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Properties
Property Name | Value |
TranscriptId | 593946 |
Track | FilteredModels2 |
ProteinId | 593860 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_14 | supercontig | scaffold_14:592853..596087 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6134 ID=mRNA_6134|Name=jgi.p|Nanoce1779_2|593860|organism=Nannochloropsis oceanica|type=mRNA|length=2957bp TGGTGGATATGCAAGAAGAGATGGGGAAGAAAGGGAGGGATGGGGGATCG AAATGCTGATGTTTGATAACCCTCATGATTTGGCCACTCTAAATTGTCTT TCCTCTCTTGGCTTTACCATTACAGGACTCGCAGTCGGAAATTTTAGGTA AGCTTAAAACACGAGAGAGAGGAAAGGAAGTTTGTATTCGAGGCAGACGG CGTCGACTCATTCTTTGTAATCTCGACCAACCATAATCCCTCTACACAGT GCAACAGTCCATCGACCGGATGATTTTGCACGGGAACATGACGGTGCTCA TAATCGCGCACAGGTACGTACGGTATTGTCCCATGGTGTTGTCTATCCGG GCGAAAATCAGCACGTACATCTGTTGTTCTTGTCTCTTTGGGTCCGCGTT AAGATCTTGATCCTGACATGGACAAACAAGCCTCATCTGCTTTCCTCATT TTTAAAAAAACTTTCCTCTCTTGGACCACTGTGTATCTTTCAGGCTCAGC ACAATAGTGAATGCAGATTCCATTCTCGTCGTCCAGGCCGGGCAAGTAGT CGAGTGCGGCACTCACTCTGAACTCATTGCTAAGGGTGGGGTCTACTCCT CCCTTGTTTCAAAGCAGATGGAGGCCCTGGATACTGCCAACAATAATATC ACCAAAAGGGGAGGAGAAATCGTAGAGACCGGGTGAATATTAGAAGCAAA GGCGCAAAAGCACTAATCGACGCGCATGTATTCATGTGTGTACCATTAGA AGCTAGAGTGTGGGAGAAACGCAATGATAGCTTATATGTACAGGTGCCAA AGCAAAACACCACCTAAATCACAGAATGTACATGTAAATCTCTTCATTAA GCTATTTTTTACTTTGTCCTTGCCTTGTACCGGAAGACCGTAGAGGTCCA TCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCGACTGCAGCGGATTGCA GCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAAGAAGTATCCCACCCAA CCCCTCTCGAGGCGCTATTGCTCCACACTTGCCTGAATTTGGCTTCTTAC CATCAAGCCCGGAATATCCAATCCTTTCTCGCAAAAGTGTCAGCAGCCAG CCAGGACCAAGGAGTATCACGTCTAGAAGGCACGCTACTCGGACCCTCAC GACCTCATCATGGCCTTTGCACTGGGACTATTTATGCTGCTCATGGTGCC TGGATCGTCCATCGCTAGACTGCGTACGACAGGGAGCATGGTACGTGGTG CAGTGTGCTTATGGCGGGTGGGAGGTTACTTATGAGCCCATGGGATGAGA TATTCTACACGGTACGGCATCGGCTTGCTCAGGTGCGAGTCATATAAACT CTTCCCTAGGGTATAACATGTCCTCACTCAACTTCTTTTCCTTAAGCCGG CATATCGGCAGAGGAGATGCACTCCTCGACACATCTCGTCAATCACGGGC TTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCAGCTCATCCTCAGCCGG AGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCACCTGCAGGAGACCTTT TGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCGCCACATTCAA CACAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTTCTCTGCTCGA TGTCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTTGTGAAAGCTT CCATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCATTGGTGCTTTT TTCACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCAGCTTGAGCTC AATCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTAAATGTTGCCA AGACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACTTCCCCTGTTC GGTACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGGTCGTCACTTG