jgi.p|Nanoce1779_2|631348, mRNA_6137 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631348
Unique Name	mRNA_6137
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2251
Alignment location	scaffold_14:599758..602397 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631434
Track	FilteredModels2
ProteinId	631348

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:599758..602397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631348	gene_6137	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631348	mRNA_6137-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6137	CDS_6137	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:599758..602397-
coding sequence from alignment at scaffold_14:599758..602397-

mRNA sequence

>mRNA_6137 ID=mRNA_6137|Name=jgi.p|Nanoce1779_2|631348|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp
ACAGGATTACACACGAGGGGAAGCCTTCCTACAATAAATTGTTACATATT
CTTCGCTTAATTTTTGCCGAGTTTAGAATGGCTTTGACAGGTTTTTGATA
GTAGTGCGGGCCATTCTTGGCCGTTGGCTGGCCATGAGGGGTGATTTCGC
TGCTTCGTTCGCTTTTGCCCACGTACGCATTCATCGCTCTACGTGTGCGT
AAAACACCAACGCCTGACGAAATCCCTCCATCGACACGCCTAAGCCACAG
ATAATTTGCCTGAGGCAGCAGGCACTCTCCATGCGTATTCGTCCCTTGCG
GCCCAGCAGCTTTTTGTATCAGTATCCCTCCCGTCGTCTCGCCGCGCAAA
GCCTTCTACTGTCTGTCCTCTTACCAGCCGTTCTCATGACACCGCACGGA
GAAGCCTTTGTTCAGCCATCCGCTCGCCACGGGGGGCGGGGCCAGCCCAA
GCAATCACACAACCGCCACCCCCATCCTCAGCAGCACCAGCAGCATCGTC
AGCAGCACAACCAGGCAGCCATGCCTCCAGCCCCAGCCACGAGCGCCTCC
AACCATTTGACAGATGCATTGTTCCGTGACCTGCCCTTGTCAGCCGGGAC
CCAGCGGGCGCTCGCCGAGACGATGGGATTTGACCGCATGACCCAGGTCC
AAGAAGCCACGCTGCCCTTGATTCTGGCGGGCAATGACGTGATGGCCAAG
GCCAAGACAGGCACCGGTAAGACACTGGCTTTTTGCATACCAGCCTTGGA
ACAGCTCCGGCAAACACCCCCGCGCCCGGGCAGCATTTCAGTGCTTGTTC
TTTCGCCTACGCGGGAGCTGGCCCAGCAGATCCATGTAGAGGCGTCCAAG
CTCCTGACATTCCAAAACAAGCTCAAAGCCGACCTCAGCTACGGTGGCAC
AAACGTCAACTCGGAGCGCAATCGCCTCTTGAGCCGGCGCCCGGATATTT
TGGTAGCAACACCGGGTCGGTTGATGGACCACTTGGAGAACAACGGTTTA
GCGCCGCATTTCCAGGACCTGCGCATCCTCATCTTGGACGAGGCGGACCA
GCTGCTGGATATGGGTTTTCGCCCTGCCATAGAGAAGATAATCGGTTTCC
TACCTTCCCACGCCCGACAGACCCTTCTTTTCAGCGCCACGATGCCGAAA
GGTGTCAAGGAAGTCGCCGGCCTAGCCATGCGCCCCAACTACAAATTTAT
CGATACCGTGGAGAAGGAGGAGGCTGACACGAACATTCAGGTGACGCAGT
CGTCGGCTGTGTTGCCCTTGGACCAGCACTTCGCGTTCTTGCACACCCTG
CTGACCAAAGCCAAGCAAGATCCTGCCCACAAGATTATTGTTTTCTTTAC
GACGGCGCGCTTGGTGGGGTACTACTGCGAGCTGATGGGCAAAGCTGGCA
TCCAGGCCATGGAGATCCACTCCCGAAAATCGCAAGCCGCCCGCACAAAA
ACCTCGGACCAATTCCGCGTCGCCAAGTCTGGCATCCTCTTCTCCTCTGA
CGTCAGTGCCCGTGGTGTGGACTACGATGGCATCACGCTTGTGGTGCAGA
TGGGCGTGCCCAGCAACCGCGAGATGTACATCCACCGCCTGGGCCGCACG
GGCCGAGCGGGCAAGGACGGGGAGGGGCTCATCGTGCTCACTCCGGAGGA
GGCCTTCTTTCTCCGTGAACTCAAGGATCTTCCAATCGTCACCATCTCCG
CCGAGGCCTGTCAGCCCGACCAGGCCAGCGTAGCTGCCATCCAACGCGCC
AAGGGGGCCGTGGACGAGCGGGCGGTCGGTGCGGCCTACCAGGCGTGGTT
GGGCTTCTACAACTCCGTGCCCGGCCTGAAGTGGAGCAAGGCGCGCTTGG
TAGAAGAAGCGAATACGTTTGCTGCCATCATGGGCTGCGACCAGCCTCCG
GCGTTGTTGAAGAAGACAGTAGGTATGATGGGCTTGCGCGGCGTGCCTGG
ACTCAGGGTCGAGGCGAGCATTCCCGGCTATGCGGATGATTTAATGTTCT
GGGAGCTTAGAGTGTGCGTATCGGACGACGAAGAAACCAAGAGCTCTTTG
TAATGTCCGCAACATCCGAGGTAACGAATGACAAGACAGACGTGAAAGAA
CGAGCATAACAACATCCGCATAGAAGATTTGAAGACGAAGACTGCTGGAT
GACTTAAGAAACCTGTCTCCTACGCAAAGGTAAAGCAAACGAAAAAAGCT
TGTCCCACACTAACCGAAAGCAAAAGAAACAAGAAGATGCGTGAACAGCC
C

