jgi.p|Nanoce1779_2|82305, mRNA_6124 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|82305
Unique NamemRNA_6124
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_14:571558..572890 +

Link to JBrowse

Properties
Property NameValue
TranscriptId82391
TrackFilteredModels2
ProteinId82305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:571558..572890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82305gene_6124Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82305mRNA_6124-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6124CDS_6124Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6124 ID=mRNA_6124|Name=jgi.p|Nanoce1779_2|82305|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
AGAAGTCGGGAGACATCTCGGCGTCTCGCGCCGCCCCTATGAATCCCGGT
GAAAGGCCCTACTTCAAAATCATCCTTTTCTCCTCGTTTGTTTTGACCAT
TAATGCAAGCTTCATCAATCTCATAACTCTCCACTCGGCCAAGGCCATGG
CAAGTGTGCATGTCACCGGTATGATTGCACACATTTCAAACTTTGCTGCG
ACAAGGGACCTGGCCCCTCTTTACGAATACATAGGCACTTACTTGTGCTT
TGTAGCGGGTTCATTTACCGCGGGAGTCGTCGTTACTCAAGAAACATTCT
ATATGGGTCGAAATTACGGGCGTGCATTATTCCTAATCGCAGCCGTGGAA
GCCGCTGCCCTGCTGACGGAGGCGGCGTATCCAGACACTATTTTTTTTAT
TTGGCTTTGCGCTTATTCGGCAGGCCTTCAAAATGGATTGACGTCGAAGT
TCTCTGGAAACGCCGTGCGAACTACACACCTCACGGGCGCCTCGACAGAT
TTCGGTATTGCCATTGGCCACATTATTAAAGGCAGGAAGGGGGAGTGGTG
GAAGGTGAAGCTGCACGGAATCGCTGTGGTTGGGTTTTTCATTGGCGGCA
TTGCCGGTTTCTTCGCTTTTGAGCACTTCGGTCATAATGCGTTACTGTTC
AATATGGGTATGACAACATCTCTAGCGATTGCCCACACCTTCTACATCGC
TTATCACGAGCGCCTCTCGCCAATTTTCGTCCTCGAGTCCAGCCGCGACA
TCATAATGCACAAGCATCGCGTCGCGAATAATTTGGATTTGGGACGTCAG
AGCTCTTTCAATCCCGGCCCCTCCCCCTCGGCCTCCTCCTTGGCAGAGCT
CACGCCTACGTCACGGGCAAAGCGCTTGGCGGGTGCCCGGGCCTCATCCT
GCGTGTCCATGCTCCCCCCTGCTTCCATGGCATCCCGACTCGAACGACAC
TTTCCCAAGAACGAGCCAGGCGAAAACGTTGACGACTACAAAGCCTAACT
CAAGAAAGAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|82305

>mRNA_6124-protein ID=mRNA_6124-protein|Name=jgi.p|Nanoce1779_2|82305|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MNPGERPYFKIILFSSFVLTINASFINLITLHSAKAMASVHVTGMIAHIS
NFAATRDLAPLYEYIGTYLCFVAGSFTAGVVVTQETFYMGRNYGRALFLI
AAVEAAALLTEAAYPDTIFFIWLCAYSAGLQNGLTSKFSGNAVRTTHLTG
ASTDFGIAIGHIIKGRKGEWWKVKLHGIAVVGFFIGGIAGFFAFEHFGHN
ALLFNMGMTTSLAIAHTFYIAYHERLSPIFVLESSRDIIMHKHRVANNLD
LGRQSSFNPGPSPSASSLAELTPTSRAKRLAGARASSCVSMLPPASMASR
LERHFPKNEPGENVDDYKA*
back to top

