jgi.p|Nanoce1779_2|137694, mRNA_613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|137694
Unique NamemRNA_613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_2:6432..7826 -

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Properties
Property NameValue
TranscriptId137780
TrackFilteredModels2
ProteinId137694
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:6432..7826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|137694gene_613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|137694mRNA_613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_613CDS_613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_613 ID=mRNA_613|Name=jgi.p|Nanoce1779_2|137694|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
GGGAGGGGGACGGGGGGAGGAATCTTCATAACCATTACTCTTCGTAGTCA
TTGCAATCGTTCTGACCCTTTGGGGGTTCTTTTTAATCATTATTCAGGCT
CTGCAACCCAAGTCGGACATGGTCAGAGCTCAGGATTTCGAGGCTTTCTC
CCACTGGTGGGTTCCGATGATGAGCACCTTAAAGCAACTTGCCAGGGAAT
GGTTAATCGAAACTCCCACGCCGCTTATCATGGGCATCATCGGCCGGAAG
GAGGCCGAGGGCTTGTTGAGGAAGAAGCCAATAGGGACATTTCTTATCCG
CTTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCGTCGTCGCCC
CACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCCCTCCCTCCC
GCCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCGGGTATCCGA
GATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGATATGAAAAAT
TGGAGGACCTGATCAATGACGTGGCCTCGCTCACTCACTTGTACCCGGAT
ACCCCCAAAGAGAGGGCACTGCAAGCCCTCCAGCGAGAAAACGCCCCAGA
TGATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAGA
CAGATGCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGAGAAAGAACGA
GGAGGAGGACGGCGAGGAGGAGGACGACGACGAGAAGGACGAAGGCGAGG
AAGAGGGGGGGCAGTCAATCTACACTTCCACCTATCAGAGGGGAAACAAA
TGTCAAGTTCAAAGCAATTAAATCAAAAGCAAAATGAAAATATAGCAATC
AAGGCACATGTAGTGGG
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protein sequence of jgi.p|Nanoce1779_2|137694

>mRNA_613-protein ID=mRNA_613-protein|Name=jgi.p|Nanoce1779_2|137694|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLL
RKKPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSK
LIQHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERA
LQALQRENAPDDGATAAAAAAAGTNAETDADARAAVGQA*
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mRNA from alignment at scaffold_2:6432..7826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_613 ID=mRNA_613|Name=jgi.p|Nanoce1779_2|137694|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at scaffold_2:6432..7826- (Nannochloropsis oceanica)
GGGAGGGGGACGGGGGGAGGAATCTTCATAACCATTACTCTTCGTAGTCA
TTGCAATCGTTCTGACCCTTTGGGGGTTCTTTTTAATCATTATTCAGGCT
CTGCAACCCAAGTCGGACATGGTCAGAGCTCAGGATTTCGAGGCTTTCTC
CCACTGGTAAAGAGGGAAGGAAGGAGGGGGGGGGGGAAGGGAAGGAGGGG
GGACGCCCACGCAATTTCACTCACGTCCGTACCTGCAACTATTACCATCT
GTTCCTCCCCTCCCCCCCTTCCCTCTACCTTCCAGGTGGGTTCCGATGAT
GAGCACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGC
CGCTTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGG
AAGAAGCCAATAGGTGAGGAAGACGGGCGAATGAGAGGGAGGCAGAGGAG
GATGGAGGGAAGGAGGGGGCGAGGGGGGAAATGGGAGGAAGGTAGCGACC
CTCATGCGTGCATTTACTCGCTCCGATCCTCATACATACATGCACTCCGT
CCGACCACAATGCATTCATTCATCCGATCGTCATGCACGCATTTACCCGT
TGCAATTCTCATGCGTATATTCACTCACTCCTTCCTTTCTCCTTTTCAAC
AGGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCCA
TCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTCC
CCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACTG
CCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGAA
GAAGACGATATGAAAAATTGGAGGTGGGGTAGGAAGGGTGGGAGGGTGGG
TGAGTGGGAGGGAGGGAGGAAAGTTGCTGCTGTGAAATGAGAGGAGAATG
AATAGGAGGGATCTTTCGTCGAGGTTCTGCGTCTGACCATAACCTCCTCC
TTCCTTCCCTCCTCCCTTCCTCCCTCTCCTCAGGACCTGATCAATGACGT
GGCCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGC
AAGCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCT
GCTGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGC
CGTTGGACAGGCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAG
GACGACGACGAGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTA
CACTTCCACCTATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAA
TCAAAAGCAAAATGAAAATATAGCAATCAAGGCACATGTAGTGGG
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Coding sequence (CDS) from alignment at scaffold_2:6432..7826-