GTTGCTGGGCGTGGATGTGAACAGTGCAAAAGGTCGCCAACTGCGCGTGC TCCAGACCTTTGGCAACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTC CTGCTTCGAAATCACCCCGACCCGAGCGTGCTACCACTCGCCATTTCCTA CATTAGTTTCTATCTTCTGGGATGGACGCCTATCTTTTGGACGTATGGGT ATAATCTTCTAGTTGATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAG AGGGCAGCTATCACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAA CCCGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCG TCGGGGGATTGCTGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGG CCCGCAGCTCCACTTGGGATGCTTACGAACGCAATTCAAACTATTGGCTC AGCCTACACAAGCATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGC CCCTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTC GTGAGGGTCTCGAAAGGCAAGGCCATCCCGATATGGCGTCAGATTGCCAG TGTGTGCCTCGTGCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCA TTTTGCGGTCCATGTCTACAGGGTTCATCAAACTGGATCGGCTCATGGTG TTCGTGCTATTCTTACAGAGCTGCATGCCGAGCGCACAAAACAGCGTGCT TATGGTGCAGCTCAGCGGTCGCACTGCGGACGCCACCAAGCTAGCACGCA TGCTCCTCTTTATATATTCCCTTTCTTGCATTCCCATTTCCATCCTGTTG ACGTTGTTTTTGCAGAAATTCAGTCTGTAACTGTCCTGTTGTGACAGGTT GGTGACGCAGGTGGAAGTGGTTGGGAAAGGGTACAAGCACGAGGTGTGAA TTCTCGGCGACAAACAGAAATGTACTGAAATAAAAAAGAAAAGAAAAATA CGCATCA back to topprotein sequence of jgi.p|Nanoce1779_2|593860 >mRNA_6134-protein ID=mRNA_6134-protein|Name=jgi.p|Nanoce1779_2|593860|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp MESELWPLLRRHRHIQHNHEQPSTQQQHPSLLDVRGGAMVTLDPVVVKAS MTAVGELLIACSIGAFFTRRGILDRNAIASLSSIVYHILLPSLLVVNVAK TVYATPLLTLLPLPLFGTMQIILCSCIAWVVTWLLGVDVNSAKGRQLRVL QTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGY NLLVDSPPLSPESVDERAAITSLADKAKYLFKNPPPVLKRVASPPIIGSV GGLLLGISPLAKLFLGPAAPLGMLTNAIQTIGSAYTSMGLLVLAGSLALP LPALSAAEKVAEAGEVVRVSKGKAIPIWRQIASVCLVRFCLCPALCLSII LRSMSTGFIKLDRLMVFVLFLQSCMPSAQNSVLMVQLSGRTADATKLARM LLFIYSLSCIPISILLTLFLQKFSL* back to topmRNA from alignment at scaffold_14:592853..596087+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6134 ID=mRNA_6134|Name=jgi.p|Nanoce1779_2|593860|organism=Nannochloropsis oceanica|type=mRNA|length=3235bp|location=Sequence derived from alignment at scaffold_14:592853..596087+ (Nannochloropsis oceanica) TGGTGGATATGCAAGAAGAGATGGGGAAGAAAGGGAGGGATGGGGGATCG
AAATGCTGATGTTTGATAACCCTCATGATTTGGCCACTCTAAATTGTCTT
TCCTCTCTTGGCTTTACCATTACAGGACTCGCAGTCGGAAATTTTAGGTA
AGCTTAAAACACGAGAGAGAGGAAAGGAAGTTTGTATTCGAGGCAGACGG
CGTCGACTCATTCTTTGTAATCTCGACCAACCATAATCCCTCTACACAGT
GCAACAGTCCATCGACCGGATGATTTTGCACGGGAACATGACGGTGCTCA
TAATCGCGCACAGGTACGTACGGTATTGTCCCATGGTGTTGTCTATCCGG
GCGAAAATCAGCACGTACATCTGTTGTTCTTGTCTCTTTGGGTCCGCGTT
AAGATCTTGATCCTGACATGGACAAACAAGCCTCATCTGCTTTCCTCATT
TTTAAAAAAACTTTCCTCTCTTGGACCACTGTGTATCTTTCAGGCTCAGC
