jgi.p|Nanoce1779_2|631332, mRNA_6118 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631332
Unique NamemRNA_6118
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length634
Alignment locationscaffold_14:559237..560245 -

Link to JBrowse

Properties
Property NameValue
TranscriptId631418
TrackFilteredModels2
ProteinId631332
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:559237..560245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631332gene_6118Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631332mRNA_6118-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6118CDS_6118Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6118 ID=mRNA_6118|Name=jgi.p|Nanoce1779_2|631332|organism=Nannochloropsis oceanica|type=mRNA|length=634bp
ATGCCTCTCCTGCTGCTCTGCTTAGCCATCTCGGCAAGCATCATGACCGC
CACCTGGGTATGCCCGCCTGCTTTTGTTGCCGCATTCCCTGGTCACACGC
GTAATCGCCAAGACCAGCAGCTCCTTTTCTGCCCGCGTTCGCGAGGCGTC
TTGTTGCTCTCCTCTTTTCCGCAAAAGGAGGATGTGTCCGAAATCGAAAT
CGAAGAAGAGAAGAAAGTAGGGCCTGTAAACCGTCCTACGACTTTGACGA
TGACCAATACCACGACAGCTGCCTTTGATTTGCTCGTCACCACGATAGAA
AATTGGGCCACTCTTATTGAGGACCGCCAAGATCTTTCTAAGGAAGAGAT
TATCGACCGCCTGGATGAATGGATGCACAAGATCGACGGGGACCAACGCC
TCGCCCGAGTCTGGTTCGAAAAACTCAACAAGGACATACATCGCATCTTG
ATCATAGTGCTCATCTTTTTCGGCATCAGTTTGGCCGCCATCGCTCCCAC
GTGGTTTGCAGCCAAGTGAGAGAAGGGTGTAAAAGACATGACAAATCGGA
GCCATAAGATGCTAAGGACAAAGCAGGGAGAAATGGAAGACAATCAGACA
ACTTGCATTTCTTGTTGTCCCGTAAAGAAAAGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|631332

>mRNA_6118-protein ID=mRNA_6118-protein|Name=jgi.p|Nanoce1779_2|631332|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MPLLLLCLAISASIMTATWVCPPAFVAAFPGHTRNRQDQQLLFCPRSRGV
LLLSSFPQKEDVSEIEIEEEKKVGPVNRPTTLTMTNTTTAAFDLLVTTIE
NWATLIEDRQDLSKEEIIDRLDEWMHKIDGDQRLARVWFEKLNKDIHRIL
IIVLIFFGISLAAIAPTWFAAK*
back to top

mRNA from alignment at scaffold_14:559237..560245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6118 ID=mRNA_6118|Name=jgi.p|Nanoce1779_2|631332|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp|location=Sequence derived from alignment at scaffold_14:559237..560245- (Nannochloropsis oceanica)
ATGCCTCTCCTGCTGCTCTGCTTAGCCATCTCGGCAAGCATCATGACCGC
CACCTGGGTATGCCCGCCTGCTTTTGTTGCCGCATTCCCTGGTCACACGC
GTAATCGCCAAGACCAGCAGCTCCTTTTCTGCCCGCGTTCGCGAGGCGTC
TTGTTGCTCTCCTCTTTTCCGCAAAAGGAGGATGTGTCCGAAATCGAAAT
CGAAGAAGAGAAGAAAGTAGGGCCTGTAAACCGTCCTACGACTTTGACGA
TGACCAATACCACGACAGCTGCCTTTGATTTGCTCGTCACCACGATAGAA
AATTGGGCCACTCTTATTGAGGACCGCCAAGATCTTTCTAAGGGTACGTG
CGCACCATTGAGGAAAAGATTGTTACACCCCGAATCATAAGTTTTCGTCG
TGTGATTCATAGTTTCTTGCTTGGATGTACGTTTAGCCTCTGCTTTAAAT
TTAGTGGAGACATTAAATTTCTTGCTGTCATGGCATGAGGACCTGCTTGA
CTAAGTGTAACATGAAAGATTTATGCTTGCTGACAAGAAATTTAGAGATA
AGACTCAAGATGTCCACACCATATGAATACCTGCCAGTAAAAAACTGCCA
GTAAAATATCATGCAAGCTGTCTTTATCTCTTCTCAACATAAAGTGTAAG
ACATACTTGACAAGGGCCTTACACTTTTTTTTACACATAAATAAATAAAT
AAATAAATAAACTCACAGAAGAGATTATCGACCGCCTGGATGAATGGATG
CACAAGATCGACGGGGACCAACGCCTCGCCCGAGTCTGGTTCGAAAAACT
CAACAAGGACATACATCGCATCTTGATCATAGTGCTCATCTTTTTCGGCA
TCAGTTTGGCCGCCATCGCTCCCACGTGGTTTGCAGCCAAGTGAGAGAAG
GGTGTAAAAGACATGACAAATCGGAGCCATAAGATGCTAAGGACAAAGCA
GGGAGAAATGGAAGACAATCAGACAACTTGCATTTCTTGTTGTCCCGTAA
AGAAAAGAG
back to top