protein sequence of jgi.p|Nanoce1779_2|631348

>mRNA_6137-protein ID=mRNA_6137-protein|Name=jgi.p|Nanoce1779_2|631348|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MRIRPLRPSSFLYQYPSRRLAAQSLLLSVLLPAVLMTPHGEAFVQPSARH
GGRGQPKQSHNRHPHPQQHQQHRQQHNQAAMPPAPATSASNHLTDALFRD
LPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLA
FCIPALEQLRQTPPRPGSISVLVLSPTRELAQQIHVEASKLLTFQNKLKA
DLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRIL
ILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAM
RPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLTKAKQDPAH
KIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKS
GILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGL
IVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVG
AAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTVGMM
GLRGVPGLRVEASIPGYADDLMFWELRVCVSDDEETKSSL*

mRNA from alignment at scaffold_14:599758..602397-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6137 ID=mRNA_6137|Name=jgi.p|Nanoce1779_2|631348|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp|location=Sequence derived from alignment at scaffold_14:599758..602397- (Nannochloropsis oceanica)
ACAGGATTACACACGAGGGGAAGCCTTCCTACAATAAATTGTTACATATT
CTTCGCTTAATTTTTGCCGAGTTTAGAATGGCTTTGACAGGTTTTTGATA
GTAGTGCGGGCCATTCTTGGCCGTTGGCTGGCCATGAGGGGTGATTTCGC
TGCTTCGTTCGCTTTTGCCCACGTACGCATTCATCGCTCTACGTGTGCGT
AAAACACCAACGCCTGACGAAATCCCTCCATCGACACGCCTAAGCCACAG
ATAATTTGCCTGAGGCAGCAGGCACTCTCCATGCGTATTCGTCCCTTGCG
GCCCAGCAGCTTTTTGTATCAGTATCCCTCCCGTCGTCTCGCCGCGCAAA
GCCTTCTACTGTCTGTCCTCTTACCAGCCGTTCTCATGACACCGCACGGA
GAAGCCTTTGTTCAGCCATCCGCTCGCCACGGGGGGCGGGGCCAGCCCAA
GCAATCACACAACCGCCACCCCCATCCTCAGCAGCACCAGCAGCATCGTC
AGCAGCACAACCAGGCAGCCATGCCTCCAGCCCCAGCCACGAGCGCCTCC
AACCATTTGACAGATGCATTGTTCCGTGACCTGCCCTTGTCAGCCGGGAC
CCAGCGGGCGCTCGCCGAGACGATGGGATTTGACCGCATGACCCAGGTCC
AAGAAGCCACGCTGCCCTTGATTCTGGCGGGCAATGACGTGATGGCCAAG
GCCAAGACAGGCACCGGTAAGACACTGGCTTTTTGCATACCAGCCTTGGA
