..633570+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6147 ID=mRNA_6147|Name=jgi.p|Nanoce1779_2|625794|organism=Nannochloropsis oceanica|type=mRNA|length=2923bp|location=Sequence derived from alignment at scaffold_14:630648..633570+ (Nannochloropsis oceanica)
CCCCCCCCTTTCCTTCTATCGTCGTCGCCAGATGACTTTCGGGGCCCCCT
GGCGCGAATTCCCCCGAGCTAATAGCTGCTGTCCATGCAGGAGGCACCTC
CAGCCCCACTCCTTCCTGTCCTCCCTCTTTCCCACCATTCGCTTGTCGTC
GTTGTTGTTGTTGCTGCTGCTGCTGATGGTGAGGACGTGTAGCCAGGAGG
ATGGCGAACGTCACGTCATGGGGGACGGGTGCTAGCTCAGCGACTTCCTG
GGAGGGAGGGAGAAAGGGAGATAGGAGTGGAGAAGATGAGCCCAGAAATA
ATGTACACGCCACTCCGTAAAAAGAGGGCCACTTACCTCGGCGATGCTGA
TGCGGGCTAGCACCTTCCGAAACGCCGGAAAGGGGTCTTCCAGACTGCCT
TCCGCCAAGGCTTGAATGAGTAAGGGGGAAGAGAGCAGCTCAAAGGCGAA
AGACTCCAGGGGGGTTTGGGGGGCGTCATTGTTGCTGTGTGATTTTGTGT
GTGAGCGTGTGTGCCTGTGTATGTGCGTGTCTGTGTCGGATCCTACGGAC
CCTCTTCTAGCGCTGTCGTTGTACACCTTCCTCCTACCTCCCTACCTGCT
CCCATACAGCGTCAAGACAATCTTATCGATCGATCCCTCCATCAACATGC
CTCCCGCAGCTTGCATCACCTCGTGTATGTACAGATTTAGGTCCGGGTGA
CGACTCATGAAAACGGGCACGTCATATTTCCGCCGGCGTTCAAAGACGGC
GGAGGGGTAGACGCCGCGGTTGTACCTGCGGAAGGAGGAAGCAAGGGTAG
AAAGAGGGAGGGGGAAATGGAAAGGAGGTGAAATGCAATGTTATGGAGGG
CTGAGGGTAAGAGAGAACTGCTCGGCATTGAAACCTTCTCTTATGTTTAT
TCAATCGGAAATGAAGATAAGCAAGCAGTGGTAGACGTGGAATCGAAAAG
TCAAGGACAAACTTACAAGACTTGGTGGACGGCTACCTCCAGGAACTCTA
GTAGCACCGCCGTCGCCTCCTGCAAGGGATCGTCTTGCTTCATGGTCGCC
GTGCTGTGTTGCATGTGTGTGTAATTGGGGATTACGAGAAAGGGATGAGA
ATGGGAGGGAGGCGAAGGTGGCGGAGGTGGGTGACATGTTGGCGCAAAAA
ACGAAGCAGTTTCACACGAGCAGACTGCCCTCTTGCTTCGCCTTGGTCAT
GTCTCAGCCTGTCTGTGGCGTGTACGTCACTCTGTGCCCCATCAACCGCA
ACCGCACTCACTGAAGAGACATGCATCACTTAAAGGGACACTCCTTGCGG
TCGTGCGTCCTGCTGTTGTTCCCCTGGCCCATTTATTTAATTTATTCATT
TGATCATTCCCTATCAAATCAGAGGCTACGCACACAGTTATGTGGCCATC
GGGTAAGTTTGGAGGAAGCAACAAGCCTCCATCGTCCCTTTTGTCGTCCC
CTGTCTCTTGTGCCAACAGCAGGACCATGAGCTTCGATAGCAGCATTGAT
AGCAGCACCAGCACGAGCACCAGCAGTGGCAGCAGTAGCAACAACTCGAG
CCTCTCTTCCTCCTCTTCCTCCACCTCGTCGTCGTCCCGCGGGCTCCTTC
AGTCCTTATCCTTTCTTCCCAGTCTCTTCTCCTCCTCTAGCGGATACGGC
GGTGGCGCTGGGGCCCGAGACACGTTCAAGCCAATCAAGGAGCACACCAG
TGGAAAGCGCATCTCGCTCCACCGCTACTCCCAAGCCACCCTCGCAACCG
GCATCACCCGAGCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGGACGAA
TGGCTGGCCGTGCACACGGTGGATGCCTACAACGAGCTGGCATTGCTATA
TGGGATTATGCATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGCGGTTA
TGAATGCAGGACCCGAGTACGAGTATCTGTGGGCGGACAAGAATCTGCAC
AAGAGACCAACCAAGGTCTCGGCGAATGAGTATGTGGGCTTACTTTTGGA
GTGGGTGGAAGAGCAGTTGAATGATCCAGCCGTCTTTCCTGCAACGACGG
ATGTGGCCTTCCCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTTTCACG
CGAATGTTTCGAGTGTATGCCCACATTTATTTGACCCACGTTACAGACAT
GGAACGTGCAGGGGCCATGAGCCATCTGAACTCGTGTTTCAAGCACTTTA
TTTTTTGTGCGCTTGAGTATGACTTGGTGGCGGAACGGGAGCTGGCGCCT
CTGCAAGTATTGATCCGTTCCATACTAATAGAAGACGCTCGAAGGCATGC
AGCAGAGCACAAATCCTTCCCTTCTCCTTCATCTTTTGGCGCGTTAACTC
GCACATCCTTGGTGGCTGCTTCGGCGACGCATTCGCGGCATCAGGCAAGG
CTGCAGCGCTCGGGGAGTAATAGTGTGAATGCCAGCAGCCGCAGCCTCAG
CAGCAGCGGCAGCAGCAGCAGTAGCTTGAGACCAGGCAAGGGCGGACCGT
TGTCGTCAACGCCGATGCCAACACCACGGAAGGAGAGGGCTTCCTTTCCT
TCTTCCTTCTTTTCATTGTCCTCTTCGTCCTCCTCTCCTTCCTCCTTGTC
CTCGTCATCTTCCTCCAAAGCTTGAAGACCACAGCACAGAAACAATACCA
GCAGTAGCAGCGGCTACAGACCTCGCAAGGGCAGTGGCAGCAACAAGCTC
AACATTATGATGGCACGAGAATTCTATCCAAGAAGTTCCAGGGCGGGACC
ATAAAAGACGGCTGAAAACTTCTTGCGATTCATTCAAATATGCGCCACGG
CCTTTACCAGGAAGCTTAACAAAGCATGATATGGCAAAATGGGAATGGGA
AAAATCCTTTATTTGTACATATTCGAACAATAAATTAACGGACAAAGAAA
GAAAGCGTTCATTGTGAGGAGAT

