jgi.p|Nanoce1779_2|82191, mRNA_6116 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|82191
Unique NamemRNA_6116
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length913
Alignment locationscaffold_14:554889..555887 +

Link to JBrowse

Properties
Property NameValue
TranscriptId82277
TrackFilteredModels2
ProteinId82191
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:554889..555887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82191gene_6116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82191mRNA_6116-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6116CDS_6116Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6116 ID=mRNA_6116|Name=jgi.p|Nanoce1779_2|82191|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
GGAGCCATTTTGGACAGGTAGTTTGGACCATTGGCATCCTGTTCAAAGAA
CGTCAGAATTGAGGAGTGCCTTGCCTCGGGAAAAACGCTGCAGCAGGAGC
GAGATGCGGAGTTTTTCGTGGATATGCTCACGCGACACCACACACCAGAA
TAATTGGCCAGGCTCTTGGTAGATACCAGATCACTGGGCTCACACATGCA
ATTAAAATCAACCGCACTTATAATGGGCATGATCATCTTCGGGACTTGTT
TGGGCCTTCCGCACCTGTATCCGTGGAGAAGTGGGCCCAAGCGCCTGGGT
CCACCACCTTCTCCTTCCAGCATGTCTTGGTGCCGCTCCTTTCATGTCCT
GACATCAGAATCAATCCGTAAATCAGTCCTAGACCTGGAGCAACGTGCTT
TATGCGGCACTTTACGGGTCCAAGGGCGCAGGTTGGCCGATCCCAAAGAA
GTTCTTTCCGAGCATGACAAGCTGCAATTAACGAAGGTTGCCAAGAGCCT
TGGCCGTATAAAAAAGAAGCCCCCACCCACGCAGCAAATATTTGAAGCGT
CTACAGCCGCCATGCGGAAAATGGGTACGTCCGCCAAGATAGCCCAACAT
TTGGTCATGTGGCCCCCTGCCAAAGGCATTGTCATGGAGGTGAAGATAAT
TTGGATCTAGGCTAAGGTCCTGCTTTTCAAGTCCCAGCTTAACGAGTTCA
ACCTGACGAAAAGACCTCCGCACGAAAAATGGAAGCTCTTTGTTGGCAAA
CTGGAACCGTAGATCATGAAAATTCAGTCTACAGCGGTCCAATTCAAGCA
TCATCAAATCAAAGCCTTTGCTATTTGTGAACTGGCGACACTTCTTACGA
CAGTAAGCCTCCAAATGACAGAAGGGACGGGTTCAACACAAAGAGATTTG
GTTCAACGCAGAG
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protein sequence of jgi.p|Nanoce1779_2|82191

>mRNA_6116-protein ID=mRNA_6116-protein|Name=jgi.p|Nanoce1779_2|82191|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MQLKSTALIMGMIIFGTCLGLPHLYPWRSGPKRLGPPPSPSSMSWCRSFH
VLTSESIRKSVLDLEQRALCGTLRVQGRRLADPKEVLSEHDKLQLTKVAK
SLGRIKKKPPPTQQIFEASTAAMRKMGTSAKIAQHLVMWPPAKGIVMEVK
IIWI*
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mRNA from alignment at scaffold_14:554889..555887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6116 ID=mRNA_6116|Name=jgi.p|Nanoce1779_2|82191|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at scaffold_14:554889..555887+ (Nannochloropsis oceanica)
GGAGCCATTTTGGACAGGTAGTTTGGACCATTGGCATCCTGTTCAAAGAA
CGTCAGAATTGAGGAGTGCCTTGCCTCGGGAAAAACGCTGCAGCAGGAGC
GAGATGCGGAGTTTTTCGTGGATATGCTCACGCGACACCACACACCAGAA
TAATTGGCCAGGCTCTTGGTAGATACCAGGTAAGGAAAAGAACCGGGCTA
GAAGGATAAAGGGAAGAGTCTGAACATCACACTACTGACATTCCTGTTTG
CCTCTTCCCTGTCAGATCACTGGGCTCACACATGCAATTAAAATCAACCG
CACTTATAATGGGCATGATCATCTTCGGGACTTGTTTGGGCCTTCCGCAC
CTGTATCCGTGGAGAAGTGGGCCCAAGCGCCTGGGTCCACCACCTTCTCC
TTCCAGCATGTCTTGGTGCCGCTCCTTTCATGTCCTGACATCAGAATCAA
TCCGTAAATCAGTCCTAGACCTGGAGCAACGTGCTTTATGCGGCACTTTA
CGGGTCCAAGGGCGCAGGTTGGCCGATCCCAAAGAAGTTCTTTCCGAGCA
TGACAAGCTGCAATTAACGAAGGTTGCCAAGAGCCTTGGCCGTATAAAAA
AGAAGCCCCCACCCACGCAGCAAATATTTGAAGCGTCTACAGCCGCCATG
CGGAAAATGGGTACGTCCGCCAAGATAGCCCAACATTTGGTCATGTGGCC
CCCTGCCAAAGGCATTGTCATGGAGGTGAAGATAATTTGGATCTAGGCTA
AGGTCCTGCTTTTCAAGTCCCAGCTTAACGAGTTCAACCTGACGAAAAGA
CCTCCGCACGAAAAATGGAAGCTCTTTGTTGGCAAACTGGAACCGTAGAT
CATGAAAATTCAGTCTACAGCGGTCCAATTCAAGCATCATCAAATCAAAG
CCTTTGCTATTTGTGAACTGGCGACACTTCTTACGACAGTAAGCCTCCAA
ATGACAGAAGGGACGGGTTCAACACAAAGAGATTTGGTTCAACGCAGAG
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Coding sequence (CDS) from alignment at scaffold_14:554889..555887+

>mRNA_6116 ID=mRNA_6116|Name=jgi.p|Nanoce1779_2|82191|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_14:554889..555887+ (Nannochloropsis oceanica)
ATGCAATTAAAATCAACCGCACTTATAATGGGCATGATCATCTTCGGGAC
TTGTTTGGGCCTTCCGCACCTGTATCCGTGGAGAAGTGGGCCCAAGCGCC
TGGGTCCACCACCTTCTCCTTCCAGCATGTCTTGGTGCCGCTCCTTTCAT
GTCCTGACATCAGAATCAATCCGTAAATCAGTCCTAGACCTGGAGCAACG
TGCTTTATGCGGCACTTTACGGGTCCAAGGGCGCAGGTTGGCCGATCCCA
AAGAAGTTCTTTCCGAGCATGACAAGCTGCAATTAACGAAGGTTGCCAAG
AGCCTTGGCCGTATAAAAAAGAAGCCCCCACCCACGCAGCAAATATTTGA
AGCGTCTACAGCCGCCATGCGGAAAATGGGTACGTCCGCCAAGATAGCCC
AACATTTGGTCATGTGGCCCCCTGCCAAAGGCATTGTCATGGAGGTGAAG
ATAATTTGGATCTAG
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Synonyms
Publications