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Properties
| Property Name | Value |
|---|
| TranscriptId | 593895 |
| Track | FilteredModels2 |
| ProteinId | 593809 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:560574..562104 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6119 ID=mRNA_6119|Name=jgi.p|Nanoce1779_2|593809|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp
AGGACAGGGAAGCCATCTGCTATACCTTACAAGCCAGTATGATTCGCCAA
GTGCTAGGTATGTGCATCTTTCACTCTCCTTGTCTGCTTTCTGCCTCCAG
CAAACAAGGGAACAAATGATGGCGGTCCGCGCTGCAACACATGCACCGCT
ACTACAAGCAGCTAAAAAATCACACTCCCATCAGATCAGACTCTGAAAAA
CTCGGGCGTAGGTGCAGCCTTTTGGTCTCTCCCCACTTCTGGGCTTGTTG
CAAATTTTTAGCCTCATCGATATTCGATACTACCCTCGAACCTCTAATCG
CCCTCCCCCAAGTCACGACTCTGCCCCTACCCCACCCCTACACTCAACAG
TCCTGGCCCTGGTGGCGGCCTACGCCACGACATGTAGCATGGGTTTCGTG
GTCCCCTCCCTCCCTGTCACAGCTGTCACGACCTCCCGCCGCAACATGGT
GGTGATGAAAGTTGAAGGCGCCCGCATGCCTATCAAGAGAGGCAGCATGG
TGGCGCTCGTAACGCCGATGAAGCCGGACGGGGCCGTGGACGAGGGGCAG
CTTCGGACTCTCTTACAATGGCACGTGGCTTGTCAGACGGACGGTGTGGT
TGTGCTGGGCACGACTGGAGAGGCTTCCACCTTGTCTTTCGAGGAGCGAG
CGCGAGTGTTGGACATAACTGCCGAGGAGATTAAGGGCAAGATTCCGATT
GTGGTTGGCACGGGCACCATTGACCCCCGCACTGTCGTGAAGCTGACACA
GCAGGCAGTGAATCATGGAGCCGATGCCAGCTTGGTTGTGACGCCTTACT
ATGTCAAACCGACGCAAAAAGGGCTAGTATCTCACTTCGGCTATGTCGCC
GAAGCGGTCGACTTGCCCTGCCTCCTGTACAACGTCCCAGGCCGGACGGG
CTCGGACATCAAGCCTGAAACCGCGGCAGAGGTGGCAGCGAAGAACCCGA
GCGTGATCGGAATCAAGGAAGCCACGGGAGATGTGTCGCGTGTGGCGGCC
ATTCGGAAGGTGGCGGGGAACAAGTTTTTGCTTTACAGTGGTGATGATGA
AACAGGGGCCGAATTTGTGCTGAAAGGAGGTGATGGTGTCATCTCTGTGA
CCTCTAATGTTGTCCCCGATGTGATGCACCAACTGATGATGGCGGCCCTC
GCCAAAGACGCGGCGCTGACTGAGCAGTTGAACAAGCCTCTTGAGCTGCT
GCACCAACGCTTATTCCTCCAATCAAACCCCATCCCGGCCAAATGGGCTC
TGTATCGCATGGGTAAGATTGGTGCGGGGATTCGCCCACCTATGACGGTG
ATGGAAGAGGAGTTTCATAAACCCTTGGAAGAGGCATTAAAGGCGGCGGG
AGCTATCTAAGTATAGAGGAGGAGGCAGGGAGGGTGGAAGAGGAGGTGTC
AGGGAGAGGGATGAGAGAGAGTGGGAGAAGAGGAGGTAATACAAAAGCGA
GCCGCCAAGTTTAGAAATCAAGCAATCAACGATGCAAATGAAACGGAAAC
AGGAGCGTCACTTTCCTGCTTGCGGATGGAT back to topprotein sequence of jgi.p|Nanoce1779_2|593809 >mRNA_6119-protein ID=mRNA_6119-protein|Name=jgi.p|Nanoce1779_2|593809|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MGFVVPSLPVTAVTTSRRNMVVMKVEGARMPIKRGSMVALVTPMKPDGAV
DEGQLRTLLQWHVACQTDGVVVLGTTGEASTLSFEERARVLDITAEEIKG
KIPIVVGTGTIDPRTVVKLTQQAVNHGADASLVVTPYYVKPTQKGLVSHF
GYVAEAVDLPCLLYNVPGRTGSDIKPETAAEVAAKNPSVIGIKEATGDVS
RVAAIRKVAGNKFLLYSGDDETGAEFVLKGGDGVISVTSNVVPDVMHQLM
MAALAKDAALTEQLNKPLELLHQRLFLQSNPIPAKWALYRMGKIGAGIRP
PMTVMEEEFHKPLEEALKAAGAI* back to topmRNA from alignment at scaffold_14:560574..562104+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6119 ID=mRNA_6119|Name=jgi.p|Nanoce1779_2|593809|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp|location=Sequence derived from alignment at scaffold_14:560574..562104+ (Nannochloropsis oceanica)
AGGACAGGGAAGCCATCTGCTATACCTTACAAGCCAGTATGATTCGCCAA