Coding sequence (CDS) from alignment at scaffold_14:630648..633570+

>mRNA_6147 ID=mRNA_6147|Name=jgi.p|Nanoce1779_2|625794|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_14:630648..633570+ (Nannochloropsis oceanica)
ATGGAAAGGAGTCTCTTCTCCTCCTCTAGCGGATACGGCGGTGGCGCTGG
GGCCCGAGACACGTTCAAGCCAATCAAGGAGCACACCAGTGGAAAGCGCA
TCTCGCTCCACCGCTACTCCCAAGCCACCCTCGCAACCGGCATCACCCGA
GCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGGACGAATGGCTGGCCGT
GCACACGGTGGATGCCTACAACGAGCTGGCATTGCTATATGGGATTATGC
ATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGCGGTTATGAATGCAGGA
CCCGAGTACGAGTATCTGTGGGCGGACAAGAATCTGCACAAGAGACCAAC
CAAGGTCTCGGCGAATGAGTATGTGGGCTTACTTTTGGAGTGGGTGGAAG
AGCAGTTGAATGATCCAGCCGTCTTTCCTGCAACGACGGATGTGGCCTTC
CCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTTTCACGCGAATGTTTCG
AGTGTATGCCCACATTTATTTGACCCACGTTACAGACATGGAACGTGCAG
GGGCCATGAGCCATCTGAACTCGTGTTTCAAGCACTTTATTTTTTGTGCG
CTTGAGTATGACTTGGTGGCGGAACGGGAGCTGGCGCCTCTGCAACGGCA
GCAGCAGCAGTAGATGGAAAGGAGTCTCTTCTCCTCCTCTAGCGGATACG
GCGGTGGCGCTGGGGCCCGAGACACGTTCAAGCCAATCAAGGAGCACACC
AGTGGAAAGCGCATCTCGCTCCACCGCTACTCCCAAGCCACCCTCGCAAC
CGGCATCACCCGAGCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGGACG
AATGGCTGGCCGTGCACACGGTGGATGCCTACAACGAGCTGGCATTGCTA
TATGGGATTATGCATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGCGGT
TATGAATGCAGGACCCGAGTACGAGTATCTGTGGGCGGACAAGAATCTGC
ACAAGAGACCAACCAAGGTCTCGGCGAATGAGTATGTGGGCTTACTTTTG
GAGTGGGTGGAAGAGCAGTTGAATGATCCAGCCGTCTTTCCTGCAACGAC
GGATGTGGCCTTCCCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTTTCA
CGCGAATGTTTCGAGTGTATGCCCACATTTATTTGACCCACGTTACAGAC
ATGGAACGTGCAGGGGCCATGAGCCATCTGAACTCGTGTTTCAAGCACTT
TATTTTTTGTGCGCTTGAGTATGACTTGGTGGCGGAACGGGAGCTGGCGC
CTCTGCAACGGCAGCAGCAGCAGTAGATGGAAAGGAGTCTCTTCTCCTCC
TCTAGCGGATACGGCGGTGGCGCTGGGGCCCGAGACACGTTCAAGCCAAT
CAAGGAGCACACCAGTGGAAAGCGCATCTCGCTCCACCGCTACTCCCAAG
CCACCCTCGCAACCGGCATCACCCGAGCCGCCGTCGCCTGCCCCGCCTCC
GAAGACCCGGACGAATGGCTGGCCGTGCACACGGTGGATGCCTACAACGA
GCTGGCATTGCTATATGGGATTATGCATGGAAAATGCCTGGCGAGCAACG
AGAGCTGCGCGGTTATGAATGCAGGACCCGAGTACGAGTATCTGTGGGCG
GACAAGAATCTGCACAAGAGACCAACCAAGGTCTCGGCGAATGAGTATGT
GGGCTTACTTTTGGAGTGGGTGGAAGAGCAGTTGAATGATCCAGCCGTCT
TTCCTGCAACGACGGATGTGGCCTTCCCGAGGACGTTCAGAGCGTCCGTG
GCTAAGATTTTCACGCGAATGTTTCGAGTGTATGCCCACATTTATTTGAC
CCACGTTACAGACATGGAACGTGCAGGGGCCATGAGCCATCTGAACTCGT
GTTTCAAGCACTTTATTTTTTGTGCGCTTGAGTATGACTTGGTGGCGGAA
CGGGAGCTGGCGCCTCTGCAACGGCAGCAGCAGCAGTAG

Synonyms

Publications