jgi.p|Nanoce1779_2|623555, mRNA_6141 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623555
Unique Name	mRNA_6141
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2091
Alignment location	scaffold_14:613810..615954 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623641
Track	FilteredModels2
ProteinId	623555

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:613810..615954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623555	gene_6141	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623555	mRNA_6141-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6141	CDS_6141	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:613810..615954+
coding sequence from alignment at scaffold_14:613810..615954+

mRNA sequence

>mRNA_6141 ID=mRNA_6141|Name=jgi.p|Nanoce1779_2|623555|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp
ATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACGTGGCG
GGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGCGGCCC
TGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAGAGGCC
GTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGATCACCG
CCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCTCAATA
AATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCGAATCT
GCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTATGGTT
AAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGTGGTGA
TGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCTCGGCA
CCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGGTGCGG
CATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACCCTTCG
CCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCGATTCG
GCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGCGGCTT
CCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAACGGGA
ACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTTTCGGG
CAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTACAGGC
AGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAACAAAC
GCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCAGCAGC
AGCCATGACAGGGAAGCAGGCGCTGTAACGGCCGTGGAGCCTTACGGTTT
TATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCTGGCCC
GGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCTCCTCC
CGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCCGCCAC
GGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGAGACTG
ACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGGCCAAC
TTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACAGCTTT
CTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAATCAGC
GCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGTTCTAC
AACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCGGCGCT
GACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCATGAGCT
TCATTAAGAAAAAAGACTTCGCCTTCAAAGTCGGAAAGGCCAACTTCGTA
CCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAGGGCCA
CTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGTGATCC
TCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCCCCCTC
CTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCGGACCT
GGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCAGGTGA
TTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGGAGGGC
ATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGCTGGCA
CCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCGTCCGC
GGGAGGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGGGCGCGCTTG
CTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGCCGAGGAGGC
GTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAGGCGGGGGCG
AGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAA

protein sequence of jgi.p|Nanoce1779_2|623555

>mRNA_6141-protein ID=mRNA_6141-protein|Name=jgi.p|Nanoce1779_2|623555|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MRKFSHVWKAPESTTWRGIYRWEDEEHEGWKAALTQFPYKVPSFATKAEA
VEFIKAHCRVGSNRDHRLYQHIFTLLTSWEQLNKYLVVKITHYDRLLGES
ATMAASPSLDPTGNVWLRGPPAEDPDLNVGGVVMALDQRLSLPFHQVLSA
PSTINTLKYLFEHMRCGIFVKIKAGQLVMFVPFANDAYANTWAGEMEFDS
ADGTLETYFQEKMKGGFRKENILPNVAEWWANGNMIDNEKVKAGTDKRFG
QVWGDFFFCQLKEMLQAVCQERAVPDCEFFINKRDYPHLKTHHDTNSSSS
SHDREAGAVTAVEPYGFIFGKDDRDPAQDVPLARHAYSSYAPVASFYISS
RFADIPWPTTEDWEAATGRVYPHTFMHRFDAETDELVVENEPRDLFTEAN
FQKFSQVEWRDKVPTAFFRGTATGGGTKVETNQRLKLAHLSHLWSKDGFY
NGQENEDFSVPYLDAALTGWNMRDKKIASEPMSFIKKKDFAFKVGKANFV
PIYEQARFKYLIYVEGHCAACRYSFLMRLGSVILKVESRCVADEMWYFPL
LRPFVDHVPVKADMSDLDEQIQWCREHDAKCQVIAANARRIYDAYCSKEG
ILDYLQLITHKIAARWHRVPSWWQPSPLGCPRPREDRERISQAAEARARL
LEERKARAVQRREAEEASRKRVRREAEEAAGGGEDEEDDEYDGNLA*

mRNA from alignment at scaffold_14:613810..615954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6141 ID=mRNA_6141|Name=jgi.p|Nanoce1779_2|623555|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at scaffold_14:613810..615954+ (Nannochloropsis oceanica)
ATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACGTGGCG
GGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGCGGCCC
TGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAGAGGCC
GTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGATCACCG
CCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCTCAATA
AATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCGAATCT
GCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTATGGTT
AAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGTGGTGA
TGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCTCGGCA
CCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGGTGCGG
CATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACCCTTCG
CCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCGATTCG
GCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGCGGCTT
CCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAACGGGA
ACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTTTCGGG
CAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTACAGGC
AGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAACAAAC
GCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCAGCAGC
AGCCATGACAGGGAAGCAGGCGCTGTAACGGCCGTGGAGCCTTACGGTTT
TATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCTGGCCC
GGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCTCCTCC
CGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCCGCCAC
GGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGAGACTG
ACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGGCCAAC
TTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACAGCTTT
CTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAATCAGC
GCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGTTCTAC
AACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCGGCGCT
GACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCATGAGCT
TCATTAAGAAAAAAGACTTCGCCTTCAAAGTCGGAAAGGCCAACTTCGTA
CCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAGGGCCA
CTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGTGATCC
TCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCCCCCTC
CTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCGGACCT
GGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCAGGTGA
TTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGGAGGGC
ATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGCTGGCA
CCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCGTCCGC
GGGAGGGTGGGGGTGGGGGGGCAGGAGGAGGCCGCTGCAGCTGCCGGCGG
TGCAACGAAGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGGGCGCG
CTTGCTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGCCGAGG
AGGCGTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAGGCGGG
GGCGAGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAA

