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Properties
| Property Name | Value |
|---|
| TranscriptId | 82531 |
| Track | FilteredModels2 |
| ProteinId | 82445 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:583253..585621 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6130 ID=mRNA_6130|Name=jgi.p|Nanoce1779_2|82445|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp
ATACCACAGCGCCATCGTCATCGTGGTATCTAGGGCCCGCAGCGGCAGCC
AGAATGAGTGGTAAATTCAAGCCAGTAAGGGCGTTTGTAACCCGCCTCCA
TGGCGCGGTCCGGGCGGAGCGTCCGAATGAAGAGCGGATCCACGATGTGT
ACCAAGAGTCAGAGGAAGTGGCCAAGGAGTTTAACAGCGACCCGTGGCCC
AAGGCCGAGGCGGTGGCAAGCCTTGTTCAGGGAGATAGAGTCTTCCTTTT
GCTTTACACGGAGATGGCGTTTCAAGCATTTTTTAAGAATAAGAATGTGA
AGGCTACCATGGGTGACCGTGTGGGGTCCTGGGAGAATTACAGCGCGCTC
TTCACGGCGCTGATCCAAGACGAGGATGGACAGGCCATGACGGAGGCAGC
GAAGGCGCATGGGGCTGAAGTGATGATTACTGGCAAGTGGGCTTTTGACA
TCATTTATGAGTTTGTATATCAATTTCAGGAGGCCTGCCAATACCGCGCT
TCCGCCCTTCAGAGCGCCACAAATGAGGCCGAGCTCCAGACGGTGCTGGA
GCACAAGGACGTGTGGACCGTGGACAAGGTGTTCAATTTCCTCCACCAGC
TTGTCAAGGTCTCTAAGGTACGAGAGGTCCTGGAATCCGCGGCGCTCAGC
AAGGGTGGACTGGATGGGGAAACTGTCAACAGTGGAGGGGCGCCTGTGCC
GCTGGTGACGTACCCGAGTAAGCTCCATTATTTGCTTGGGTACTTTGCGT
TGGTGGGCTTGAATCGATTGGAATGCTTGTTGGGAGATTTTCAGGATGCG
TTGGCGGTGGCAGAGCCGGTGATGGAGGAGAGTCGGTCGGGAAATGCAGG
GGCGGGATTGTTATTGTCCTCCAGCATAATTGCGCAGGTCTCATTGCATT
ATCACATTGGCTTGAGCTACCTGATGATCCGAAAATACCAGGAGGCGATC
AAGACCTTCGTCTCGGTGCTGGACGTCTACTTTAAGCACATGGAATCTAT
CAAGCAGCAACAACGCGCGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAAG
GCCAGCCTGTCCAGCCGCCGGCCAAGAACGCGGACGACCTCGCAGCAGGC
AAGCTCGTGGACAAGGTAGCAGCGATGCTCTTGATCGTGCACCATCTCTG
CCCGGGGCAGCACATCCCTGAGAATATTCGTGGGCATCTGATGGGTGAAA
AAATGAAGGACAAGCTTCGCCAGGTGCAGTCGGGCGACGTGGACGCCATC
GTCACCCTGTTTGTCCTCTCCGCCCCCAAATTTATCAGCCCTGCCACGGA
CTACGAAGCAGCCGTGTCTGCCATGGGTACTGCGGGGCCGGGTGGGGCGG
GCGGCAGGGGGGGAGGAGGGGGAGCAGGCCGGTCAGGGACTTATGGAGGG
TTGCAGCGGATTGTGTTTGCGGAGGAGGTGCGTCAGATGCTGGAGTTGAG
GAAGCTGAGGGATTACCTGCGGTTGTACTCGACGATTGGACTTGGGAAGC
