jgi.p|Nanoce1779_2|593867, mRNA_6135 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593867
Unique Name	mRNA_6135
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1315
Alignment location	scaffold_14:596453..598464 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593953
Track	FilteredModels2
ProteinId	593867

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:596453..598464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593867	gene_6135	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593867	mRNA_6135-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6135	CDS_6135	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:596453..598464+
coding sequence from alignment at scaffold_14:596453..598464+

mRNA sequence

>mRNA_6135 ID=mRNA_6135|Name=jgi.p|Nanoce1779_2|593867|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
AGTATGGCACGAGATGACGACGGCAATATCATCCAGCGGCGGTGGGTGCT
CACGGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATATCAGGCGCAA
GAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTAGGCTTTTGG
GGAACATCAGATAGGATCCGACTTGGGCAAAGCACCGGCGCCAGGAGACA
ACACATTTCTCTTTCACATGGCGATAGTGACAGAAGAGCCACAGTACCGT
GGGGCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCATGCCTTCT
TCCTTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAAAAGAAAGG
AATGATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTTTGGAGTGA
CGGGAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGGCCGTGTGC
TGCCCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATGTACGCAAC
AGTGAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAGCCCGGTAG
CCATTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGAACGAGTGC
GAGCTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTCGAACAGGA
GGACCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGATGGGGACC
TGGGTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGCTGGCTGGC
TGGGAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGAGAGGAGGA
GGACGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGACGAGGAGA
TAGAGAAGCTGACAAACCCCAAATACTGGGACGATGAGGAAGCGAGCGAT
GTTCGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTTCACTTA
CGATGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGCTCGTGC
TGGCAAAGGATGACCCGGTATGTTTGTGGGCGGGAGAAGAGAAAAGGGGA
GGGAGAAGACGTGCCAATCATTCACGTATGGCAATACATAACAAAGGACG
GCGTGTGTCTGACAAAGCCCTTTGTATCAATCCCCATCTCTGACCTGCCC
ATATATCCCTCCTTCCCTCCCCAAACGACAGGAGTTCAAGGGCATAACGA
AATGGGTTCTTCCCAGCGAAGAGGAAGCTGAGGAAGTTGCTCCTATCATG
GAAGGAATTATCAAGGTGAAGCTTGGCATTGACGACCAAGGCGAGGAGGA
GAGGGAAGAGGAGGA

protein sequence of jgi.p|Nanoce1779_2|593867

>mRNA_6135-protein ID=mRNA_6135-protein|Name=jgi.p|Nanoce1779_2|593867|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MARDDDGNIIQRRWVLTAGVSVCSTIMIISGARGVAASTGAFAFPLGFWG
TSDRIRLGQSTGARRQHISLSHGDSDRRATVPWGVHATRLSRPSSRMPSS
FSSTPPDGHATGEKKGMITVEDFVAQLEPFGVTGVRFGEDGQEDELAVCC
PESRRLMDCTVDMYATVNGTQYCVALPIFSPVAICYHKGERLIPVENECE
LMDRLYDFLAPTLEQEDLFLIRSPVCLTLDGDLGDLGEDGEFSEEELAGW
EEFDSEEDPWQDGEEEDEDEEDENKSEPLDEEIEKLTNPKYWDDEEASDV
REAYGEDWEKIAAFTYDGVDYTMVKILEPVLVLAKDDPVCLWAGEEKRGG
RRRANHSRMAIHNKGRRVSDKALCINPHL*

