jgi.p|Nanoce1779_2|593877, mRNA_6138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593877
Unique NamemRNA_6138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1209
Alignment locationscaffold_14:603188..604396 -

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Properties
Property NameValue
TranscriptId593963
TrackFilteredModels2
ProteinId593877
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:603188..604396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593877gene_6138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593877mRNA_6138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6138CDS_6138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Nanoce1779_2|593877|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ACAGCTCATACATACCATACATACCCTTGGGCGTCGTGCGGGTGGAGATT
TGACTTAAAAGAAGAAGTGCGCGCTAACCTCCCGACCTCCCGCCATGACG
ACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAGTACTTTTTCAA
CCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCACATACCGCTTTC
CAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCTCCACAGACCAT
GACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTTTTGGCTTGGTT
TGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGCCATCGAGCTGG
GAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGCGTTTTGCCTCG
GACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAGACACTCAAACG
CAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGAAAAGAGGGGAC
AGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCGCGCTCAAGGGT
ACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGAGTGGAGGCAAG
CTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTATCGTAGATGATG
GATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGTGTTGGATAGAT
TTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTTTTGCACGCGCG
AGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAATCGCGCAAACG
CGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGGGCATGCTTGTC
ACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAGAAGGACTGGCC
CACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTTAGCAATTTCAT
TAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCATGGACAATAGC
GGGATGATCGGACGGGCTACGCCTTGTTGATTTCCATGTCAAGGAAATAC
ATAGATCATAATTTGTAGGCGGATGTAAAGAACTGTATGTTGAGGAAAAG
AAAGAAAGAAGAGAGATCGGAAGGGATTAACCCCCCATAAAAAAGGGATG
GCATGGGAAAAAAACAAAAAAAAATGGATAAAGTTTAGTAAAAGAAAAAG
ACAACCAGC
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protein sequence of jgi.p|Nanoce1779_2|593877

>mRNA_6138-protein ID=mRNA_6138-protein|Name=jgi.p|Nanoce1779_2|593877|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTTSLLHSSLEDEDEYFFNPELFMNKTLAPVTYRFPGLEQTVWASSASST
DHDQTGEIIWPISVFLAWFVVSQGERFRDHQAIELGAGCAGLPGLIASRF
ASDVLLTDGNDSVLETLKRNVAEMIEQEKIEEKRGQSSTSISRSGDSTAL
KGTTSSNGSRGSFKRVEASSLVWGDGKSAQAIVDDGWRPQILLGADIVCW
IDFVIPLLQTVKFFFLHAREPLQAVLYLGFVNRANATERLLFTQANAMGM
LVTRIPAESFLPLDKKDWPTELRDTTQKLELLAISLDRTVDGFDRTVCMD
NSGMIGRATPC*
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mRNA from alignment at scaffold_14:603188..604396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Nanoce1779_2|593877|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at scaffold_14:603188..604396- (Nannochloropsis oceanica)
ACAGCTCATACATACCATACATACCCTTGGGCGTCGTGCGGGTGGAGATT
TGACTTAAAAGAAGAAGTGCGCGCTAACCTCCCGACCTCCCGCCATGACG
ACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAGTACTTTTTCAA
CCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCACATACCGCTTTC
CAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCTCCACAGACCAT
GACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTTTTGGCTTGGTT
TGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGCCATCGAGCTGG
GAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGCGTTTTGCCTCG
GACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAGACACTCAAACG
CAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGAAAAGAGGGGAC
AGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCGCGCTCAAGGGT
ACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGAGTGGAGGCAAG
CTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTATCGTAGATGATG
GATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGTGTTGGATAGAT
TTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTTTTGCACGCGCG
AGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAATCGCGCAAACG
CGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGGGCATGCTTGTC
ACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAGAAGGACTGGCC
CACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTTAGCAATTTCAT
TAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCATGGACAATAGC
GGGATGATCGGACGGGCTACGCCTTGTTGATTTCCATGTCAAGGAAATAC
ATAGATCATAATTTGTAGGCGGATGTAAAGAACTGTATGTTGAGGAAAAG
AAAGAAAGAAGAGAGATCGGAAGGGATTAACCCCCCATAAAAAAGGGATG
GCATGGGAAAAAAACAAAAAAAAATGGATAAAGTTTAGTAAAAGAAAAAG
ACAACCAGC
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Coding sequence (CDS) from alignment at scaffold_14:603188..604396-

>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Nanoce1779_2|593877|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_14:603188..604396- (Nannochloropsis oceanica)
ATGACGACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAGTACTT
TTTCAACCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCACATACC
GCTTTCCAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCTCCACA
GACCATGACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTTTTGGC
TTGGTTTGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGCCATCG
AGCTGGGAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGCGTTTT
GCCTCGGACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAGACACT
CAAACGCAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGAAAAGA
GGGGACAGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCGCGCTC
AAGGGTACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGAGTGGA
GGCAAGCTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTATCGTAG
ATGATGGATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGTGTTGG
ATAGATTTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTTTTGCA
CGCGCGAGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAATCGCG
CAAACGCGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGGGCATG
CTTGTCACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAGAAGGA
CTGGCCCACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTTAGCAA
TTTCATTAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCATGGAC
AATAGCGGGATGATCGGACGGGCTACGCCTTGTTGA
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Synonyms
Publications