TATCGGCTTTTACGGGGCAGGACCCGGAGGACATTCGGAGGGAGTTGGTG
CAGTACAAGCATAAGCTGCTGCAGTTGGAGGCGAGTACGGGCAGCTCTGT
GCAGCCGAGTTTGGATTTCCATTATTATCTAGATGGGGACATGGTCCATG
TTGATGCGGGCGAGCGTGAGAATAGACAGGAGGTGAGCAAGCACTTCCAG
TATCAGATTCGGAAGTTGGAGAATCTGGCAAGGACGTTGCGGCGATAGCC
GAAAGACGGGAGAAGAGAGGAGGAGGAGGAGGGAGAAGGGGTGGGCGGAG
ATGAAGGATGAGGGAAAGAGGTGTGTTTATCTGTGCAAGGATAAGCTAGC
AGGTGCACACGTTGTGGTAGATGTCAAGACAGGTCAAAGCGAAATGAAGA
AAGGACATGTTGAAACATCGCGAGATCGCTGTGAGCGTCATA back to topprotein sequence of jgi.p|Nanoce1779_2|82445 >mRNA_6130-protein ID=mRNA_6130-protein|Name=jgi.p|Nanoce1779_2|82445|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MSGKFKPVRAFVTRLHGAVRAERPNEERIHDVYQESEEVAKEFNSDPWPK
AEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALF
TALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRAS
ALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSK
GGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDAL
AVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIK
TFVSVLDVYFKHMESIKQQQRALQQQQQQQQQGQPVQPPAKNADDLAAGK
LVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIV
TLFVLSAPKFISPATDYEAAVSAMGTAGPGGAGGRGGGGGAGRSGTYGGL
QRIVFAEEVRQMLELRKLRDYLRLYSTIGLGKLSAFTGQDPEDIRRELVQ
YKHKLLQLEASTGSSVQPSLDFHYYLDGDMVHVDAGERENRQEVSKHFQY
QIRKLENLARTLRR* back to topmRNA from alignment at scaffold_14:583253..585621+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6130 ID=mRNA_6130|Name=jgi.p|Nanoce1779_2|82445|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp|location=Sequence derived from alignment at scaffold_14:583253..585621+ (Nannochloropsis oceanica)
ATACCACAGCGCCATCGTCATCGTGGTATCTAGGGCCCGCAGCGGCAGCC
AGAATGAGTGGTAAATTCAAGGCAAGTGAAGTGATGGTTTGGTTGAGGGA
GGTGGTTAGTGGGCAATAAAGGTGTGGGTTGAGTACGCGTGCCTGTTACT
GGTCTTTAACGATATCATCATTCCATGAGAGAGTATGTGGATGGACGAGA
ATCATTAGAGAAGGGCTACTAATGTTAGGTTGTCGCTATACCGCGTGTGG
CGGCGCAGTGGCATGATGATGAAATGTGATGATGGAGGGCTCCCCGATGA
CTGGCCTGGTTCTTGTTGCACTCCTGAGAGCCCTACGCCTTGATGTCACA