mRNA from alignment at scaffold_14:571558..572890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6124 ID=mRNA_6124|Name=jgi.p|Nanoce1779_2|82305|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp|location=Sequence derived from alignment at scaffold_14:571558..572890+ (Nannochloropsis oceanica)
AGAAGTCGGGAGACATCTCGGCGTCTCGCGCCGCCCCTATGAATCCCGGT
GAAAGGCCCTACTTCAAAATCATCCTTTTCTCCTCGTTTGTTTTGACCAT
TAATGCAAGCTTCATCAATCTCATAACTCTCCACTCGGCCAAGGCCATGG
CAAGTGTGCATGTCACCGGTATGATTGCACACATTTCAAACTTTGCTGCG
ACAAGGGACCTGGCCCCTCTTTACGAGTAAGTATCTAAATGTGCTCTCCC
CATGCCCCTCTGCTTCTTTCAAGATTCACACACCACCCACGTCTTACCAC
CCTCCTTTTCCTCCTACAGATACATAGGCACTTACTTGTGCTTTGTAGCG
GGTTCATTTACCGCGGGAGTCGTCGTTACTCAAGAAACATTCTATATGGG
TCGAAATTACGGGCGTGCATTATTCCTAATCGCAGCCGTGGAAGCCGCTG
CCCTGCTGACGGAGGCGGCGTATCCAGACACTATTTTTTTTATTTGGCTT
TGCGCTTATTCGGCAGGCCTTCAAAATGGATTGACGTCGAAGTTCTCTGG
AAACGCCGTGCGAACTACACACCTCACGGGCGCCTCGACAGATTTCGGTG
CGTGAAGCAGGGTTCGAGCAGCGAATCGTCTTTCTGTCCTAGAGAGTTCT
CTGAGTCGGAGTACGAGAGAAAGGACTGGGTGAGACGGCAGGGGCGGAAT
TCTCATTAACATTTTCTATTTTTAGAATTCAAATTTTCACAAAGGTGTAG
GAGAAAGTTTTGGTGTTGCTGGTTGAAATGGTCATGCGATGAGACGAATA
CCCATACCCTTTCTCCCTACTGCCAGGTATTGCCATTGGCCACATTATTA
AAGGCAGGAAGGGGGAGTGGTGGAAGGTGAAGCTGCACGGAATCGCTGTG
GTTGGGTTTTTCATTGGCGGCATTGCCGGTTTCTTCGCTTTTGAGCACTT
CGGTCATAATGCGTTACTGTTCAATATGGGTATGACAACATCTCTAGCGA
TTGCCCACACCTTCTACATCGCTTATCACGAGCGCCTCTCGCCAATTTTC
GTCCTCGAGTCCAGCCGCGACATCATAATGCACAAGCATCGCGTCGCGAA
TAATTTGGATTTGGGACGTCAGAGCTCTTTCAATCCCGGCCCCTCCCCCT
CGGCCTCCTCCTTGGCAGAGCTCACGCCTACGTCACGGGCAAAGCGCTTG
GCGGGTGCCCGGGCCTCATCCTGCGTGTCCATGCTCCCCCCTGCTTCCAT
GGCATCCCGACTCGAACGACACTTTCCCAAGAACGAGCCAGGCGAAAACG
TTGACGACTACAAAGCCTAACTCAAGAAAGAAG
back to top

