jgi.p|Nanoce1779_2|593832, mRNA_6128 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593832
Unique NamemRNA_6128
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length966
Alignment locationscaffold_14:579233..580475 -

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Properties
Property NameValue
TranscriptId593918
TrackFilteredModels2
ProteinId593832
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:579233..580475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593832gene_6128Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593832mRNA_6128-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6128CDS_6128Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6128 ID=mRNA_6128|Name=jgi.p|Nanoce1779_2|593832|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
AGCCATGAGCGGCCACTACGTGCAGCAGGCGCAGGCCTTTGTGCTGCGGT
TGCCGGAGCACCTAGAGGAGAGCGTACGAGCCCGGCTCAAGACGGGAGGC
ATGGACGGGGTGCAACTAACAGCCAGGCCGGACGGCTTCGAGGGTTTACC
TGAGTACGCAGTGCAGAGGGGAGGCTTGTTGGAGCTGAGGCTTGGGGCAC
GAAAGGCCACCGAAGACGTGCCCGATGGAGGAGAATATGACGACGAAGAG
GAGGAGCATGAACCACGAGTCTTCCCCGCACGTTTGGTGAATTTGCCTTG
TGTGGTGGAGATGCACAAGACGGTGGATTACGTAACGCTCTTTAAGAGCG
GGGATGTTGGGCAAATGGTGGTAGTCTACGCGAACGAAACCGAGCTCCTC
GAAGACCTCCGACGCGAAGAGGAAGAACGGGACAAGATTCGTCAAAAGGG
AGGAAGGGACGGACAGGCCGATGCTGAATTGCGTGTCAGGCAGCAGCTCA
ACTACTACCACTCTGGCCTTACCCCACCCACTACCAACATCGTCCGACGG
CGCTTCGCCGAGACCCGCCTGCACGGCCCGTACCCCCCCGCCGTCGTCGC
CAAGGTCCAACGCGAATTGGCTGCGCACGTGGCAGCACTGGAGGAGAAGA
GGGAGGTGGCTGAAGTGGTGGAAGATGTGGTTGAATTCGAAGACTATATG
GCGGACATGCACGGCCAGCCTGTCACCATTGCAGAGGACTCGGCCCAGTG
GCTCGAGCACCCCGAGCTACTCATCCATCGACCAGTCGTCCTTGCCCCCG
ATGACCCAGCTTTTTTTTCAGTGGCCGCTGCTGTCTCCGCGGCTGCAACT
GGTGCTGCTGCTCCTGCTACCGGCAATGATGGGGCTCACTTGGTTGAGGC
TGCTGCTCTTCAGCAGGCCACGTCGGTGATGGCGGGGAAAGGCGGACGGC
GCGGTGGTGGAGGGGG
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protein sequence of jgi.p|Nanoce1779_2|593832