ATTACAGCCAGTAAGGGTGAGGAGAATAGAAAAGGCGCGTATCATCGCTT
GGAACTGCCTTGTCGTCTGACCTTTGACCTTTTCATCTAGCCACGCCCCA
TACAACCGCATTTTAACATGGAACAACCCTTATCCTCTTCCCTCTCTCCA
CGCACAGGCGTTTGTAACCCGCCTCCATGGCGCGGTCCGGGCGGAGCGTC
CGAATGAAGAGCGGATCCACGATGTGTACCAAGAGTCAGAGGAAGTGGCC
AAGGAGTTTAACAGCGACCCGTGGCCCAAGGCCGAGGCGGTGGCAAGCCT
TGTTCAGGGAGATAGAGTCTTCCTTTTGCTTTACACGGAGATGGCGTTTC
AAGCATTTTTTAAGAATAAGAATGTGAAGGCTACCATGGGTGACCGTGTG
GGGTCCTGGGAGAATTACAGCGCGCTCTTCACGGCGCTGATCCAAGACGA
GGATGGACAGGCCATGACGGAGGCAGCGAAGGCGCATGGGGCTGAAGTGA
TGATTACTGGCAAGTGGGCTTTTGACATCATTTATGAGTTTGTATATCAA
TTTCAGGAGGCCTGCCAATACCGCGCTTCCGCCCTTCAGAGCGCCACAAA
TGAGGCCGAGCTCCAGACGGTGCTGGAGCACAAGGACGTGTGGACCGTGG
ACAAGGTGTTCAATTTCCTCCACCAGCTTGTCAAGGTCTCTAAGGTACGA
GAGGTCCTGGAATCCGCGGCGCTCAGCAAGGGTGGACTGGATGGGGAAAC
TGTCAACAGTGGAGGGGCGCCTGTGCCGCTGGTGACGTACCCGAGTAAGC
TCCATTATTTGCTTGGGTACTTTGCGTTGGTGGGCTTGAATCGATTGGAA
TGCTTGTTGGGAGATTTTCAGGATGCGTTGGCGGTGGCAGAGCCGGTGAT
GGAGGAGAGTCGGTCGGGAAATGCAGGGGCGGGATTGTTATTGTCCTCCA
GCATAATTGCGCAGGTCTCATTGCATTATCACATTGGCTTGAGCTACCTG
ATGATCCGAAAATACCAGGAGGCGATCAAGACCTTCGTCTCGGTGCTGGA
CGTCTACTTTAAGCACATGGAATCTATCAAGCAGCAACAACGCGCGCTTC
AGCAGCAGCAGCAGCAGCAGCAGCAAGGCCAGCCTGTCCAGCCGCCGGCC
AAGAACGCGGACGACCTCGCAGCAGGCAAGCTCGTGGACAAGGTAGCAGC
GATGCTCTTGATCGTGCACCATCTCTGCCCGGGGCAGCACATCCCTGAGA
ATATTCGTGGGCATCTGATGGGTGAAAAAATGAAGGACAAGCTTCGCCAG
GTGCAGTCGGGCGACGTGGACGCCATCGTCACCCTGTTTGTCCTCTCCGC
CCCCAAATTTATCAGCCCTGCCACGGACTACGAAGCAGCCGTGTCTGCCA
TGGGTACTGCGGGGCCGGGTGGGGCGGGCGGCAGGGGGGGAGGAGGGGGA
GCAGGCCGGTCAGGGACTTATGGAGGGTTGCAGCGGATTGTGTTTGCGGA
GGAGGTGCGTCAGATGCTGGAGTTGAGGAAGCTGAGGGATTACCTGCGGT
TGTACTCGACGATTGGACTTGGGAAGCTATCGGCTTTTACGGGGCAGGAC
CCGGAGGACATTCGGAGGGAGTTGGTGCAGTACAAGCATAAGCTGCTGCA
GTTGGAGGCGAGTACGGGCAGCTCTGTGCAGCCGAGTTTGGATTTCCATT
ATTATCTAGATGGGGACATGGTCCATGTTGATGCGGGCGAGCGTGAGAAT
AGACAGGAGGTGAGCAAGCACTTCCAGTATCAGATTCGGAAGTTGGAGAA
TCTGGCAAGGACGTTGCGGCGATAGCCGAAAGACGGGAGAAGAGAGGAGG