ACAATAGTGAATGCAGATTCCATTCTCGTCGTCCAGGCCGGGCAAGTAGT
CGAGTGCGGCACTCACTCTGAACTCATTGCTAAGGGTGGGGTCTACTCCT
CCCTTGTTTCAAAGCAGATGGAGGCCCTGGATACTGCCAACAATAATATC
ACCAAAAGGGGAGGAGAAATCGTAGAGACCGGGTGAATATTAGAAGCAAA
GGCGCAAAAGCACTAATCGACGCGCATGTATTCATGTGTGTACCATTAGA
AGCTAGAGTGTGGGAGAAACGCAATGATAGCTTATATGTACAGGTGCCAA
AGCAAAACACCACCTAAATCACAGAATGTACATGTAAATCTCTTCATTAA
GCTATTTTTTACTTTGTCCTTGCCTTGTACCGGAAGACCGTAGAGGTCCA
TCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCGACTGCAGCGGATTGCA
GCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAAGAAGTATCCCACCCAA
CCCCTCTCGAGGCGCTATTGCTCCACACTTGCCTGAATTTGGCTTCTTAC
CATCAAGCCCGGAATATCCAATCCTTTCTCGCAAAAGTGTCAGCAGCCAG
CCAGGACCAAGGAGTATCACGTCTAGAAGGCACGCTACTCGGACCCTCAC
GACCTCATCATGGCCTTTGCACTGGGACTATTTATGCTGCTCATGGTGCC
TGGATCGTCCATCGCTAGACTGCGTACGACAGGGAGCATGGTACGTGGTG
CAGTGTGCTTATGGCGGGTGGGAGGTTACTTATGAGCCCATGGGATGAGA
TATTCTACACGGTACGGCATCGGCTTGCTCAGGTGCGAGTCATATAAACT
CTTCCCTAGGGTATAACATGTCCTCACTCAACTTCTTTTCCTTAAGCCGG
CATATCGGCAGAGGAGATGCACTCCTCGACACATCTCGTCAATCACGGGC
TTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCAGCTCATCCTCAGCCGG
AGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCACCTGCAGGAGACCTTT
TGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCGCCACATTCAA
CACAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTTCTCTGCTCGA
TGTCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTTGTGAAAGCTT
CCATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCATTGGTGCTTTT
TTCACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCAGCTTGAGCTC
AATCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTAAATGTTGCCA
AGACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACTTCCCCTGTTC
GGTACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGGTCGTCACTTG
GTTGCTGGGCGTGGATGTGAACAGGTGCGTAAATAGATATAATGCGGTCT
GCAGCGTCCAAATTTCACTTTGTCCCTTCAATTCGCCTCACTTAATGCTG
CATTTTCATACACAACTATCGTTCACGTGCCATACAATACACACAGTGCA
AAAGGTCGCCAACTGCGCGTGCTCCAGACCTTTGGCAACGGTGGCGTGGC
TCCCATTCTGTTCGCTACCGTCCTGCTTCGAAATCACCCCGACCCGAGCG
TGCTACCACTCGCCATTTCCTACATTAGTTTCTATCTTCTGGGATGGACG
CCTATCTTTTGGACGTATGGGTATAATCTTCTAGTTGATTCCCCACCGCT
ATCTCCTGAGTCCGTCGACGAGAGGGCAGCTATCACAAGCCTGGCGGACA
AAGCCAAGTACCTTTTCAAGAACCCGCCCCCTGTGCTCAAGCGCGTTGCC
TCCCCACCCATCATCGGAAGCGTCGGGGGATTGCTGCTGGGCATCAGTCC
ATTGGCCAAGCTTTTTTTGGGGCCCGCAGCTCCACTTGGGATGCTTACGA
ACGCAATTCAAACTATTGGCTCAGCCTACACAAGCATGGGTCTCCTGGTG
CTGGCCGGTAGCCTCGCCTTGCCCCTCCCAGCTCTCTCCGCTGCAGAGAA
AGTCGCCGAAGCTGGCGAGGTCGTGAGGGTCTCGAAAGGCAAGGCCATCC
CGATATGGCGTCAGATTGCCAGTGTGTGCCTCGTGCGATTCTGTCTGTGT
CCTGCGCTCTGCCTTTCCATCATTTTGCGGTCCATGTCTACAGGGTTCAT
CAAACTGGATCGGCTCATGGTGTTCGTGCTATTCTTACAGAGCTGCATGC
CGAGGTAAGCTCCCTCTGTCCCTCCGTCGCTCTCTTTCTCCATTCTTCTA
