jgi.p|Nanoce1779_2|593881, mRNA_6140 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593881
Unique Name	mRNA_6140
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1711
Alignment location	scaffold_14:611796..613506 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593967
Track	FilteredModels2
ProteinId	593881

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:611796..613506 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593881	gene_6140	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593881	mRNA_6140-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6140	CDS_6140	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:611796..613506-
coding sequence from alignment at scaffold_14:611796..613506-

mRNA sequence

>mRNA_6140 ID=mRNA_6140|Name=jgi.p|Nanoce1779_2|593881|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
AACTACAGGAGCAGGTAGGACCTTGGCATTAAACTACTTGGACTAGATAG
AGGCCAACGACGGCTCGACGAGCACAGACTCGGTAATATTGAGTGCATGG
AGGAGCCAATACATCGGCCGCCTGTGGAGGTGGCGCACGACAGCCCCAGC
GAGGTCTTGCGGGACCTTAGGCAATGGTTTATGGAGCACGACGGATCGCT
CCATCAGGTGGATGTAGCCATTATCGACGAGGCAGAAGGTTGTGGCCTTG
TGGCGTTGGCACCCGTGGAAGCCGGGCAACTTGTTCTACAGGTGCCCATG
CCCCTTTGTCTGCACGTCGAGGCAGTGCATCTCTCCGTGCTGCGCGACGT
GGTGGCTGCGGAGCCGCAATTGCTAGAAAAAGATTCACAGGACGAATTAC
TGGCACTCATGCTCATGGCGGAACGAAGGGCCGGTCGGCACTCTTACTGG
TGGCCTTATCTCAAGGTGATGCCGAGGGAATACGAGACGCCTTTGTATTG
GGGAGAGGAAGAACGCCGTTACTTGGTTGGCACTAATGTGGGCTTGTTGA
CGGCTATTATGGAACATCAAATTGGGCAAGATTGGAAGGAAATTCACGAG
AAGTTGGTCGAGAGGTACCCTGGCGTGTTGGGCGGGCTCACCCTGCAAGA
CTACAGCTGGGCCTTGTCCACTATTTGGAGTCGCGCCGTGGGCGTGGAAC
GGGGAGAAGGCCATCGGTATCTGCGTTGTTTGGCGCCGGTTTTGGACATG
TGCAATCATCATCCTTCCGCCGCTCGGGATCTGGGGGAGTTGCTCCAATA
TGAGTCTGAGACCGACTCCTTGTGCTTTCGGCCGGCCACACCCGTGACAC
GGGGCCAGCAATGTCATCTCTTGTATGGCCCCTATAGCAACGCCAAGCTC
CTGTATAGCTACGGGTTTGTAGCCGCCCAAAACCCGCGTCGTGGCGTGGA
TTACTGGGTCAAGGTCCCACCGACCGCACCCGATGCGGCTTGGAAGACAG
AGCAATTGCTGGCGCACGATCTGACGCGAGAACAGACGTATAACTTTGAT
GGGACTCTCTTGGGAAATAGCGTGACCATCGCCCTAATGGCGACGGTGCG
CATGGTCCACCTCAGCCCCGACGAGTACAAATATGTCGAAAAGGTCTTTC
GGGGAGAAATGGTAAGCCTGCGCAACGAGCGAGACTCCTTCACGGGCCTC
GCTGCTTTTCTGGAGAAGAAGGTCTCGAGTTACCCGACTGCTGTGGAAGA
GGATTTGCGGTCGCTGGAAAAGCTTGAGCGTGTCCTTGAAGCAGCGCAAG
GAGAAGAGCCGGAGGGAGAAATGGGGTTGAGAATAGGGCTTTGGACTGAA
GGAGGAACCCACCAGGACGGGACCAGTGAGGCTGTGACGAACAACAGAGA
GGAAGGGGAGGGGCCCCGACAACAGAAGGCTAATCTTCGACGGGCGTTGC
GCCGTCGGGCGTGTGCGCTTAAGGTGGTGCTGGAAGATAAGCTGGTATTC
CAAGAAACGCTTTCCTCCGTAAGGCATCGCCTGAGAGAGTTGAATGCTGA
CGAGGCCGCCCTCGTGGCAGGACTGGATTAGTTTATTCGTAGTAGATGGA
GGCCAACTCAGCGAATTAAGAAATTAGCGAATTAAAAAAAGCAGGATATG
CTGATAGGATAAATTGATATGAGATAGATAAAATAGCAACGAACAGAAAT
GATGAAATCGA