Coding sequence (CDS) from alignment at scaffold_14:571558..572890+

>mRNA_6124 ID=mRNA_6124|Name=jgi.p|Nanoce1779_2|82305|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_14:571558..572890+ (Nannochloropsis oceanica)
ATGAATCCCGGTGAAAGGCCCTACTTCAAAATCATCCTTTTCTCCTCGTT
TGTTTTGACCATTAATGCAAGCTTCATCAATCTCATAACTCTCCACTCGG
CCAAGGCCATGGCAAGTGTGCATGTCACCGGTATGATTGCACACATTTCA
AACTTTGCTGCGACAAGGGACCTGGCCCCTCTTTACGAATACATAGGCAC
TTACTTGTGCTTTGTAGCGGGTTCATTTACCGCGGGAGTCGTCGTTACTC
AAGAAACATTCTATATGGGTCGAAATTACGGGCGTGCATTATTCCTAATC
GCAGCCGTGGAAGCCGCTGCCCTGCTGACGGAGGCGGCGTATCCAGACAC
TATTTTTTTTATTTGGCTTTGCGCTTATTCGGCAGGCCTTCAAAATGGAT
TGACGTCGAAGTTCTCTGGAAACGCCGTGCGAACTACACACCTCACGGGC
GCCTCGACAGATTTCGGTATTGCCATTGGCCACATTATTAAAGGCAGGAA
GGGGGAGTGGTGGAAGGTGAAGCTGCACGGAATCGCTGTGGTTGGGTTTT
TCATTGGCGGCATTGCCGGTTTCTTCGCTTTTGAGCACTTCGGTCATAAT
GCGTTACTGTTCAATATGGGTATGACAACATCTCTAGCGATTGCCCACAC
CTTCTACATCGCTTATCACGAGCGCCTCTCGCCAATTTTCGTCCTCGAGT
CCAGCCGCGACATCATAATGCACAAGCATCGCGTCGCGAATAATTTGGAT
TTGGGACGTCAGAGCTCTTTCAATCCCGGCCCCTCCCCCTCGGCCTCCTC
CTTGGCAGAGCTCACGCCTACGTCACGGGCAAAGCGCTTGGCGGGTGCCC
GGGCCTCATCCTGCGTGTCCATGCTCCCCCCTGCTTCCATGGCATCCCGA
CTCGAACGACACTTTCCCAAGAACGAGCCAGGCGAAAACGTTGACGACTA
CAAAGCCTAAATGAATCCCGGTGAAAGGCCCTACTTCAAAATCATCCTTT
TCTCCTCGTTTGTTTTGACCATTAATGCAAGCTTCATCAATCTCATAACT
CTCCACTCGGCCAAGGCCATGGCAAGTGTGCATGTCACCGGTATGATTGC
ACACATTTCAAACTTTGCTGCGACAAGGGACCTGGCCCCTCTTTACGAAT
ACATAGGCACTTACTTGTGCTTTGTAGCGGGTTCATTTACCGCGGGAGTC
GTCGTTACTCAAGAAACATTCTATATGGGTCGAAATTACGGGCGTGCATT
ATTCCTAATCGCAGCCGTGGAAGCCGCTGCCCTGCTGACGGAGGCGGCGT
ATCCAGACACTATTTTTTTTATTTGGCTTTGCGCTTATTCGGCAGGCCTT
CAAAATGGATTGACGTCGAAGTTCTCTGGAAACGCCGTGCGAACTACACA
CCTCACGGGCGCCTCGACAGATTTCGGTATTGCCATTGGCCACATTATTA
AAGGCAGGAAGGGGGAGTGGTGGAAGGTGAAGCTGCACGGAATCGCTGTG
GTTGGGTTTTTCATTGGCGGCATTGCCGGTTTCTTCGCTTTTGAGCACTT
CGGTCATAATGCGTTACTGTTCAATATGGGTATGACAACATCTCTAGCGA
TTGCCCACACCTTCTACATCGCTTATCACGAGCGCCTCTCGCCAATTTTC
GTCCTCGAGTCCAGCCGCGACATCATAATGCACAAGCATCGCGTCGCGAA
TAATTTGGATTTGGGACGTCAGAGCTCTTTCAATCCCGGCCCCTCCCCCT
CGGCCTCCTCCTTGGCAGAGCTCACGCCTACGTCACGGGCAAAGCGCTTG
GCGGGTGCCCGGGCCTCATCCTGCGTGTCCATGCTCCCCCCTGCTTCCAT
GGCATCCCGACTCGAACGACACTTTCCCAAGAACGAGCCAGGCGAAAACG
TTGACGACTACAAAGCCTAAATGAATCCCGGTGAAAGGCCCTACTTCAAA
ATCATCCTTTTCTCCTCGTTTGTTTTGACCATTAATGCAAGCTTCATCAA
TCTCATAACTCTCCACTCGGCCAAGGCCATGGCAAGTGTGCATGTCACCG
GTATGATTGCACACATTTCAAACTTTGCTGCGACAAGGGACCTGGCCCCT
CTTTACGAATACATAGGCACTTACTTGTGCTTTGTAGCGGGTTCATTTAC
CGCGGGAGTCGTCGTTACTCAAGAAACATTCTATATGGGTCGAAATTACG
GGCGTGCATTATTCCTAATCGCAGCCGTGGAAGCCGCTGCCCTGCTGACG
GAGGCGGCGTATCCAGACACTATTTTTTTTATTTGGCTTTGCGCTTATTC
GGCAGGCCTTCAAAATGGATTGACGTCGAAGTTCTCTGGAAACGCCGTGC
GAACTACACACCTCACGGGCGCCTCGACAGATTTCGGTATTGCCATTGGC
CACATTATTAAAGGCAGGAAGGGGGAGTGGTGGAAGGTGAAGCTGCACGG
AATCGCTGTGGTTGGGTTTTTCATTGGCGGCATTGCCGGTTTCTTCGCTT
TTGAGCACTTCGGTCATAATGCGTTACTGTTCAATATGGGTATGACAACA
TCTCTAGCGATTGCCCACACCTTCTACATCGCTTATCACGAGCGCCTCTC
GCCAATTTTCGTCCTCGAGTCCAGCCGCGACATCATAATGCACAAGCATC
GCGTCGCGAATAATTTGGATTTGGGACGTCAGAGCTCTTTCAATCCCGGC
CCCTCCCCCTCGGCCTCCTCCTTGGCAGAGCTCACGCCTACGTCACGGGC
AAAGCGCTTGGCGGGTGCCCGGGCCTCATCCTGCGTGTCCATGCTCCCCC
CTGCTTCCATGGCATCCCGACTCGAACGACACTTTCCCAAGAACGAGCCA
GGCGAAAACGTTGACGACTACAAAGCCTAA
back to top
Synonyms
Publications