ACAGCTCCGGCAAACACCCCCGCGCCCGGGCAGCATTTCAGTGCTTGTTC
TTTCGCCTACGCGGGAGCTGGCCCAGCAGATCCATGTAGAGGCGTCCAAG
CTCCTGACATTCCAAAACAAGCTCAAAGCCGACCTCAGCTACGGTGGCAC
AAACGTCAACTCGGAGCGCAATCGCCTCTTGAGCCGGCGCCCGGATATTT
TGGTAGCAACACCGGGTCGGTTGATGGACCACTTGGAGAACAACGGTTTA
GCGCCGCATTTCCAGGACCTGCGCATCCTCATCTTGGACGAGGCGGACCA
GCTGCTGGATATGGGTTTTCGCCCTGCCATAGAGAAGATAATCGGTTTCC
TACCTTCCCACGCCCGACAGACCCTTCTTTTCAGCGCCACGATGCCGAAA
GGTGTCAAGGAAGTCGCCGGCCTAGCCATGCGCCCCAACTACAAATTTAT
CGATACCGTGGAGAAGGAGGAGGCTGACACGAACATTCAGGTGACGCAGT
CGTCGGCTGTGTTGCCCTTGGACCAGCACTTCGCGTTCTTGCACACCCTG
CTGACCAAAGCCAAGCAAGATCCTGCCCACAAGATTATTGTTTTCTTTAC
GACGGCGCGCTTGGTGGGGTACTACTGCGAGCTGATGGGCAAAGCTGGCA
TCCAGGCCATGGAGATCCACTCCCGAAAATCGCAAGCCGCCCGCACAAAA
ACCTCGGACCAATTCCGCGTCGCCAAGTCTGGCATCCTCTTCTCCTCTGA
CGTCAGTGCCCGTGGTGTGGACTACGATGGCATCACGCTTGTGGTGCAGA
TGGGCGTGCCCAGCAACCGCGAGATGTACATCCACCGCCTGGGCCGCACG
GGCCGAGCGGGCAAGGACGGGGAGGGGCTCATCGTGCTCACTCCGGAGGA
GGCCTTCTTTCTCCGTGAACTCAAGGATCTTCCAATCGTCACCATCTCCG
CCGAGGCCTGTCAGCCCGACCAGGCCAGCGTAGCTGCCATCCAACGCGCC
AAGGGGGCCGTGGACGAGCGGGCGGTCGGTGCGGCCTACCAGGCGTGGTT
GGGCTTCTACAACTCCGTGCCCGGCCTGAAGTGGAGCAAGGCGCGCTTGG
TAGAAGAAGCGAATACGTTTGCTGCCATCATGGGCTGCGACCAGCCTCCG
GCGTTGTTGAAGAAGACAGTAGGTATGATGGGCTTGCGCGGCGTGCCTGG
ACTCAGGGTCGAGGCGAGCATTCCCGGCGTAGGTGGAGCTGGAGGGGGAG
GACGCGGGAGAGGACGAGACGGTGGAGGAGGTGGTATTGGTGGTGGTGGC
AGCTATGCTGGAGGCGATGGTGGGATTAACCGGAAACGAACCCCGCCTGC
GTCGAATGGGGGCGGTGGGGGAGGCGGGGGGCCGAGCCAAAAAAGGCCCC
AGGGGCCTACCTCCTATGGCTTTCCCAGTGAGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGATAGTGGGCGAAGTGCGGGCGGGGGGGGGTC
GTCCTCGCCCTGCCGGAGGAGGAAGAAGAGTTGGTGGTGGTGGTGGTAGT
GGTAGTGGACGACGTGGAGGTGGTGGCGGAGGGTGGTAATTGAACATTTT
TCCCTCTCACCTTCCAGTATGCGGATGATTTAATGTTCTGGGAGCTTAGA
GTGTGCGTATCGGACGACGAAGAAACCAAGAGCTCTTTGTAATGTCCGCA
ACATCCGAGGTAACGAATGACAAGACAGACGTGAAAGAACGAGCATAACA
ACATCCGCATAGAAGATTTGAAGACGAAGACTGCTGGATGACTTAAGAAA
CCTGTCTCCTACGCAAAGGTAAAGCAAACGAAAAAAGCTTGTCCCACACT
AACCGAAAGCAAAAGAAACAAGAAGATGCGTGAACAGCCC

