jgi.p|Nanoce1779_2|593820, mRNA_6122 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593820
Unique NamemRNA_6122
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length917
Alignment locationscaffold_14:569179..570366 +

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Properties
Property NameValue
TranscriptId593906
TrackFilteredModels2
ProteinId593820
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:569179..570366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593820gene_6122Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593820mRNA_6122-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6122CDS_6122Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6122 ID=mRNA_6122|Name=jgi.p|Nanoce1779_2|593820|organism=Nannochloropsis oceanica|type=mRNA|length=917bp
CCAGGGCTTTCTTAATGAAAAGGTACGGGAAAAAGAGGGAAAAGGGGAGG
AACCGGGAAGAGTCCATCGAAGCAATAAATCCCCAAACGAGAGGCCATTC
TCAGATAGCCTGTTTCGAAAAACATATAGAATATTGCTCTAGCCCTCTCC
CCCTCCGCCTGCATCTTGGGGGGCTTCACAGTTGTAGTTCTGACGCTGGC
CCACTGGGTCCTGGCTTTGCTGGAGCAGCACCATGTTGAAGCAGGTGACT
GATGGAAAGAGGATTGGATGCAGACGATGGTGGCGAGAATCGGTGCTCCT
CATTAAGGACCTTGGCGTGCAGCTTCAAACGCGCTACACAAGCGGCCGGG
AGGAGTGTGAGTTTGTGGACTTAGGCCGGGTGCAGGCGGTGGTGATCAAT
GAAGGTATCACACTGCATCGCGTGGTTTACTACCTAGCCTTTGTCGTGGA
AGGCCGGGACACTCTGCTGGTGGGATTCCAGGTTAAGTAGGGAGGAAGAG
AATGGGTTTGGGGACCTATGTGGGATTGAAAGGATTCACATGACGTGGCA
CCTTTCTTCAGTCAGAAGGCTGCACAAAAGGAAGAAGAAGCACTCTTTTT
CTGAAGTTGCTCAGCAAGTCATCTCTTCTATGATCAATCCTATCAAGAAT
TACCGGCTCATTTTGCACACACTCACCTACAGCATCTGAAGCCCTGCCTG
GACGACTTGCTGCCCGTTTATCACAGCGCCCGGGCCATCGTAGAAGCCCA
TATCAAGCACGTCGACGTGGCAGCAGGATGGACAGCGTTGAAGCAGAGGG
AGGGAGGAGGGAGGAGTGAAGGGGATTTGAAAGATAATAAGTCTTATTAA
GTGAAAGCATAACTAAGTTCAGAATCATAAGAAATTACAAAGAAAAAATA
TGCTCTTGAATGACGAC
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protein sequence of jgi.p|Nanoce1779_2|593820

>mRNA_6122-protein ID=mRNA_6122-protein|Name=jgi.p|Nanoce1779_2|593820|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLKQVTDGKRIGCRRWWRESVLLIKDLGVQLQTRYTSGREECEFVDLGRV
QAVVINEGITLHRVVYYLAFVVEGRDTLLVGFQVK*
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mRNA from alignment at scaffold_14:569179..570366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6122 ID=mRNA_6122|Name=jgi.p|Nanoce1779_2|593820|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_14:569179..570366+ (Nannochloropsis oceanica)
CCAGGGCTTTCTTAATGAAAAGGTACGGGAAAAAGAGGGAAAAGGGGAGG
AACCGGGAAGAGTCCATCGAAGCAATAAATCCCCAAACGAGAGGCCATTC
TCAGATAGCCTGTTTCGAAAAACATATAGAATATTGCTCTAGCCCTCTCC
CCCTCCGCCTGCATCTTGGGGGGCTTCACAGTTGTAGTTCTGACGCTGGC
CCACTGGGTCCTGGCTTTGCTGGAGCAGCACCATGTTGAAGCAGGTGACT
GATGGAAAGAGGATTGGATGCAGACGATGGTGGCGAGGTGTGGTCGGGGG
AGAGCAATGGGGGGGGGGAAATGCTCGCCGGGGAGTCGTTATTGCGCATA
TGTTGTTCTTGGGTGATTGCTCCACTGGATGCACCAGAAATGACCTTTAT
GTTGAATACAAAGTCATTTCCTTCTCGCGCGTCATTCTTAACACCGCTTT
CATCTACTTCTCATTTCAGAATCGGTGCTCCTCATTAAGGACCTTGGCGT
GCAGCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGGTTAGTA
GCAGAAAGGAGATGAAGCATATTTTCCATGTTGACGATTCAATATGTTCT
ATCCTATTTAATTGTTATGTAATACATTATAGTTTGTGGACTTAGGCCGG
GTGCAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTGGTTTA
CTACCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGGATTCC
AGGTTAAGTAGGGAGGAAGAGAATGGGTTTGGGGACCTATGTGGGATTGA
AAGGATTCACATGACGTGGCACCTTTCTTCAGTCAGAAGGCTGCACAAAA
GGAAGAAGAAGCACTCTTTTTCTGAAGTTGCTCAGCAAGTCATCTCTTCT
ATGATCAATCCTATCAAGAATTACCGGCTCATTTTGCACACACTCACCTA
CAGCATCTGAAGCCCTGCCTGGACGACTTGCTGCCCGTTTATCACAGCGC
CCGGGCCATCGTAGAAGCCCATATCAAGCACGTCGACGTGGCAGCAGGAT
GGACAGCGTTGAAGCAGAGGGAGGGAGGAGGGAGGAGTGAAGGGGATTTG
AAAGATAATAAGTCTTATTAAGTGAAAGCATAACTAAGTTCAGAATCATA
AGAAATTACAAAGAAAAAATATGCTCTTGAATGACGAC
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Coding sequence (CDS) from alignment at scaffold_14:569179..570366+

>mRNA_6122 ID=mRNA_6122|Name=jgi.p|Nanoce1779_2|593820|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_14:569179..570366+ (Nannochloropsis oceanica)
ATGTTGAAGCAGGTGACTGATGGAAAGAGGATTGGATGCAGACGATGGTG
GCGAGAATCGGTGCTCCTCATTAAGGACCTTGGCGTGCAGCTTCAAACGC
GCTACACAAGCGGCCGGGAGGAGTGTGAGTTTGTGGACTTAGGCCGGGTG
CAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTGGTTTACTA
CCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGGATTCCAGG
TTAAGTAGATGTTGAAGCAGGTGACTGATGGAAAGAGGATTGGATGCAGA
CGATGGTGGCGAGAATCGGTGCTCCTCATTAAGGACCTTGGCGTGCAGCT
TCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGTTTGTGGACTTAG
GCCGGGTGCAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTG
GTTTACTACCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGG
ATTCCAGGTTAAGTAGATGTTGAAGCAGGTGACTGATGGAAAGAGGATTG
GATGCAGACGATGGTGGCGAGAATCGGTGCTCCTCATTAAGGACCTTGGC
GTGCAGCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGTTTGT
GGACTTAGGCCGGGTGCAGGCGGTGGTGATCAATGAAGGTATCACACTGC
ATCGCGTGGTTTACTACCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTG
CTGGTGGGATTCCAGGTTAAGTAG
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Synonyms
Publications