>mRNA_613 ID=mRNA_613|Name=jgi.p|Nanoce1779_2|137694|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_2:6432..7826- (Nannochloropsis oceanica)
GACCTGATCAATGACGTGGCCTCGCTCACTCACTTGTACCCGGATACCCC
CAAAGAGAGGGCACTGCAAGCCCTCCAGCGAGAAAACGCCCCAGATGATG
GTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAGACAGAT
GCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGGACATTTCTTATCCGC
TTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCGTCGTCGCCCC
ACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCCCTCCCTCCCG
CCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCGGGTATCCGAG
ATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGATATGAAAAATT
GGAGGTGGGTTCCGATGATGAGCACCTTAAAGCAACTTGCCAGGGAATGG
TTAATCGAAACTCCCACGCCGCTTATCATGGGCATCATCGGCCGGAAGGA
GGCCGAGGGCTTGTTGAGGAAGAAGCCAATAGATGGTCAGAGCTCAGGAT
TTCGAGGCTTTCTCCCACTGGACCTGATCAATGACGTGGCCTCGCTCACT
CACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAAGCCCTCCAGCG
AGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTG
GGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCGTTGGACAGGCA
TGAGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCC
ATCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTC
CCCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACT
GCCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGA
AGAAGACGATATGAAAAATTGGAGGTGGGTTCCGATGATGAGCACCTTAA
AGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGCTTATCATG
GGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAGAAGCCAAT
AGATGGTCAGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGACCTGATCA
ATGACGTGGCCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGG
GCACTGCAAGCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGC
TGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGC
GGGCAGCCGTTGGACAGGCATGAGGACATTTCTTATCCGCTTCTCTACCA
CCCACCTGGGCCTCCTCGCCATCTCCTTCGTCGTCGCCCCACCTCCCTCC
CCCTCCTCCGCCGTTTCCTCCCCTCCCTCCCTCCCTCCCGCCCTTCCTCC
CTCGAAGCTGATCCAGCACTGCCTGGTCCGGGTATCCGAGATGGGCTGTG
AATTGTTCATGGAACCGGGAAGAAGACGATATGAAAAATTGGAGGTGGGT
TCCGATGATGAGCACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAA
CTCCCACGCCGCTTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGC
TTGTTGAGGAAGAAGCCAATAGATGGTCAGAGCTCAGGATTTCGAGGCTT
TCTCCCACTGGACCTGATCAATGACGTGGCCTCGCTCACTCACTTGTACC
CGGATACCCCCAAAGAGAGGGCACTGCAAGCCCTCCAGCGAGAAAACGCC
CCAGATGATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGC
TGAGACAGATGCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGGACATT
TCTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCG
TCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCC
CTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCG
GGTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGAT
ATGAAAAATTGGAGGTGGGTTCCGATGATGAGCACCTTAAAGCAACTTGC
CAGGGAATGGTTAATCGAAACTCCCACGCCGCTTATCATGGGCATCATCG
GCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAGAAGCCAATAGATGGTCAG
AGCTCAGGATTTCGAGGCTTTCTCCCACTG
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Synonyms
Publications