Coding sequence (CDS) from alignment at scaffold_14:599758..602397-

>mRNA_6137 ID=mRNA_6137|Name=jgi.p|Nanoce1779_2|631348|organism=Nannochloropsis oceanica|type=CDS|length=3546bp|location=Sequence derived from alignment at scaffold_14:599758..602397- (Nannochloropsis oceanica)
TATGCGGATGATTTAATGTTCTGGGAGCTTAGAGTGTGCGTATCGGACGA
CGAAGAAACCAAGAGCTCTTTGTAAATGCGTATTCGTCCCTTGCGGCCCA
GCAGCTTTTTGTATCAGTATCCCTCCCGTCGTCTCGCCGCGCAAAGCCTT
CTACTGTCTGTCCTCTTACCAGCCGTTCTCATGACACCGCACGGAGAAGC
CTTTGTTCAGCCATCCGCTCGCCACGGGGGGCGGGGCCAGCCCAAGCAAT
CACACAACCGCCACCCCCATCCTCAGCAGCACCAGCAGCATCGTCAGCAG
CACAACCAGGCAGCCATGCCTCCAGCCCCAGCCACGAGCGCCTCCAACCA
TTTGACAGATGCATTGTTCCGTGACCTGCCCTTGTCAGCCGGGACCCAGC
GGGCGCTCGCCGAGACGATGGGATTTGACCGCATGACCCAGGTCCAAGAA
GCCACGCTGCCCTTGATTCTGGCGGGCAATGACGTGATGGCCAAGGCCAA
GACAGGCACCGGTAAGACACTGGCTTTTTGCATACCAGCCTTGGAACAGC
TCCGGCAAACACCCCCGCGCCCGGGCAGCATTTCAGTGCTTGTTCTTTCG
CCTACGCGGGAGCTGGCCCAGCAGATCCATGTAGAGGCGTCCAAGCTCCT
GACATTCCAAAACAAGCTCAAAGCCGACCTCAGCTACGGTGGCACAAACG
TCAACTCGGAGCGCAATCGCCTCTTGAGCCGGCGCCCGGATATTTTGGTA
GCAACACCGGGTCGGTTGATGGACCACTTGGAGAACAACGGTTTAGCGCC
GCATTTCCAGGACCTGCGCATCCTCATCTTGGACGAGGCGGACCAGCTGC
TGGATATGGGTTTTCGCCCTGCCATAGAGAAGATAATCGGTTTCCTACCT
TCCCACGCCCGACAGACCCTTCTTTTCAGCGCCACGATGCCGAAAGGTGT
CAAGGAAGTCGCCGGCCTAGCCATGCGCCCCAACTACAAATTTATCGATA
CCGTGGAGAAGGAGGAGGCTGACACGAACATTCAGGTGACGCAGTCGTCG
GCTGTGTTGCCCTTGGACCAGCACTTCGCGTTCTTGCACACCCTGCTGAC
CAAAGCCAAGCAAGATCCTGCCCACAAGATTATTGTTTTCTTTACGACGG
CGCGCTTGGTGGGGTACTACTGCGAGCTGATGGGCAAAGCTGGCATCCAG
GCCATGGAGATCCACTCCCGAAAATCGCAAGCCGCCCGCACAAAAACCTC
GGACCAATTCCGCGTCGCCAAGTCTGGCATCCTCTTCTCCTCTGACGTCA
GTGCCCGTGGTGTGGACTACGATGGCATCACGCTTGTGGTGCAGATGGGC
GTGCCCAGCAACCGCGAGATGTACATCCACCGCCTGGGCCGCACGGGCCG
AGCGGGCAAGGACGGGGAGGGGCTCATCGTGCTCACTCCGGAGGAGGCCT
TCTTTCTCCGTGAACTCAAGGATCTTCCAATCGTCACCATCTCCGCCGAG
GCCTGTCAGCCCGACCAGGCCAGCGTAGCTGCCATCCAACGCGCCAAGGG
GGCCGTGGACGAGCGGGCGGTCGGTGCGGCCTACCAGGCGTGGTTGGGCT
TCTACAACTCCGTGCCCGGCCTGAAGTGGAGCAAGGCGCGCTTGGTAGAA