mRNA from alignment at scaffold_14:596453..598464+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6135 ID=mRNA_6135|Name=jgi.p|Nanoce1779_2|593867|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at scaffold_14:596453..598464+ (Nannochloropsis oceanica)
AGTATGGCACGAGATGACGACGGCAATATCATCCAGCGGCGGTGGGTGCT
CACGGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATATCAGGCGCAA
GAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTAGGCTTTTGG
GGAACATCAGATAGGATCCGACTTGGTACGTAAGGGACAAGGGCATAGAT
GTGCAAATGAGAGGCATCTACCACGCTCTTTTTTTCCTGGCACTGAATTT
CTCGCATTGGATCTTCAATACTAATCACCCCACATGCATCATTCCCTACA
GGGCAAAGCACCGGCGCCAGGAGACAACACATTTCTCTTTCACATGGCGA
TAGTGACAGAAGAGCCACAGTACCGTGGTACGTTTTAGAGACTCCGGGGG
TCTACCCCTGCTGGCATTATCCTATTTTGCCCGTGGAAACCCGACACATA
CATGGGCCTGCGCATTCACACTCTCACACACAATAACCGTACGGCCTCCA
TTTCTTGTCTCTACACATTCTCTGAGTGCACCATAAATGCCATTAAGGCG
GGTCCATCATAACCTAATGCCTGGCTTGCGTTGAATGTTCTCACCAATCA
GGGCCTGACCCCGCTCCCCTTTCCTATTTTCCTCCTTCACCTGATACTAG
GGGCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCATGCCTTCTT
CCTTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAAAAGAAAGGA
ATGATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTTTGGAGTGAC
GGGAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGGCCGTGTGCT
GCCCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATGTACGCAACA
GTGAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAGCCCGGTAGC
CATTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGAACGAGTGCG
AGCTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTCGAACAGGAG
GACCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGATGGGGACCT
GGGTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGCTGGCTGGCT
GGGAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGAGAGGAGGAG
GACGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGACGAGGAGAT
AGAGAAGCTGGTACGTATGTGTATGTCCAGGCGGTGCAAGGAAGAAGGGT
GTCGTGTATCGCGGGGCCGGGGAGAGAAGGAAACGCACGTTTCTTTGATT
GTTGTAATAGAAATAGAGGAAGACAATGATGCAATGCGTGTGATGATTAT
CATATGCACTCAGGTACTTAAAATAATCCTGTCCTATGAACACTGGCACG
ATTATACATTTTATTTTCTTGCACTTTCCCATTCAATCTCCCCATCCCAA
TCCTCTTCCCGACTCTCACCATTCCTCACCTCCCCAACCCCTCCCTCCAT
TCCTCCAGACAAACCCCAAATACTGGGACGATGAGGAAGCGAGCGATGTT
CGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTTCACTTACGA
TGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGCTCGTGCTGG
CAAAGGATGACCCGGTATGTTTGTGGGCGGGAGAAGAGAAAAGGGGAGGG
AGAAGACGTGCCAATCATTCACGTATGGCAATACATAACAAAGGACGGCG
TGTGTCTGACAAAGCCCTTTGTATCAATCCCCATCTCTGACCTGCCCATA
TATCCCTCCTTCCCTCCCCAAACGACAGGAGTTCAAGGGCATAACGAAAT
GGGTTCTTCCCAGCGAAGAGGAAGCTGAGGAAGTTGCTCCTATCATGGAA
GGAATTATCAAGGTGAAGCTTGGCATTGACGACCAAGGCGAGGAGGAGAG
GGAAGAGGAGGA

