jgi.p|Nanoce1779_2|566929, mRNA_6136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566929
Unique NamemRNA_6136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length378
Alignment locationscaffold_14:599130..599507 +

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Properties
Property NameValue
TranscriptId567015
TrackFilteredModels2
ProteinId566929
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:599130..599507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566929gene_6136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566929mRNA_6136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6136CDS_6136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6136 ID=mRNA_6136|Name=jgi.p|Nanoce1779_2|566929|organism=Nannochloropsis oceanica|type=mRNA|length=378bp
ATGGGTGGCGGGGGTGGCAGTATTACGTACAGCGGTGGGCAAGCGACGTC
CGGCCAGGGAGGTTTTTATGGGGCGGGTGGGGCGCGGGCAAGCAAGGCGC
AGACAGCACACCGTCCGGAAGCTGTCGCGCACGCCGCGGACATCAAGTCA
CTGCGCATCCTCATGGAGGAAGTGGATGAGCTACAGGTGGAGTTGCGGGC
TGCTACCGAACTCCCCAAGCAGATCTCTATTAAGTCGGCTATCAAGAAGA
AGGCATCGGGGAGGGAAATGACGGAGCTTTTGAAGCGGTTAGAACTGAAG
GGGCAGCCCGTATGGGGTATGAGTGTGAGCGAACGCGACCTGGTCAAGGA
GGCCCGTCGCCTGTTCAATTCGTGTTAA
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protein sequence of jgi.p|Nanoce1779_2|566929

>mRNA_6136-protein ID=mRNA_6136-protein|Name=jgi.p|Nanoce1779_2|566929|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MGGGGGSITYSGGQATSGQGGFYGAGGARASKAQTAHRPEAVAHAADIKS
LRILMEEVDELQVELRAATELPKQISIKSAIKKKASGREMTELLKRLELK
GQPVWGMSVSERDLVKEARRLFNSC*
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mRNA from alignment at scaffold_14:599130..599507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6136 ID=mRNA_6136|Name=jgi.p|Nanoce1779_2|566929|organism=Nannochloropsis oceanica|type=mRNA|length=378bp|location=Sequence derived from alignment at scaffold_14:599130..599507+ (Nannochloropsis oceanica)
ATGGGTGGCGGGGGTGGCAGTATTACGTACAGCGGTGGGCAAGCGACGTC
CGGCCAGGGAGGTTTTTATGGGGCGGGTGGGGCGCGGGCAAGCAAGGCGC
AGACAGCACACCGTCCGGAAGCTGTCGCGCACGCCGCGGACATCAAGTCA
CTGCGCATCCTCATGGAGGAAGTGGATGAGCTACAGGTGGAGTTGCGGGC
TGCTACCGAACTCCCCAAGCAGATCTCTATTAAGTCGGCTATCAAGAAGA
AGGCATCGGGGAGGGAAATGACGGAGCTTTTGAAGCGGTTAGAACTGAAG
GGGCAGCCCGTATGGGGTATGAGTGTGAGCGAACGCGACCTGGTCAAGGA
GGCCCGTCGCCTGTTCAATTCGTGTTAA
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Coding sequence (CDS) from alignment at scaffold_14:599130..599507+

>mRNA_6136 ID=mRNA_6136|Name=jgi.p|Nanoce1779_2|566929|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_14:599130..599507+ (Nannochloropsis oceanica)
ATGGGTGGCGGGGGTGGCAGTATTACGTACAGCGGTGGGCAAGCGACGTC
CGGCCAGGGAGGTTTTTATGGGGCGGGTGGGGCGCGGGCAAGCAAGGCGC
AGACAGCACACCGTCCGGAAGCTGTCGCGCACGCCGCGGACATCAAGTCA
CTGCGCATCCTCATGGAGGAAGTGGATGAGCTACAGGTGGAGTTGCGGGC
TGCTACCGAACTCCCCAAGCAGATCTCTATTAAGTCGGCTATCAAGAAGA
AGGCATCGGGGAGGGAAATGACGGAGCTTTTGAAGCGGTTAGAACTGAAG
GGGCAGCCCGTATGGGGTATGAGTGTGAGCGAACGCGACCTGGTCAAGGA
GGCCCGTCGCCTGTTCAATTCGTGTTAA
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Synonyms
Publications