protein sequence of jgi.p|Nanoce1779_2|593881

>mRNA_6140-protein ID=mRNA_6140-protein|Name=jgi.p|Nanoce1779_2|593881|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MEEPIHRPPVEVAHDSPSEVLRDLRQWFMEHDGSLHQVDVAIIDEAEGCG
LVALAPVEAGQLVLQVPMPLCLHVEAVHLSVLRDVVAAEPQLLEKDSQDE
LLALMLMAERRAGRHSYWWPYLKVMPREYETPLYWGEEERRYLVGTNVGL
LTAIMEHQIGQDWKEIHEKLVERYPGVLGGLTLQDYSWALSTIWSRAVGV
ERGEGHRYLRCLAPVLDMCNHHPSAARDLGELLQYESETDSLCFRPATPV
TRGQQCHLLYGPYSNAKLLYSYGFVAAQNPRRGVDYWVKVPPTAPDAAWK
TEQLLAHDLTREQTYNFDGTLLGNSVTIALMATVRMVHLSPDEYKYVEKV
FRGEMVSLRNERDSFTGLAAFLEKKVSSYPTAVEEDLRSLEKLERVLEAA
QGEEPEGEMGLRIGLWTEGGTHQDGTSEAVTNNREEGEGPRQQKANLRRA
LRRRACALKVVLEDKLVFQETLSSVRHRLRELNADEAALVAGLD*

mRNA from alignment at scaffold_14:611796..613506-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6140 ID=mRNA_6140|Name=jgi.p|Nanoce1779_2|593881|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at scaffold_14:611796..613506- (Nannochloropsis oceanica)
AACTACAGGAGCAGGTAGGACCTTGGCATTAAACTACTTGGACTAGATAG
AGGCCAACGACGGCTCGACGAGCACAGACTCGGTAATATTGAGTGCATGG
AGGAGCCAATACATCGGCCGCCTGTGGAGGTGGCGCACGACAGCCCCAGC
GAGGTCTTGCGGGACCTTAGGCAATGGTTTATGGAGCACGACGGATCGCT
CCATCAGGTGGATGTAGCCATTATCGACGAGGCAGAAGGTTGTGGCCTTG
TGGCGTTGGCACCCGTGGAAGCCGGGCAACTTGTTCTACAGGTGCCCATG
CCCCTTTGTCTGCACGTCGAGGCAGTGCATCTCTCCGTGCTGCGCGACGT
GGTGGCTGCGGAGCCGCAATTGCTAGAAAAAGATTCACAGGACGAATTAC
TGGCACTCATGCTCATGGCGGAACGAAGGGCCGGTCGGCACTCTTACTGG
TGGCCTTATCTCAAGGTGATGCCGAGGGAATACGAGACGCCTTTGTATTG
GGGAGAGGAAGAACGCCGTTACTTGGTTGGCACTAATGTGGGCTTGTTGA
CGGCTATTATGGAACATCAAATTGGGCAAGATTGGAAGGAAATTCACGAG
AAGTTGGTCGAGAGGTACCCTGGCGTGTTGGGCGGGCTCACCCTGCAAGA
CTACAGCTGGGCCTTGTCCACTATTTGGAGTCGCGCCGTGGGCGTGGAAC
GGGGAGAAGGCCATCGGTATCTGCGTTGTTTGGCGCCGGTTTTGGACATG
TGCAATCATCATCCTTCCGCCGCTCGGGATCTGGGGGAGTTGCTCCAATA
TGAGTCTGAGACCGACTCCTTGTGCTTTCGGCCGGCCACACCCGTGACAC
GGGGCCAGCAATGTCATCTCTTGTATGGCCCCTATAGCAACGCCAAGCTC
CTGTATAGCTACGGGTTTGTAGCCGCCCAAAACCCGCGTCGTGGCGTGGA
TTACTGGGTCAAGGTCCCACCGACCGCACCCGATGCGGCTTGGAAGACAG
AGCAATTGCTGGCGCACGATCTGACGCGAGAACAGACGTATAACTTTGAT
GGGACTCTCTTGGGAAATAGCGTGACCATCGCCCTAATGGCGACGGTGCG
CATGGTCCACCTCAGCCCCGACGAGTACAAATATGTCGAAAAGGTCTTTC
GGGGAGAAATGGTAAGCCTGCGCAACGAGCGAGACTCCTTCACGGGCCTC
GCTGCTTTTCTGGAGAAGAAGGTCTCGAGTTACCCGACTGCTGTGGAAGA
GGATTTGCGGTCGCTGGAAAAGCTTGAGCGTGTCCTTGAAGCAGCGCAAG
GAGAAGAGCCGGAGGGAGAAATGGGGTTGAGAATAGGGCTTTGGACTGAA
GGAGGAACCCACCAGGACGGGACCAGTGAGGCTGTGACGAACAACAGAGA
GGAAGGGGAGGGGCCCCGACAACAGAAGGCTAATCTTCGACGGGCGTTGC
GCCGTCGGGCGTGTGCGCTTAAGGTGGTGCTGGAAGATAAGCTGGTATTC
CAAGAAACGCTTTCCTCCGTAAGGCATCGCCTGAGAGAGTTGAATGCTGA
CGAGGCCGCCCTCGTGGCAGGACTGGATTAGTTTATTCGTAGTAGATGGA
GGCCAACTCAGCGAATTAAGAAATTAGCGAATTAAAAAAAGCAGGATATG
CTGATAGGATAAATTGATATGAGATAGATAAAATAGCAACGAACAGAAAT
GATGAAATCGA