AGGAGGAGGGAGAAGGGGTGGGCGGAGATGAAGGATGAGGGAAAGAGGTG
TGTTTATCTGTGCAAGGATAAGCTAGCAGGTGCACACGTTGTGGTAGATG
TCAAGACAGGTCAAAGCGAAATGAAGAAAGGACATGTTGAAACATCGCGA
GATCGCTGTGAGCGTCATA back to topCoding sequence (CDS) from alignment at scaffold_14:583253..585621+ >mRNA_6130 ID=mRNA_6130|Name=jgi.p|Nanoce1779_2|82445|organism=Nannochloropsis oceanica|type=CDS|length=5085bp|location=Sequence derived from alignment at scaffold_14:583253..585621+ (Nannochloropsis oceanica)
ATGAGTGGTAAATTCAAGCCAGTAAGGGCGTTTGTAACCCGCCTCCATGG
CGCGGTCCGGGCGGAGCGTCCGAATGAAGAGCGGATCCACGATGTGTACC
AAGAGTCAGAGGAAGTGGCCAAGGAGTTTAACAGCGACCCGTGGCCCAAG
GCCGAGGCGGTGGCAAGCCTTGTTCAGGGAGATAGAGTCTTCCTTTTGCT
TTACACGGAGATGGCGTTTCAAGCATTTTTTAAGAATAAGAATGTGAAGG
CTACCATGGGTGACCGTGTGGGGTCCTGGGAGAATTACAGCGCGCTCTTC
ACGGCGCTGATCCAAGACGAGGATGGACAGGCCATGACGGAGGCAGCGAA
GGCGCATGGGGCTGAAGTGATGATTACTGGCAAGTGGGCTTTTGACATCA
TTTATGAGTTTGTATATCAATTTCAGGAGGCCTGCCAATACCGCGCTTCC
GCCCTTCAGAGCGCCACAAATGAGGCCGAGCTCCAGACGGTGCTGGAGCA
CAAGGACGTGTGGACCGTGGACAAGGTGTTCAATTTCCTCCACCAGCTTG
TCAAGGTCTCTAAGGTACGAGAGGTCCTGGAATCCGCGGCGCTCAGCAAG
GGTGGACTGGATGGGGAAACTGTCAACAGTGGAGGGGCGCCTGTGCCGCT
GGTGACGTACCCGAGTAAGCTCCATTATTTGCTTGGGTACTTTGCGTTGG
TGGGCTTGAATCGATTGGAATGCTTGTTGGGAGATTTTCAGGATGCGTTG
GCGGTGGCAGAGCCGGTGATGGAGGAGAGTCGGTCGGGAAATGCAGGGGC
GGGATTGTTATTGTCCTCCAGCATAATTGCGCAGGTCTCATTGCATTATC
ACATTGGCTTGAGCTACCTGATGATCCGAAAATACCAGGAGGCGATCAAG
ACCTTCGTCTCGGTGCTGGACGTCTACTTTAAGCACATGGAATCTATCAA
GCAGCAACAACGCGCGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAAGGCC
AGCCTGTCCAGCCGCCGGCCAAGAACGCGGACGACCTCGCAGCAGGCAAG
CTCGTGGACAAGGTAGCAGCGATGCTCTTGATCGTGCACCATCTCTGCCC
GGGGCAGCACATCCCTGAGAATATTCGTGGGCATCTGATGGGTGAAAAAA
TGAAGGACAAGCTTCGCCAGGTGCAGTCGGGCGACGTGGACGCCATCGTC
ACCCTGTTTGTCCTCTCCGCCCCCAAATTTATCAGCCCTGCCACGGACTA
CGAAGCAGCCGTGTCTGCCATGGGTACTGCGGGGCCGGGTGGGGCGGGCG
GCAGGGGGGGAGGAGGGGGAGCAGGCCGGTCAGGGACTTATGGAGGGTTG
CAGCGGATTGTGTTTGCGGAGGAGGTGCGTCAGATGCTGGAGTTGAGGAA