CTCTATCCCTCCTTCCTCGTCCCCGCTCTTTCACATTCCAGCGCACCACC
TGTCTTTGTTACTGCAGTTTTCCTTCTGCCAACTTACATTCCTCGCTTTC
TTTTTTCTAGCGCACAAAACAGCGTGCTTATGGTGCAGCTCAGCGGTCGC
ACTGCGGACGCCACCAAGCTAGCACGCATGCTCCTCTTTATATATTCCCT
TTCTTGCATTCCCATTTCCATCCTGTTGACGTTGTTTTTGCAGAAATTCA
GTCTGTAACTGTCCTGTTGTGACAGGTTGGTGACGCAGGTGGAAGTGGTT
GGGAAAGGGTACAAGCACGAGGTGTGAATTCTCGGCGACAAACAGAAATG
TACTGAAATAAAAAAGAAAAGAAAAATACGCATCA back to topCoding sequence (CDS) from alignment at scaffold_14:592853..596087+ >mRNA_6134 ID=mRNA_6134|Name=jgi.p|Nanoce1779_2|593860|organism=Nannochloropsis oceanica|type=CDS|length=3834bp|location=Sequence derived from alignment at scaffold_14:592853..596087+ (Nannochloropsis oceanica) ATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCGCCACATTCAACA CAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTTCTCTGCTCGATG TCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTTGTGAAAGCTTCC ATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCATTGGTGCTTTTTT CACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCAGCTTGAGCTCAA TCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTAAATGTTGCCAAG ACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACTTCCCCTGTTCGG TACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGGTCGTCACTTGGT TGCTGGGCGTGGATGTGAACAGTGCAAAAGGTCGCCAACTGCGCGTGCTC CAGACCTTTGGCAACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTCCT GCTTCGAAATCACCCCGACCCGAGCGTGCTACCACTCGCCATTTCCTACA TTAGTTTCTATCTTCTGGGATGGACGCCTATCTTTTGGACGTATGGGTAT AATCTTCTAGTTGATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAGAG GGCAGCTATCACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAACC CGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCGTC GGGGGATTGCTGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGGCC CGCAGCTCCACTTGGGATGCTTACGAACGCAATTCAAACTATTGGCTCAG CCTACACAAGCATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGCCC CTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTCGT GAGGGTCTCGAAAGGCAAGGCCATCCCGATATGGCGTCAGATTGCCAGTG TGTGCCTCGTGCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCATT TTGCGGTCCATGTCTACAGGGTTCATCAAACTGGATCGGCTCATGGTGTT CGTGCTATTCTTACAGAGCTGCATGCCGAGCGCACAAAACAGCGTGCTTA TGGTGCAGCTCAGCGGTCGCACTGCGGACGCCACCAAGCTAGCACGCATG CTCCTCTTTATATATTCCCTTTCTTGCATTCCCATTTCCATCCTGTTGAC GTTGTTTTTGCAGAAATTCAGTCTGTAAATGGAGTCGGAGTTGTGGCCTT TGCTTCGGCGGCACCGCCACATTCAACACAACCATGAGCAACCCTCTACG CAGCAGCAACACCCTTCTCTGCTCGATGTCCGCGGTGGTGCCATGGTGAC CCTGGATCCCGTAGTTGTGAAAGCTTCCATGACAGCTGTGGGTGAGCTTT TGATTGCTTGTAGCATTGGTGCTTTTTTCACCCGCCGGGGTATCTTGGAT CGAAATGCCATTGCCAGCTTGAGCTCAATCGTATACCACATCCTCCTACC GTCTCTTCTTGTTGTAAATGTTGCCAAGACAGTCTATGCCACTCCCCTGC