GTGCTAGGTATGTGCATCTTTCACTCTCCTTGTCTGCTTTCTGCCTCCAG
CAAACAAGGGAACAAATGATGGCGGTCCGCGCTGCAACACATGCACCGCT
ACTACAAGCAGCTAAAAAATCACACTCCCATCAGATCAGACTCTGAAAAA
CTCGGGCGTAGGTGCAGCCTTTTGGTCTCTCCCCACTTCTGGGCTTGTTG
CAAATTTTTAGCCTCATCGATATTCGATACTACCCTCGAACCTCTAATCG
CCCTCCCCCAAGTCACGACTCTGCCCCTACCCCACCCCTACACTCAACAG
TCCTGGCCCTGGTGGCGGCCTACGCCACGACATGTAGCATGGGTTTCGTG
GTCCCCTCCCTCCCTGTCACAGCTGTCACGACCTCCCGCCGCAACATGGT
GGTGATGAAAGTTGAAGGCGCCCGCATGCCTATCAAGAGAGGCAGCATGG
TGGCGCTCGTAACGCCGATGAAGCCGGACGGGGCCGTGGACGAGGGGCAG
CTTCGGACTCTCTTACAATGGCACGTGGCTTGTCAGACGGACGGTGTGGT
TGTGCTGGGCACGACTGGAGAGGCTTCCACCTTGTCTTTCGAGGAGCGAG
CGCGAGTGTTGGACATAACTGCCGAGGAGATTAAGGGCAAGATTCCGATT
GTGGTTGGCACGGGCACCATTGACCCCCGCACTGTCGTGAAGCTGACACA
GCAGGCAGTGAATCATGGAGCCGATGCCAGCTTGGTTGTGACGCCTTACT
ATGTCAAACCGACGCAAAAAGGGCTAGTATCTCACTTCGGCTATGTCGCC
GAAGCGGTCGACTTGCCCTGCCTCCTGTACAACGTCCCAGGCCGGACGGG
CTCGGACATCAAGCCTGAAACCGCGGCAGAGGTGGCAGCGAAGAACCCGA
GCGTGATCGGAATCAAGGAAGCCACGGGAGATGTGTCGCGTGTGGCGGCC
ATTCGGAAGGTGGCGGGGAACAAGTTTTTGCTTTACAGTGGTGATGATGA
AACAGGGGCCGAATTTGTGCTGAAAGGAGGTGATGGTGTCATCTCTGTGA
CCTCTAATGTTGTCCCCGATGTGATGCACCAACTGATGATGGCGGCCCTC
GCCAAAGACGCGGCGCTGACTGAGCAGTTGAACAAGCCTCTTGAGCTGCT
GCACCAACGCTTATTCCTCCAATCAAACCCCATCCCGGCCAAATGGGCTC
TGTATCGCATGGGTAAGATTGGTGCGGGGATTCGCCCACCTATGACGGTG
ATGGAAGAGGAGTTTCATAAACCCTTGGAAGAGGCATTAAAGGCGGCGGG
AGCTATCTAAGTATAGAGGAGGAGGCAGGGAGGGTGGAAGAGGAGGTGTC
AGGGAGAGGGATGAGAGAGAGTGGGAGAAGAGGAGGTAATACAAAAGCGA
GCCGCCAAGTTTAGAAATCAAGCAATCAACGATGCAAATGAAACGGAAAC
AGGAGCGTCACTTTCCTGCTTGCGGATGGAT back to topCoding sequence (CDS) from alignment at scaffold_14:560574..562104+ >mRNA_6119 ID=mRNA_6119|Name=jgi.p|Nanoce1779_2|593809|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_14:560574..562104+ (Nannochloropsis oceanica)
ATGGGTTTCGTGGTCCCCTCCCTCCCTGTCACAGCTGTCACGACCTCCCG
CCGCAACATGGTGGTGATGAAAGTTGAAGGCGCCCGCATGCCTATCAAGA
GAGGCAGCATGGTGGCGCTCGTAACGCCGATGAAGCCGGACGGGGCCGTG
GACGAGGGGCAGCTTCGGACTCTCTTACAATGGCACGTGGCTTGTCAGAC
GGACGGTGTGGTTGTGCTGGGCACGACTGGAGAGGCTTCCACCTTGTCTT
TCGAGGAGCGAGCGCGAGTGTTGGACATAACTGCCGAGGAGATTAAGGGC
AAGATTCCGATTGTGGTTGGCACGGGCACCATTGACCCCCGCACTGTCGT
GAAGCTGACACAGCAGGCAGTGAATCATGGAGCCGATGCCAGCTTGGTTG
TGACGCCTTACTATGTCAAACCGACGCAAAAAGGGCTAGTATCTCACTTC
GGCTATGTCGCCGAAGCGGTCGACTTGCCCTGCCTCCTGTACAACGTCCC
AGGCCGGACGGGCTCGGACATCAAGCCTGAAACCGCGGCAGAGGTGGCAG
CGAAGAACCCGAGCGTGATCGGAATCAAGGAAGCCACGGGAGATGTGTCG
CGTGTGGCGGCCATTCGGAAGGTGGCGGGGAACAAGTTTTTGCTTTACAG
TGGTGATGATGAAACAGGGGCCGAATTTGTGCTGAAAGGAGGTGATGGTG
TCATCTCTGTGACCTCTAATGTTGTCCCCGATGTGATGCACCAACTGATG
ATGGCGGCCCTCGCCAAAGACGCGGCGCTGACTGAGCAGTTGAACAAGCC
TCTTGAGCTGCTGCACCAACGCTTATTCCTCCAATCAAACCCCATCCCGG
CCAAATGGGCTCTGTATCGCATGGGTAAGATTGGTGCGGGGATTCGCCCA
CCTATGACGGTGATGGAAGAGGAGTTTCATAAACCCTTGGAAGAGGCATT
AAAGGCGGCGGGAGCTATCTAA back to top
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