Coding sequence (CDS) from alignment at scaffold_14:596453..598464+

>mRNA_6135 ID=mRNA_6135|Name=jgi.p|Nanoce1779_2|593867|organism=Nannochloropsis oceanica|type=CDS|length=4560bp|location=Sequence derived from alignment at scaffold_14:596453..598464+ (Nannochloropsis oceanica)
ATGGCACGAGATGACGACGGCAATATCATCCAGCGGCGGTGGGTGCTCAC
GGCCGGCGTCAGTGTCTGCTCGACGATTATGATAATATCAGGCGCAAGAG
GCGTAGCAGCAAGCACGGGCGCCTTTGCCTTCCCGCTAGGCTTTTGGGGA
ACATCAGATAGGATCCGACTTGGGCAAAGCACCGGCGCCAGGAGACAACA
CATTTCTCTTTCACATGGCGATAGTGACAGAAGAGCCACAGTACCGTGGG
GCGTGCATGCCACCCGCCTGTCACGACCCTCCTCGCGCATGCCTTCTTCC
TTTTCATCTACACCTCCAGATGGTCACGCCACAGGAGAAAAGAAAGGAAT
GATCACGGTGGAGGACTTTGTTGCGCAGCTAGAGCCGTTTGGAGTGACGG
GAGTGCGCTTCGGGGAGGACGGGCAGGAGGACGAGCTGGCCGTGTGCTGC
CCCGAATCACGGCGGCTAATGGATTGTACGGTGGATATGTACGCAACAGT
GAATGGGACGCAGTACTGCGTGGCCTTGCCCATCTTTAGCCCGGTAGCCA
TTTGCTATCACAAAGGCGAGCGGCTGATTCCTGTTGAGAACGAGTGCGAG
CTCATGGACCGCCTGTACGATTTCTTGGCACCCACGCTCGAACAGGAGGA
CCTTTTTCTCATCCGTAGCCCAGTGTGTTTGACACTGGATGGGGACCTGG
GTGATTTGGGGGAGGACGGCGAATTCTCGGAAGAGGAGCTGGCTGGCTGG
GAGGAGTTTGACAGCGAGGAGGACCCATGGCAGGATGGAGAGGAGGAGGA
CGAGGACGAGGAAGATGAGAATAAGTCCGAGCCTCTGGACGAGGAGATAG
AGAAGCTGACAAACCCCAAATACTGGGACGATGAGGAAGCGAGCGATGTT
CGAGAAGCGTACGGAGAAGATTGGGAGAAGATTGCGGCCTTCACTTACGA
TGGCGTGGACTACACGATGGTCAAGATCCTGGAGCCCGTGCTCGTGCTGG
CAAAGGATGACCCGGTATGTTTGTGGGCGGGAGAAGAGAAAAGGGGAGGG
AGAAGACGTGCCAATCATTCACGTATGGCAATACATAACAAAGGACGGCG
TGTGTCTGACAAAGCCCTTTGTATCAATCCCCATCTCTGAATGGCACGAG
ATGACGACGGCAATATCATCCAGCGGCGGTGGGTGCTCACGGCCGGCGTC
AGTGTCTGCTCGACGATTATGATAATATCAGGCGCAAGAGGCGTAGCAGC
AAGCACGGGCGCCTTTGCCTTCCCGCTAGGCTTTTGGGGAACATCAGATA
GGATCCGACTTGGGCAAAGCACCGGCGCCAGGAGACAACACATTTCTCTT
TCACATGGCGATAGTGACAGAAGAGCCACAGTACCGTGGGGCGTGCATGC
CACCCGCCTGTCACGACCCTCCTCGCGCATGCCTTCTTCCTTTTCATCTA
CACCTCCAGATGGTCACGCCACAGGAGAAAAGAAAGGAATGATCACGGTG
GAGGACTTTGTTGCGCAGCTAGAGCCGTTTGGAGTGACGGGAGTGCGCTT
CGGGGAGGACGGGCAGGAGGACGAGCTGGCCGTGTGCTGCCCCGAATCAC
GGCGGCTAATGGATTGTACGGTGGATATGTACGCAACAGTGAATGGGACG
CAGTACTGCGTGGCCTTGCCCATCTTTAGCCCGGTAGCCATTTGCTATCA
CAAAGGCGAGCGGCTGATTCCTGTTGAGAACGAGTGCGAGCTCATGGACC
GCCTGTACGATTTCTTGGCACCCACGCTCGAACAGGAGGACCTTTTTCTC
ATCCGTAGCCCAGTGTGTTTGACACTGGATGGGGACCTGGGTGATTTGGG
GGAGGACGGCGAATTCTCGGAAGAGGAGCTGGCTGGCTGGGAGGAGTTTG
ACAGCGAGGAGGACCCATGGCAGGATGGAGAGGAGGAGGACGAGGACGAG
GAAGATGAGAATAAGTCCGAGCCTCTGGACGAGGAGATAGAGAAGCTGAC
AAACCCCAAATACTGGGACGATGAGGAAGCGAGCGATGTTCGAGAAGCGT
ACGGAGAAGATTGGGAGAAGATTGCGGCCTTCACTTACGATGGCGTGGAC
TACACGATGGTCAAGATCCTGGAGCCCGTGCTCGTGCTGGCAAAGGATGA