GCTGAGGGATTACCTGCGGTTGTACTCGACGATTGGACTTGGGAAGCTAT
CGGCTTTTACGGGGCAGGACCCGGAGGACATTCGGAGGGAGTTGGTGCAG
TACAAGCATAAGCTGCTGCAGTTGGAGGCGAGTACGGGCAGCTCTGTGCA
GCCGAGTTTGGATTTCCATTATTATCTAGATGGGGACATGGTCCATGTTG
ATGCGGGCGAGCGTGAGAATAGACAGGAGGTGAGCAAGCACTTCCAGTAT
CAGATTCGGAAGTTGGAGAATCTGGCAAGGACGTTGCGGCGATAGATGAG
TGGTAAATTCAAGCCAGTAAGGGCGTTTGTAACCCGCCTCCATGGCGCGG
TCCGGGCGGAGCGTCCGAATGAAGAGCGGATCCACGATGTGTACCAAGAG
TCAGAGGAAGTGGCCAAGGAGTTTAACAGCGACCCGTGGCCCAAGGCCGA
GGCGGTGGCAAGCCTTGTTCAGGGAGATAGAGTCTTCCTTTTGCTTTACA
CGGAGATGGCGTTTCAAGCATTTTTTAAGAATAAGAATGTGAAGGCTACC
ATGGGTGACCGTGTGGGGTCCTGGGAGAATTACAGCGCGCTCTTCACGGC
GCTGATCCAAGACGAGGATGGACAGGCCATGACGGAGGCAGCGAAGGCGC
ATGGGGCTGAAGTGATGATTACTGGCAAGTGGGCTTTTGACATCATTTAT
GAGTTTGTATATCAATTTCAGGAGGCCTGCCAATACCGCGCTTCCGCCCT
TCAGAGCGCCACAAATGAGGCCGAGCTCCAGACGGTGCTGGAGCACAAGG
ACGTGTGGACCGTGGACAAGGTGTTCAATTTCCTCCACCAGCTTGTCAAG
GTCTCTAAGGTACGAGAGGTCCTGGAATCCGCGGCGCTCAGCAAGGGTGG
ACTGGATGGGGAAACTGTCAACAGTGGAGGGGCGCCTGTGCCGCTGGTGA
CGTACCCGAGTAAGCTCCATTATTTGCTTGGGTACTTTGCGTTGGTGGGC
TTGAATCGATTGGAATGCTTGTTGGGAGATTTTCAGGATGCGTTGGCGGT
GGCAGAGCCGGTGATGGAGGAGAGTCGGTCGGGAAATGCAGGGGCGGGAT
TGTTATTGTCCTCCAGCATAATTGCGCAGGTCTCATTGCATTATCACATT
GGCTTGAGCTACCTGATGATCCGAAAATACCAGGAGGCGATCAAGACCTT
CGTCTCGGTGCTGGACGTCTACTTTAAGCACATGGAATCTATCAAGCAGC
AACAACGCGCGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAAGGCCAGCCT
GTCCAGCCGCCGGCCAAGAACGCGGACGACCTCGCAGCAGGCAAGCTCGT
GGACAAGGTAGCAGCGATGCTCTTGATCGTGCACCATCTCTGCCCGGGGC
AGCACATCCCTGAGAATATTCGTGGGCATCTGATGGGTGAAAAAATGAAG
GACAAGCTTCGCCAGGTGCAGTCGGGCGACGTGGACGCCATCGTCACCCT
GTTTGTCCTCTCCGCCCCCAAATTTATCAGCCCTGCCACGGACTACGAAG
CAGCCGTGTCTGCCATGGGTACTGCGGGGCCGGGTGGGGCGGGCGGCAGG
GGGGGAGGAGGGGGAGCAGGCCGGTCAGGGACTTATGGAGGGTTGCAGCG
GATTGTGTTTGCGGAGGAGGTGCGTCAGATGCTGGAGTTGAGGAAGCTGA
GGGATTACCTGCGGTTGTACTCGACGATTGGACTTGGGAAGCTATCGGCT
TTTACGGGGCAGGACCCGGAGGACATTCGGAGGGAGTTGGTGCAGTACAA
GCATAAGCTGCTGCAGTTGGAGGCGAGTACGGGCAGCTCTGTGCAGCCGA
GTTTGGATTTCCATTATTATCTAGATGGGGACATGGTCCATGTTGATGCG