Coding sequence (CDS) from alignment at scaffold_14:559237..560245-

>mRNA_6118 ID=mRNA_6118|Name=jgi.p|Nanoce1779_2|631332|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_14:559237..560245- (Nannochloropsis oceanica)
AAGAGATTATCGACCGCCTGGATGAATGGATGCACAAGATCGACGGGGAC
CAACGCCTCGCCCGAGTCTGGTTCGAAAAACTCAACAAGGACATACATCG
CATCTTGATCATAGTGCTCATCTTTTTCGGCATCAGTTTGGCCGCCATCG
CTCCCACGTGGTTTGCAGCCAAGTGAATGCCTCTCCTGCTGCTCTGCTTA
GCCATCTCGGCAAGCATCATGACCGCCACCTGGGTATGCCCGCCTGCTTT
TGTTGCCGCATTCCCTGGTCACACGCGTAATCGCCAAGACCAGCAGCTCC
TTTTCTGCCCGCGTTCGCGAGGCGTCTTGTTGCTCTCCTCTTTTCCGCAA
AAGGAGGATGTGTCCGAAATCGAAATCGAAGAAGAGAAGAAAGTAGGGCC
TGTAAACCGTCCTACGACTTTGACGATGACCAATACCACGACAGCTGCCT
TTGATTTGCTCGTCACCACGATAGAAAATTGGGCCACTCTTATTGAGGAC
CGCCAAGATCTTTCTAAGGAAGAGATTATCGACCGCCTGGATGAATGGAT
GCACAAGATCGACGGGGACCAACGCCTCGCCCGAGTCTGGTTCGAAAAAC
TCAACAAGGACATACATCGCATCTTGATCATAGTGCTCATCTTTTTCGGC
ATCAGTTTGGCCGCCATCGCTCCCACGTGGTTTGCAGCCAAGTGAATGCC
TCTCCTGCTGCTCTGCTTAGCCATCTCGGCAAGCATCATGACCGCCACCT
GGGTATGCCCGCCTGCTTTTGTTGCCGCATTCCCTGGTCACACGCGTAAT
CGCCAAGACCAGCAGCTCCTTTTCTGCCCGCGTTCGCGAGGCGTCTTGTT
GCTCTCCTCTTTTCCGCAAAAGGAGGATGTGTCCGAAATCGAAATCGAAG
AAGAGAAGAAAGTAGGGCCTGTAAACCGTCCTACGACTTTGACGATGACC
AATACCACGACAGCTGCCTTTGATTTGCTCGTCACCACGATAGAAAATTG
GGCCACTCTTATTGAGGACCGCCAAGATCTTTCTAAGG
back to top
Synonyms
Publications