>mRNA_6128-protein ID=mRNA_6128-protein|Name=jgi.p|Nanoce1779_2|593832|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MLNCVSGSSSTTTTLALPHPLPTSSDGASPRPACTARTPPPSSPRSNANW
LRTWQHWRRRGRWLKWWKMWLNSKTIWRTCTASLSPLQRTRPSGSSTPSY
SSIDQSSLPPMTQLFFQWPLLSPRLQLVLLLLLPAMMGLTWLRLLLFSRP
RR*
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mRNA from alignment at scaffold_14:579233..580475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6128 ID=mRNA_6128|Name=jgi.p|Nanoce1779_2|593832|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_14:579233..580475- (Nannochloropsis oceanica)
AGCCATGAGCGGCCACTACGTGCAGCAGGCGCAGGCCTTTGTGCTGCGGT
TGCCGGAGCACCTAGAGGAGAGCGTACGAGCCCGGCTCAAGACGGGAGGC
ATGGACGGGGTGCAACTAACAGCCAGGCCGGACGGCTTCGAGGGTTTACG
TGAGTGTTGTAGGGAAGGGAGGGGGGCGGGAGGGTTGTGTCCATCGGCTT
AGGGAGGTACTGTTTCCGGAGGGCTGAGTTGAACGTGGAGGGAGCTGAGT
GTGGATCGATAAAGCCCTTCCTGTGTCTTCCAAACCCCTACCCCTCCCTC
GCTACTCCTTCGTCTTTAGGTTTGATGACAGGCGTTCTTATTTGCGTGTC
AACCATTAAGTTCATATTCATCTACAATCTTCATCGCTAATCGACAATTT
ACTTTACTGATATGCACACAACACAGCTGAGTACGCAGTGCAGAGGGGAG
GCTTGTTGGAGCTGAGGCTTGGGGCACGAAAGGCCACCGAAGACGTGCCC
GATGGAGGAGAATATGACGACGAAGAGGAGGAGCATGAACCACGAGTCTT
CCCCGCACGTTTGGTGAATTTGCCTTGTGTGGTGGAGATGCACAAGACGG
TGGATTACGTAACGCTCTTTAAGAGCGGGGATGTTGGGCAAATGGTGGTA
GTCTACGCGAACGAAACCGAGCTCCTCGAAGACCTCCGACGCGAAGAGGA
AGAACGGGACAAGATTCGTCAAAAGGGAGGAAGGGACGGACAGGCCGATG
CTGAATTGCGTGTCAGGCAGCAGCTCAACTACTACCACTCTGGCCTTACC
CCACCCACTACCAACATCGTCCGACGGCGCTTCGCCGAGACCCGCCTGCA
CGGCCCGTACCCCCCCGCCGTCGTCGCCAAGGTCCAACGCGAATTGGCTG
CGCACGTGGCAGCACTGGAGGAGAAGAGGGAGGTGGCTGAAGTGGTGGAA
GATGTGGTTGAATTCGAAGACTATATGGCGGACATGCACGGCCAGCCTGT
CACCATTGCAGAGGACTCGGCCCAGTGGCTCGAGCACCCCGAGCTACTCA
TCCATCGACCAGTCGTCCTTGCCCCCGATGACCCAGCTTTTTTTTCAGTG
GCCGCTGCTGTCTCCGCGGCTGCAACTGGTGCTGCTGCTCCTGCTACCGG
CAATGATGGGGCTCACTTGGTTGAGGCTGCTGCTCTTCAGCAGGCCACGT
CGGTGATGGCGGGGAAAGGCGGACGGCGCGGTGGTGGAGGGGG
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Coding sequence (CDS) from alignment at scaffold_14:579233..580475-

>mRNA_6128 ID=mRNA_6128|Name=jgi.p|Nanoce1779_2|593832|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_14:579233..580475- (Nannochloropsis oceanica)
ATGCTGAATTGCGTGTCAGGCAGCAGCTCAACTACTACCACTCTGGCCTT
ACCCCACCCACTACCAACATCGTCCGACGGCGCTTCGCCGAGACCCGCCT
GCACGGCCCGTACCCCCCCGCCGTCGTCGCCAAGGTCCAACGCGAATTGG
CTGCGCACGTGGCAGCACTGGAGGAGAAGAGGGAGGTGGCTGAAGTGGTG
GAAGATGTGGTTGAATTCGAAGACTATATGGCGGACATGCACGGCCAGCC
TGTCACCATTGCAGAGGACTCGGCCCAGTGGCTCGAGCACCCCGAGCTAC
TCATCCATCGACCAGTCGTCCTTGCCCCCGATGACCCAGCTTTTTTTTCA
GTGGCCGCTGCTGTCTCCGCGGCTGCAACTGGTGCTGCTGCTCCTGCTAC
CGGCAATGATGGGGCTCACTTGGTTGAGGCTGCTGCTCTTCAGCAGGCCA
CGTCGGTGA
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Synonyms
Publications