GGCGAGCGTGAGAATAGACAGGAGGTGAGCAAGCACTTCCAGTATCAGAT
TCGGAAGTTGGAGAATCTGGCAAGGACGTTGCGGCGATAGATGAGTGGTA
AATTCAAGCCAGTAAGGGCGTTTGTAACCCGCCTCCATGGCGCGGTCCGG
GCGGAGCGTCCGAATGAAGAGCGGATCCACGATGTGTACCAAGAGTCAGA
GGAAGTGGCCAAGGAGTTTAACAGCGACCCGTGGCCCAAGGCCGAGGCGG
TGGCAAGCCTTGTTCAGGGAGATAGAGTCTTCCTTTTGCTTTACACGGAG
ATGGCGTTTCAAGCATTTTTTAAGAATAAGAATGTGAAGGCTACCATGGG
TGACCGTGTGGGGTCCTGGGAGAATTACAGCGCGCTCTTCACGGCGCTGA
TCCAAGACGAGGATGGACAGGCCATGACGGAGGCAGCGAAGGCGCATGGG
GCTGAAGTGATGATTACTGGCAAGTGGGCTTTTGACATCATTTATGAGTT
TGTATATCAATTTCAGGAGGCCTGCCAATACCGCGCTTCCGCCCTTCAGA
GCGCCACAAATGAGGCCGAGCTCCAGACGGTGCTGGAGCACAAGGACGTG
TGGACCGTGGACAAGGTGTTCAATTTCCTCCACCAGCTTGTCAAGGTCTC
TAAGGTACGAGAGGTCCTGGAATCCGCGGCGCTCAGCAAGGGTGGACTGG
ATGGGGAAACTGTCAACAGTGGAGGGGCGCCTGTGCCGCTGGTGACGTAC
CCGAGTAAGCTCCATTATTTGCTTGGGTACTTTGCGTTGGTGGGCTTGAA
TCGATTGGAATGCTTGTTGGGAGATTTTCAGGATGCGTTGGCGGTGGCAG
AGCCGGTGATGGAGGAGAGTCGGTCGGGAAATGCAGGGGCGGGATTGTTA
TTGTCCTCCAGCATAATTGCGCAGGTCTCATTGCATTATCACATTGGCTT
GAGCTACCTGATGATCCGAAAATACCAGGAGGCGATCAAGACCTTCGTCT
CGGTGCTGGACGTCTACTTTAAGCACATGGAATCTATCAAGCAGCAACAA
CGCGCGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAAGGCCAGCCTGTCCA
GCCGCCGGCCAAGAACGCGGACGACCTCGCAGCAGGCAAGCTCGTGGACA
AGGTAGCAGCGATGCTCTTGATCGTGCACCATCTCTGCCCGGGGCAGCAC
ATCCCTGAGAATATTCGTGGGCATCTGATGGGTGAAAAAATGAAGGACAA
GCTTCGCCAGGTGCAGTCGGGCGACGTGGACGCCATCGTCACCCTGTTTG
TCCTCTCCGCCCCCAAATTTATCAGCCCTGCCACGGACTACGAAGCAGCC
GTGTCTGCCATGGGTACTGCGGGGCCGGGTGGGGCGGGCGGCAGGGGGGG
AGGAGGGGGAGCAGGCCGGTCAGGGACTTATGGAGGGTTGCAGCGGATTG
TGTTTGCGGAGGAGGTGCGTCAGATGCTGGAGTTGAGGAAGCTGAGGGAT
TACCTGCGGTTGTACTCGACGATTGGACTTGGGAAGCTATCGGCTTTTAC
GGGGCAGGACCCGGAGGACATTCGGAGGGAGTTGGTGCAGTACAAGCATA
AGCTGCTGCAGTTGGAGGCGAGTACGGGCAGCTCTGTGCAGCCGAGTTTG
GATTTCCATTATTATCTAGATGGGGACATGGTCCATGTTGATGCGGGCGA
GCGTGAGAATAGACAGGAGGTGAGCAAGCACTTCCAGTATCAGATTCGGA
AGTTGGAGAATCTGGCAAGGACGTTGCGGCGATAG back to top
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