TCACGTTGCTCCCACTTCCCCTGTTCGGTACGATGCAAATCATCCTCTGC AGCTGCATTGCCTGGGTCGTCACTTGGTTGCTGGGCGTGGATGTGAACAG TGCAAAAGGTCGCCAACTGCGCGTGCTCCAGACCTTTGGCAACGGTGGCG TGGCTCCCATTCTGTTCGCTACCGTCCTGCTTCGAAATCACCCCGACCCG AGCGTGCTACCACTCGCCATTTCCTACATTAGTTTCTATCTTCTGGGATG GACGCCTATCTTTTGGACGTATGGGTATAATCTTCTAGTTGATTCCCCAC CGCTATCTCCTGAGTCCGTCGACGAGAGGGCAGCTATCACAAGCCTGGCG GACAAAGCCAAGTACCTTTTCAAGAACCCGCCCCCTGTGCTCAAGCGCGT TGCCTCCCCACCCATCATCGGAAGCGTCGGGGGATTGCTGCTGGGCATCA GTCCATTGGCCAAGCTTTTTTTGGGGCCCGCAGCTCCACTTGGGATGCTT ACGAACGCAATTCAAACTATTGGCTCAGCCTACACAAGCATGGGTCTCCT GGTGCTGGCCGGTAGCCTCGCCTTGCCCCTCCCAGCTCTCTCCGCTGCAG AGAAAGTCGCCGAAGCTGGCGAGGTCGTGAGGGTCTCGAAAGGCAAGGCC ATCCCGATATGGCGTCAGATTGCCAGTGTGTGCCTCGTGCGATTCTGTCT GTGTCCTGCGCTCTGCCTTTCCATCATTTTGCGGTCCATGTCTACAGGGT TCATCAAACTGGATCGGCTCATGGTGTTCGTGCTATTCTTACAGAGCTGC ATGCCGAGCGCACAAAACAGCGTGCTTATGGTGCAGCTCAGCGGTCGCAC TGCGGACGCCACCAAGCTAGCACGCATGCTCCTCTTTATATATTCCCTTT CTTGCATTCCCATTTCCATCCTGTTGACGTTGTTTTTGCAGAAATTCAGT CTGTAAATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCGCCACAT TCAACACAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTTCTCTGC TCGATGTCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTTGTGAAA GCTTCCATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCATTGGTGC TTTTTTCACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCAGCTTGA GCTCAATCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTAAATGTT GCCAAGACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACTTCCCCT GTTCGGTACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGGTCGTCA CTTGGTTGCTGGGCGTGGATGTGAACAGTGCAAAAGGTCGCCAACTGCGC GTGCTCCAGACCTTTGGCAACGGTGGCGTGGCTCCCATTCTGTTCGCTAC CGTCCTGCTTCGAAATCACCCCGACCCGAGCGTGCTACCACTCGCCATTT CCTACATTAGTTTCTATCTTCTGGGATGGACGCCTATCTTTTGGACGTAT GGGTATAATCTTCTAGTTGATTCCCCACCGCTATCTCCTGAGTCCGTCGA CGAGAGGGCAGCTATCACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCA AGAACCCGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCACCCATCATCGGA AGCGTCGGGGGATTGCTGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTT GGGGCCCGCAGCTCCACTTGGGATGCTTACGAACGCAATTCAAACTATTG GCTCAGCCTACACAAGCATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCC TTGCCCCTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGA GGTCGTGAGGGTCTCGAAAGGCAAGGCCATCCCGATATGGCGTCAGATTG CCAGTGTGTGCCTCGTGCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCC ATCATTTTGCGGTCCATGTCTACAGGGTTCATCAAACTGGATCGGCTCAT GGTGTTCGTGCTATTCTTACAGAGCTGCATGCCGAGCGCACAAAACAGCG TGCTTATGGTGCAGCTCAGCGGTCGCACTGCGGACGCCACCAAGCTAGCA CGCATGCTCCTCTTTATATATTCCCTTTCTTGCATTCCCATTTCCATCCT GTTGACGTTGTTTTTGCAGAAATTCAGTCTGTAA back to top
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