jgi.p|Nanoce1779_2|593848, mRNA_6132 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593848
Unique Name	mRNA_6132
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1621
Alignment location	scaffold_14:587733..589353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593934
Track	FilteredModels2
ProteinId	593848

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:587733..589353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593848	gene_6132	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593848	mRNA_6132-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6132	CDS_6132	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:587733..589353+
coding sequence from alignment at scaffold_14:587733..589353+

mRNA sequence

>mRNA_6132 ID=mRNA_6132|Name=jgi.p|Nanoce1779_2|593848|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
GGTGGTTGTGCTGCTCGGTGGAAGGTGTGATCGTCAATCGGTTGCTGGAG
CCTTTGTCAAAGTGCGGGGCGTAGAGGCTTGCATGGGTTGTGTTTGGGGG
GCGAGGAGGGAAGAAATATCGGAATCAGTATATCGTGCTTGCGATTGTGG
TCGTTAACTTAAGGTTACCAGTCGTACGGGTGAAGGAGTGGGAGATGAGG
AAAATACGGATGTTCAACGAAGTTCGTTGTCCGTCGAGGTGTCATGTGAA
AAAGCAAAAGCAGACGCCTGGCAAACTTCGTAAAATTACTGCACTGTACT
TAAACTAAAATACTGCACTAAAACAAACAAGTCACGACTATTTGTGCCCT
GCACAACTCTACAGAGCTCACTGCACCTGTTGCCCAGATCTAAGCTCTCT
ACCGAGCAAGTATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGG
CCGGTGGAGTTGATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTC
CCTCCTCGCAAGCTACTCGTCGCCACCACGAACACTGCACCACAGCGATC
CCGACCGCCGAAAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGC
GGCTTTGACGCCTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCC
GCGGAAACGCACCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGA
CCAAGGTAAGCGTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAG
ACGTCCCGGCCCCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGG
CAGCGGATCAGGCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGG
GGGAGGAGCACGTCACATATATCACGCACGATTCGTACTACAAGGATTTG
AGCCATTTGACCTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAA
TTCCCTGGACACAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGG
GTGAATCGGTTGAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTG
GCTAGCACTACCACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTAT
TTTAATCTTTGCGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTAT
TCGTTGACACTGAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGAC
GTGAAAGAGCGTGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAA
GACCGTGCGGCCCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGG
CGGACGTTATCATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTC
CTCAGCCGCCTCCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACC
GCGGACGCTACAGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCT
CTTCCATTGCCTTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATG
AAGCAATCGTCAGTATAAAAAGAAAAGAAATAAAATATGATTATATTTCG
CCATTTAACTTGAAATTGTATTCCAGCAGAGCGACAGTGCACTTTACAAA
AGAAACAAAAGTTTGCATGCA

protein sequence of jgi.p|Nanoce1779_2|593848

>mRNA_6132-protein ID=mRNA_6132-protein|Name=jgi.p|Nanoce1779_2|593848|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSSSASASNSAARPVELIVACITGAVVAYSLLASYSSPPRTLHHSDPDRR
KVDEGNVSLVDGSGFDACIPPSVRSLLPRPRKRTDSTVAIDESTGLTKVS
VEPMLNDLEQQIKTSRPPASGPLTVGVAGGSGSGKTTFARALYEALGEEH
VTYITHDSYYKDLSHLTLAERAVANFDHPNSLDTALLVEHLKALKRGESV
EVPEYCFATHARLASTTTVEPRRVILVEGILIFADRALVQELAIKVFVDT
ESDLRLIRRIHRDVKERGRSLESIVDQYIKTVRPMHMDFVEPSKREADVI
IPLGMNQVALDMFLSRLQAEVADKLPNSTPRTLQTLVQPSSHKKNASSIA
LGKQGSLSLGRSMKQSSV*

mRNA from alignment at scaffold_14:587733..589353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6132 ID=mRNA_6132|Name=jgi.p|Nanoce1779_2|593848|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at scaffold_14:587733..589353+ (Nannochloropsis oceanica)
GGTGGTTGTGCTGCTCGGTGGAAGGTGTGATCGTCAATCGGTTGCTGGAG
CCTTTGTCAAAGTGCGGGGCGTAGAGGCTTGCATGGGTTGTGTTTGGGGG
GCGAGGAGGGAAGAAATATCGGAATCAGTATATCGTGCTTGCGATTGTGG
TCGTTAACTTAAGGTTACCAGTCGTACGGGTGAAGGAGTGGGAGATGAGG
AAAATACGGATGTTCAACGAAGTTCGTTGTCCGTCGAGGTGTCATGTGAA
AAAGCAAAAGCAGACGCCTGGCAAACTTCGTAAAATTACTGCACTGTACT
TAAACTAAAATACTGCACTAAAACAAACAAGTCACGACTATTTGTGCCCT
GCACAACTCTACAGAGCTCACTGCACCTGTTGCCCAGATCTAAGCTCTCT
ACCGAGCAAGTATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGG
CCGGTGGAGTTGATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTC
CCTCCTCGCAAGCTACTCGTCGCCACCACGAACACTGCACCACAGCGATC
CCGACCGCCGAAAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGC
GGCTTTGACGCCTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCC
GCGGAAACGCACCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGA
CCAAGGTAAGCGTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAG
ACGTCCCGGCCCCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGG
CAGCGGATCAGGCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGG
GGGAGGAGCACGTCACATATATCACGCACGATTCGTACTACAAGGATTTG
AGCCATTTGACCTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAA
TTCCCTGGACACAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGG
GTGAATCGGTTGAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTG
GCTAGCACTACCACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTAT
TTTAATCTTTGCGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTAT
TCGTTGACACTGAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGAC
GTGAAAGAGCGTGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAA
GACCGTGCGGCCCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGG
CGGACGTTATCATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTC
CTCAGCCGCCTCCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACC
GCGGACGCTACAGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCT
CTTCCATTGCCTTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATG
AAGCAATCGTCAGTATAAAAAGAAAAGAAATAAAATATGATTATATTTCG
CCATTTAACTTGAAATTGTATTCCAGCAGAGCGACAGTGCACTTTACAAA
AGAAACAAAAGTTTGCATGCA

Coding sequence (CDS) from alignment at scaffold_14:587733..589353+

>mRNA_6132 ID=mRNA_6132|Name=jgi.p|Nanoce1779_2|593848|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_14:587733..589353+ (Nannochloropsis oceanica)
ATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGGCCGGTGGAGTT
GATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTCCCTCCTCGCAA
GCTACTCGTCGCCACCACGAACACTGCACCACAGCGATCCCGACCGCCGA
AAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGCGGCTTTGACGC
CTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCCGCGGAAACGCA
CCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGACCAAGGTAAGC
GTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAGACGTCCCGGCC
CCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGGCAGCGGATCAG
GCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGGGGGAGGAGCAC
GTCACATATATCACGCACGATTCGTACTACAAGGATTTGAGCCATTTGAC
CTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAATTCCCTGGACA
CAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGGGTGAATCGGTT
GAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTGGCTAGCACTAC
CACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTATTTTAATCTTTG
CGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTATTCGTTGACACT
GAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGACGTGAAAGAGCG
TGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAAGACCGTGCGGC
CCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGGCGGACGTTATC
ATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTCCTCAGCCGCCT
CCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACCGCGGACGCTAC
AGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCTCTTCCATTGCC
TTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATGAAGCAATCGTC
AGTATAA

Synonyms

Publications