GAAGCGAATACGTTTGCTGCCATCATGGGCTGCGACCAGCCTCCGGCGTT
GTTGAAGAAGACAGTAGGTATGATGGGCTTGCGCGGCGTGCCTGGACTCA
GGGTCGAGGCGAGCATTCCCGGCTATGCGGATGATTTAATGTTCTGGGAG
CTTAGAGTGTGCGTATCGGACGACGAAGAAACCAAGAGCTCTTTGTAAAT
GCGTATTCGTCCCTTGCGGCCCAGCAGCTTTTTGTATCAGTATCCCTCCC
GTCGTCTCGCCGCGCAAAGCCTTCTACTGTCTGTCCTCTTACCAGCCGTT
CTCATGACACCGCACGGAGAAGCCTTTGTTCAGCCATCCGCTCGCCACGG
GGGGCGGGGCCAGCCCAAGCAATCACACAACCGCCACCCCCATCCTCAGC
AGCACCAGCAGCATCGTCAGCAGCACAACCAGGCAGCCATGCCTCCAGCC
CCAGCCACGAGCGCCTCCAACCATTTGACAGATGCATTGTTCCGTGACCT
GCCCTTGTCAGCCGGGACCCAGCGGGCGCTCGCCGAGACGATGGGATTTG
ACCGCATGACCCAGGTCCAAGAAGCCACGCTGCCCTTGATTCTGGCGGGC
AATGACGTGATGGCCAAGGCCAAGACAGGCACCGGTAAGACACTGGCTTT
TTGCATACCAGCCTTGGAACAGCTCCGGCAAACACCCCCGCGCCCGGGCA
GCATTTCAGTGCTTGTTCTTTCGCCTACGCGGGAGCTGGCCCAGCAGATC
CATGTAGAGGCGTCCAAGCTCCTGACATTCCAAAACAAGCTCAAAGCCGA
CCTCAGCTACGGTGGCACAAACGTCAACTCGGAGCGCAATCGCCTCTTGA
GCCGGCGCCCGGATATTTTGGTAGCAACACCGGGTCGGTTGATGGACCAC
TTGGAGAACAACGGTTTAGCGCCGCATTTCCAGGACCTGCGCATCCTCAT
CTTGGACGAGGCGGACCAGCTGCTGGATATGGGTTTTCGCCCTGCCATAG
AGAAGATAATCGGTTTCCTACCTTCCCACGCCCGACAGACCCTTCTTTTC
AGCGCCACGATGCCGAAAGGTGTCAAGGAAGTCGCCGGCCTAGCCATGCG
CCCCAACTACAAATTTATCGATACCGTGGAGAAGGAGGAGGCTGACACGA
ACATTCAGGTGACGCAGTCGTCGGCTGTGTTGCCCTTGGACCAGCACTTC
GCGTTCTTGCACACCCTGCTGACCAAAGCCAAGCAAGATCCTGCCCACAA
GATTATTGTTTTCTTTACGACGGCGCGCTTGGTGGGGTACTACTGCGAGC
TGATGGGCAAAGCTGGCATCCAGGCCATGGAGATCCACTCCCGAAAATCG
CAAGCCGCCCGCACAAAAACCTCGGACCAATTCCGCGTCGCCAAGTCTGG
CATCCTCTTCTCCTCTGACGTCAGTGCCCGTGGTGTGGACTACGATGGCA
TCACGCTTGTGGTGCAGATGGGCGTGCCCAGCAACCGCGAGATGTACATC
CACCGCCTGGGCCGCACGGGCCGAGCGGGCAAGGACGGGGAGGGGCTCAT
CGTGCTCACTCCGGAGGAGGCCTTCTTTCTCCGTGAACTCAAGGATCTTC
CAATCGTCACCATCTCCGCCGAGGCCTGTCAGCCCGACCAGGCCAGCGTA
GCTGCCATCCAACGCGCCAAGGGGGCCGTGGACGAGCGGGCGGTCGGTGC
GGCCTACCAGGCGTGGTTGGGCTTCTACAACTCCGTGCCCGGCCTGAAGT
GGAGCAAGGCGCGCTTGGTAGAAGAAGCGAATACGTTTGCTGCCATCATG
GGCTGCGACCAGCCTCCGGCGTTGTTGAAGAAGACAGTAGGTATGATGGG
CTTGCGCGGCGTGCCTGGACTCAGGGTCGAGGCGAGCATTCCCGGC

Synonyms

Publications