CCCGGTATGTTTGTGGGCGGGAGAAGAGAAAAGGGGAGGGAGAAGACGTG
CCAATCATTCACGTATGGCAATACATAACAAAGGACGGCGTGTGTCTGAC
AAAGCCCTTTGTATCAATCCCCATCTCTGAATGGCACGAGATGACGACGG
CAATATCATCCAGCGGCGGTGGGTGCTCACGGCCGGCGTCAGTGTCTGCT
CGACGATTATGATAATATCAGGCGCAAGAGGCGTAGCAGCAAGCACGGGC
GCCTTTGCCTTCCCGCTAGGCTTTTGGGGAACATCAGATAGGATCCGACT
TGGGCAAAGCACCGGCGCCAGGAGACAACACATTTCTCTTTCACATGGCG
ATAGTGACAGAAGAGCCACAGTACCGTGGGGCGTGCATGCCACCCGCCTG
TCACGACCCTCCTCGCGCATGCCTTCTTCCTTTTCATCTACACCTCCAGA
TGGTCACGCCACAGGAGAAAAGAAAGGAATGATCACGGTGGAGGACTTTG
TTGCGCAGCTAGAGCCGTTTGGAGTGACGGGAGTGCGCTTCGGGGAGGAC
GGGCAGGAGGACGAGCTGGCCGTGTGCTGCCCCGAATCACGGCGGCTAAT
GGATTGTACGGTGGATATGTACGCAACAGTGAATGGGACGCAGTACTGCG
TGGCCTTGCCCATCTTTAGCCCGGTAGCCATTTGCTATCACAAAGGCGAG
CGGCTGATTCCTGTTGAGAACGAGTGCGAGCTCATGGACCGCCTGTACGA
TTTCTTGGCACCCACGCTCGAACAGGAGGACCTTTTTCTCATCCGTAGCC
CAGTGTGTTTGACACTGGATGGGGACCTGGGTGATTTGGGGGAGGACGGC
GAATTCTCGGAAGAGGAGCTGGCTGGCTGGGAGGAGTTTGACAGCGAGGA
GGACCCATGGCAGGATGGAGAGGAGGAGGACGAGGACGAGGAAGATGAGA
ATAAGTCCGAGCCTCTGGACGAGGAGATAGAGAAGCTGACAAACCCCAAA
TACTGGGACGATGAGGAAGCGAGCGATGTTCGAGAAGCGTACGGAGAAGA
TTGGGAGAAGATTGCGGCCTTCACTTACGATGGCGTGGACTACACGATGG
TCAAGATCCTGGAGCCCGTGCTCGTGCTGGCAAAGGATGACCCGGTATGT
TTGTGGGCGGGAGAAGAGAAAAGGGGAGGGAGAAGACGTGCCAATCATTC
ACGTATGGCAATACATAACAAAGGACGGCGTGTGTCTGACAAAGCCCTTT
GTATCAATCCCCATCTCTGAATGGCACGAGATGACGACGGCAATATCATC
CAGCGGCGGTGGGTGCTCACGGCCGGCGTCAGTGTCTGCTCGACGATTAT
GATAATATCAGGCGCAAGAGGCGTAGCAGCAAGCACGGGCGCCTTTGCCT
TCCCGCTAGGCTTTTGGGGAACATCAGATAGGATCCGACTTGGGCAAAGC
ACCGGCGCCAGGAGACAACACATTTCTCTTTCACATGGCGATAGTGACAG
AAGAGCCACAGTACCGTGGGGCGTGCATGCCACCCGCCTGTCACGACCCT
CCTCGCGCATGCCTTCTTCCTTTTCATCTACACCTCCAGATGGTCACGCC
ACAGGAGAAAAGAAAGGAATGATCACGGTGGAGGACTTTGTTGCGCAGCT
AGAGCCGTTTGGAGTGACGGGAGTGCGCTTCGGGGAGGACGGGCAGGAGG
ACGAGCTGGCCGTGTGCTGCCCCGAATCACGGCGGCTAATGGATTGTACG
GTGGATATGTACGCAACAGTGAATGGGACGCAGTACTGCGTGGCCTTGCC
CATCTTTAGCCCGGTAGCCATTTGCTATCACAAAGGCGAGCGGCTGATTC
CTGTTGAGAACGAGTGCGAGCTCATGGACCGCCTGTACGATTTCTTGGCA
CCCACGCTCGAACAGGAGGACCTTTTTCTCATCCGTAGCCCAGTGTGTTT
GACACTGGATGGGGACCTGGGTGATTTGGGGGAGGACGGCGAATTCTCGG
AAGAGGAGCTGGCTGGCTGGGAGGAGTTTGACAGCGAGGAGGACCCATGG
CAGGATGGAGAGGAGGAGGACGAGGACGAGGAAGATGAGAATAAGTCCGA
GCCTCTGGACGAGGAGATAGAGAAGCTGACAAACCCCAAATACTGGGACG
ATGAGGAAGCGAGCGATGTTCGAGAAGCGTACGGAGAAGATTGGGAGAAG
ATTGCGGCCTTCACTTACGATGGCGTGGACTACACGATGGTCAAGATCCT
GGAGCCCGTGCTCGTGCTGGCAAAGGATGACCCGGTATGTTTGTGGGCGG
GAGAAGAGAAAAGGGGAGGGAGAAGACGTGCCAATCATTCACGTATGGCA
ATACATAACAAAGGACGGCGTGTGTCTGACAAAGCCCTTTGTATCAATCC
CCATCTCTGA

Synonyms

Publications