Coding sequence (CDS) from alignment at scaffold_14:613810..615954+

>mRNA_6141 ID=mRNA_6141|Name=jgi.p|Nanoce1779_2|623555|organism=Nannochloropsis oceanica|type=CDS|length=4182bp|location=Sequence derived from alignment at scaffold_14:613810..615954+ (Nannochloropsis oceanica)
ATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACGTGGCG
GGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGCGGCCC
TGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAGAGGCC
GTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGATCACCG
CCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCTCAATA
AATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCGAATCT
GCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTATGGTT
AAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGTGGTGA
TGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCTCGGCA
CCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGGTGCGG
CATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACCCTTCG
CCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCGATTCG
GCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGCGGCTT
CCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAACGGGA
ACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTTTCGGG
CAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTACAGGC
AGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAACAAAC
GCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCAGCAGC
AGCCATGACAGGGAAGCAGGCGCTGTAACGGCCGTGGAGCCTTACGGTTT
TATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCTGGCCC
GGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCTCCTCC
CGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCCGCCAC
GGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGAGACTG
ACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGGCCAAC
TTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACAGCTTT
CTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAATCAGC
GCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGTTCTAC
AACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCGGCGCT
GACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCATGAGCT
TCATTAAGAAAAAAGACTTCGCCTTCAAAGTCGGAAAGGCCAACTTCGTA
CCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAGGGCCA
CTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGTGATCC
TCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCCCCCTC
CTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCGGACCT
GGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCAGGTGA
TTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGGAGGGC
ATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGCTGGCA
CCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCGTCCGC
GGGAGGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGGGCGCGCTTG
CTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGCCGAGGAGGC
GTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAGGCGGGGGCG
AGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAAATGCGCAAG
TTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACGTGGCGGGGAATTTA
CCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGCGGCCCTGACCCAAT
TCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAGAGGCCGTAGAGTTC
ATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGATCACCGCCTGTATCA
GCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCTCAATAAATACTTAG
TGGTCAAGATCACGCATTACGACCGCCTCCTGGGCGAATCTGCTACCATG
GCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTATGGTTAAGAGGTCC
GCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGTGGTGATGGCGCTGG
ACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCTCGGCACCGTCCACG
ATCAACACTCTCAAGTACCTGTTCGAGCACATGCGGTGCGGCATCTTCGT
CAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACCCTTCGCCAACGACG
CCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCGATTCGGCGGACGGC
ACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGCGGCTTCCGCAAGGA
GAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAACGGGAACATGATCG
ACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTTTCGGGCAGGTCTGG
GGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTACAGGCAGTCTGTCA
GGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAACAAACGCGACTACC
CTCACCTCAAGACGCACCATGACACCAACAGCAGCAGCAGCAGCCATGAC
AGGGAAGCAGGCGCTGTAACGGCCGTGGAGCCTTACGGTTTTATCTTCGG
AAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCTGGCCCGGCACGCCT
ATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCTCCTCCCGCTTCGCC
GACATTCCCTGGCCCACCACCGAGGACTGGGAGGCCGCCACGGGCCGCGT
GTACCCCCACACCTTCATGCACCGCTTCGACGCCGAGACTGACGAGCTTG
TGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGGCCAACTTCCAGAAG
TTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACAGCTTTCTTCCGGGG
CACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAATCAGCGCCTAAAAC
TCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGTTCTACAACGGGCAA
GAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCGGCGCTGACAGGCTG
GAACATGCGCGACAAAAAGATTGCCAGCGAGCCCATGAGCTTCATTAAGA
AAAAAGACTTCGCCTTCAAAGTCGGAAAGGCCAACTTCGTACCCATCTAC
GAACAGGCGCGCTTTAAATACCTGATCTACGTGGAGGGCCACTGCGCTGC
TTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGTGATCCTCAAAGTTG
AGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCCCCCTCCTCAGGCCC
TTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCGGACCTGGACGAGCA
GATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCAGGTGATTGCAGCCA
ACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGGAGGGCATTTTGGAC
TACCTGCAGCTCATCACCCACAAGATTGCTGCGCGCTGGCACCGTGTGCC
TTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCGTCCGCGGGAGGACC
GCGAACGGATCAGCCAGGCTGCGGAGGCCAGGGCGCGCTTGCTGGAAGAA
CGCAAGGCACGTGCCGTCCAACGCCGGGAAGCCGAGGAGGCGTCTCGCAA
ACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAGGCGGGGGCGAGGATGAGG
AAGACGACGAATACGATGGAAATTTGGCATAA

Synonyms

Publications