Coding sequence (CDS) from alignment at scaffold_14:611796..613506-

>mRNA_6140 ID=mRNA_6140|Name=jgi.p|Nanoce1779_2|593881|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_14:611796..613506- (Nannochloropsis oceanica)
ATGGAGGAGCCAATACATCGGCCGCCTGTGGAGGTGGCGCACGACAGCCC
CAGCGAGGTCTTGCGGGACCTTAGGCAATGGTTTATGGAGCACGACGGAT
CGCTCCATCAGGTGGATGTAGCCATTATCGACGAGGCAGAAGGTTGTGGC
CTTGTGGCGTTGGCACCCGTGGAAGCCGGGCAACTTGTTCTACAGGTGCC
CATGCCCCTTTGTCTGCACGTCGAGGCAGTGCATCTCTCCGTGCTGCGCG
ACGTGGTGGCTGCGGAGCCGCAATTGCTAGAAAAAGATTCACAGGACGAA
TTACTGGCACTCATGCTCATGGCGGAACGAAGGGCCGGTCGGCACTCTTA
CTGGTGGCCTTATCTCAAGGTGATGCCGAGGGAATACGAGACGCCTTTGT
ATTGGGGAGAGGAAGAACGCCGTTACTTGGTTGGCACTAATGTGGGCTTG
TTGACGGCTATTATGGAACATCAAATTGGGCAAGATTGGAAGGAAATTCA
CGAGAAGTTGGTCGAGAGGTACCCTGGCGTGTTGGGCGGGCTCACCCTGC
AAGACTACAGCTGGGCCTTGTCCACTATTTGGAGTCGCGCCGTGGGCGTG
GAACGGGGAGAAGGCCATCGGTATCTGCGTTGTTTGGCGCCGGTTTTGGA
CATGTGCAATCATCATCCTTCCGCCGCTCGGGATCTGGGGGAGTTGCTCC
AATATGAGTCTGAGACCGACTCCTTGTGCTTTCGGCCGGCCACACCCGTG
ACACGGGGCCAGCAATGTCATCTCTTGTATGGCCCCTATAGCAACGCCAA
GCTCCTGTATAGCTACGGGTTTGTAGCCGCCCAAAACCCGCGTCGTGGCG
TGGATTACTGGGTCAAGGTCCCACCGACCGCACCCGATGCGGCTTGGAAG
ACAGAGCAATTGCTGGCGCACGATCTGACGCGAGAACAGACGTATAACTT
TGATGGGACTCTCTTGGGAAATAGCGTGACCATCGCCCTAATGGCGACGG
TGCGCATGGTCCACCTCAGCCCCGACGAGTACAAATATGTCGAAAAGGTC
TTTCGGGGAGAAATGGTAAGCCTGCGCAACGAGCGAGACTCCTTCACGGG
CCTCGCTGCTTTTCTGGAGAAGAAGGTCTCGAGTTACCCGACTGCTGTGG
AAGAGGATTTGCGGTCGCTGGAAAAGCTTGAGCGTGTCCTTGAAGCAGCG
CAAGGAGAAGAGCCGGAGGGAGAAATGGGGTTGAGAATAGGGCTTTGGAC
TGAAGGAGGAACCCACCAGGACGGGACCAGTGAGGCTGTGACGAACAACA
GAGAGGAAGGGGAGGGGCCCCGACAACAGAAGGCTAATCTTCGACGGGCG
TTGCGCCGTCGGGCGTGTGCGCTTAAGGTGGTGCTGGAAGATAAGCTGGT
ATTCCAAGAAACGCTTTCCTCCGTAAGGCATCGCCTGAGAGAGTTGAATG
CTGACGAGGCCGCCCTCGTGGCAGGACTGGATTAG

Synonyms

Publications