jgi.p|Nanoce1779_2|573511, mRNA_612 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573511
Unique Name	mRNA_612
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	964
Alignment location	scaffold_2:2591..3554 -

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Properties


Property Name	Value
TranscriptId	573597
Track	FilteredModels2
ProteinId	573511

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:2591..3554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573511	gene_612	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573511	mRNA_612-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_612	CDS_612	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:2591..3554-
coding sequence from alignment at scaffold_2:2591..3554-

mRNA sequence

>mRNA_612 ID=mRNA_612|Name=jgi.p|Nanoce1779_2|573511|organism=Nannochloropsis oceanica|type=mRNA|length=964bp
AAAACGACAGAGATACCGCCACAATAAGGGCGAGCGTAAAAGTGCCATGC
GGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCTCCCC
CTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGGCGGA
CGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAACGTCG
AGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTACGATGGA
ATCATTCTCCTCTCTCGTCGTTTCTTTCCCCTCCTACGGCTTATCAACAT
TCCTTCTGCCCTCCTCATACAACCACCCAAGGTGTGGGCATTGCGTAAAG
CTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCAGAAGACTCATTGC
GCATTGGCAAGGTACGTGTGCACGCGTCACTTCTCTCCACCCTCCCTACG
TCGCCTCTCTCCCTCGCAATCCCTCTCCTTGACAATGAGGCCGTTGGCAC
ATTTTTCAAATCCAGATGAAGCCAATATTATCCATTAGCCTTCTTCCCCT
CCTTCCCTTCTGACACCCATCTTCCATCTTTCCCACCCCTTTCCTTTTGT
GTAGGTCGACGCCACTGTCCACACCAAGCTCGGCAAGGAGTTTGGGGTCT
CCGGCTTCCCGACCCTCAAGATCCTCATGCCGCCCCAAAAGGAGGCAGGG
GAGGTGAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGAACGGAAGAC
GAGGAAGGACATGAAATGCGATGCACGGATTTTCTCAGATACCTTTCCCT
CCTTCCCTCCTTCCCCCCCCTCCCTCTCCCTCAGACCGTCGGCACGATCA
GCAACTACGAGGGCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCACC
CGCCTCGCCCTCCCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTC
CTCCTATCTTCGCT

protein sequence of jgi.p|Nanoce1779_2|573511

>mRNA_612-protein ID=mRNA_612-protein|Name=jgi.p|Nanoce1779_2|573511|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MRLSPFSLHHAGLLLLLPLLVLAPLPSMQAAAGADESGVITLTAANFREN
VEDGNTWLVDFYAPWYDGIILLSRRFFPLLRLINIPSALLIQPPKVWALR
KARSRP*

mRNA from alignment at scaffold_2:2591..3554-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_612 ID=mRNA_612|Name=jgi.p|Nanoce1779_2|573511|organism=Nannochloropsis oceanica|type=mRNA|length=964bp|location=Sequence derived from alignment at scaffold_2:2591..3554- (Nannochloropsis oceanica)
AAAACGACAGAGATACCGCCACAATAAGGGCGAGCGTAAAAGTGCCATGC
GGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCTCCCC
CTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGGCGGA
CGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAACGTCG
AGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTACGATGGA
ATCATTCTCCTCTCTCGTCGTTTCTTTCCCCTCCTACGGCTTATCAACAT
TCCTTCTGCCCTCCTCATACAACCACCCAAGGTGTGGGCATTGCGTAAAG
CTAGATCCCGTCCTTGATGAGGTCGTTGCCACAGTCAGAAGACTCATTGC
GCATTGGCAAGGTACGTGTGCACGCGTCACTTCTCTCCACCCTCCCTACG
TCGCCTCTCTCCCTCGCAATCCCTCTCCTTGACAATGAGGCCGTTGGCAC
ATTTTTCAAATCCAGATGAAGCCAATATTATCCATTAGCCTTCTTCCCCT
CCTTCCCTTCTGACACCCATCTTCCATCTTTCCCACCCCTTTCCTTTTGT
GTAGGTCGACGCCACTGTCCACACCAAGCTCGGCAAGGAGTTTGGGGTCT
CCGGCTTCCCGACCCTCAAGATCCTCATGCCGCCCCAAAAGGAGGCAGGG
GAGGTGAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGAACGGAAGAC
GAGGAAGGACATGAAATGCGATGCACGGATTTTCTCAGATACCTTTCCCT
CCTTCCCTCCTTCCCCCCCCTCCCTCTCCCTCAGACCGTCGGCACGATCA
GCAACTACGAGGGCCCTCGAACGAAGGAGGGAATCATGGACCTCGCCACC
CGCCTCGCCCTCCCTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTC
CTCCTATCTTCGCT

Coding sequence (CDS) from alignment at scaffold_2:2591..3554-

>mRNA_612 ID=mRNA_612|Name=jgi.p|Nanoce1779_2|573511|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_2:2591..3554- (Nannochloropsis oceanica)
ATGCGGCTCTCTCCCTTCTCCTTGCACCATGCCGGCCTTCTCCTCCTTCT
CCCCCTCCTTGTGCTGGCCCCTCTCCCTTCCATGCAGGCTGCTGCTGGGG
CGGACGAGAGCGGCGTTATCACATTGACTGCAGCCAACTTCCGGGAAAAC
GTCGAGGATGGGAACACATGGCTTGTGGATTTTTATGCCCCTTGGTACGA
TGGAATCATTCTCCTCTCTCGTCGTTTCTTTCCCCTCCTACGGCTTATCA
ACATTCCTTCTGCCCTCCTCATACAACCACCCAAGGTGTGGGCATTGCGT
AAAGCTAGATCCCGTCCTTGA

Synonyms

Publications