jgi.p|Nanoce1779_2|649329, mRNA_6115 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|649329
Unique NamemRNA_6115
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1840
Alignment locationscaffold_14:551448..553614 -

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Properties
Property NameValue
TranscriptId649415
TrackFilteredModels2
ProteinId649329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:551448..553614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649329gene_6115Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649329mRNA_6115-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6115CDS_6115Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6115 ID=mRNA_6115|Name=jgi.p|Nanoce1779_2|649329|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
GCTCTTCTTAATCACGACCAGAAAATGGTTGGACACGTCCGCTATCCCTG
GATTGACCCTCGCAAAACGATCTCCGCACTGTGGCGGCAGTGCGTCCTGT
GGCGGCAGTCGCCCATTTGAAGGCGCTCACAACAAACACCATCTCACTCA
TATTTTTTTAATTTTCCTCGCCTCGCCCCTCATTTGCTTCCTTGCTTATG
CAATTTTGGAGGGGCAGACTCTCCTTCCAACTAACCAGACGTACAAACAG
ACTGCTCTTATATCTCACTGCACACAACCTACATGCCATAGGTGAAGTGG
AGGTCAGGAATAGAGCAGGGCGTGGCTGTCTTCTTTCTGCGTGCCAGCAT
CAACATCTAGCCGCCTCAACAGCTCACGGGACCCCACCACACGTACATTT
CACACAATGCGGTGCTCTCTCCTTTCCTCAGCCTTGGCGCCATCGTCATC
GGGATTGCTTCCTTTCACCAGCCCGGTGGCATAGCAAGCTCTCCTTCGCA
CACATCCACACACCCTTACCATCACCTCTAGCCTCCAGCTTCCTGACTTA
TATTGTCCATCATTCCCATCGCCATATGTAAACAGGAGAAGCGTGCCGAC
AGCCTCGCACGACGTTCGGCACCGAAGAAGGAGAGAGACGCAAGACTCTC
GCTTTTCCTCCGCGAGCGGACCCGCCCTCCTTCCTTGCACCCAAACCATG
GGCGGTTTCCATCACGCCGTCGTGGCGATCACGGGTCTATGTGCAGGTGT
GGCCGTTCTACTGTCGGCGGCCTTAATCCAGCAGCACTTGACCCACTTCA
GTAAGCCGATGGTGCAAAGCAAAATTGTCGGCATCCTCTGGATGGTTCCC
ATCTACACCGTGCAGAGCTGGTTGTCGTTGTCGTTCAAGCACTACGCCCT
ATACTTGGACATGTTTCGGGACTGCTACGAGTCTTATGTGCTGTACCTCT
TTTTGGCCCTGCTGGTAGCTTATTTAGGAGACGGCGATGAAGGCCGCGTA
GTGGAGCTGTTGGAACGCCAGCCCCGGGTAAAGCATGTGTATCCCTTCAA
GCTCTGCTTGGGCGGGGGGGAAGTGCCACACGGCGCTGAGTTTCTCAAGT
TTTGCAAGTTTGGGACGATGCAATACATTGTTCTCAAGCCGACTTGTACG
CTGGTTGCGGTCATTTTGTCTGCTTGTGGCTTGTACGGGGAAGGCTCTTT
TGCCCTGAACCGGTTTTGGGCTTACCAGACATTTATCATGAATGTCTCGG
TCGGCTATGCCTTTTATTGCCTGGGCATGTTTTATGTCCTTTTGCACGGT
CCCTTGGAGGTCCACAATCCCGTGCCAAAATTCTTGTGTATCAAAGCTGT
CCTCTTCCTCTCCTTCTGGCAAGGTGTCATCATCGCTGCGCTCGTCCGCC
TCGGCCTCCTCCCGCACTTTGGAGAATGGACGACACAAAACGTCGCCATG
GCTATCCAGGAAGTTTTAATTTGTATCGAAATGATGCTGGTGGCATTCGC
GCACCGATACGCCTTCCCCGTCACCGACTACATGGGTGCCCCTGCCATGC
GGACGAGCCTGCTCTCCGATCATTTCTCACATACCTCGGCCTTGAGAGAT
TTTAACGAGGTGATGCCTGTCTTGCTTCCCTCTAATTTTACACCTGGTTT
GGCTCAGAGCATCGACCGCAGCAGTGCTGGTGGTGAAATAGCTGACGTGG
GCAGCGACAACCGCATCACGACCAGCAGCAATGGCAATGACGGGTCTAGT
CCCCCAGGAGGCGCAGTGACTACTGCCCCACATTTGGGGAAAGGTGAGGC
ACTGACTTTGAAAAAGCTGCCGTGGCGAATGAATAAATGA
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protein sequence of jgi.p|Nanoce1779_2|649329

>mRNA_6115-protein ID=mRNA_6115-protein|Name=jgi.p|Nanoce1779_2|649329|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MGGFHHAVVAITGLCAGVAVLLSAALIQQHLTHFSKPMVQSKIVGILWMV
PIYTVQSWLSLSFKHYALYLDMFRDCYESYVLYLFLALLVAYLGDGDEGR
VVELLERQPRVKHVYPFKLCLGGGEVPHGAEFLKFCKFGTMQYIVLKPTC
TLVAVILSACGLYGEGSFALNRFWAYQTFIMNVSVGYAFYCLGMFYVLLH
GPLEVHNPVPKFLCIKAVLFLSFWQGVIIAALVRLGLLPHFGEWTTQNVA
MAIQEVLICIEMMLVAFAHRYAFPVTDYMGAPAMRTSLLSDHFSHTSALR
DFNEVMPVLLPSNFTPGLAQSIDRSSAGGEIADVGSDNRITTSSNGNDGS
SPPGGAVTTAPHLGKGEALTLKKLPWRMNK*
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mRNA from alignment at scaffold_14:551448..553614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6115 ID=mRNA_6115|Name=jgi.p|Nanoce1779_2|649329|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at scaffold_14:551448..553614- (Nannochloropsis oceanica)
GCTCTTCTTAATCACGACCAGAAAATGGTTGGACACGTCCGCTATCCCTG
GATTGACCCTCGCAAAACGATCTCCGCACTGTGGCGGCAGTGCGTCCTGT
GGCGGCAGTCGCCCATTTGAAGGCGCTCACAACAAACACCATCTCACTCA
TATTTTTTTAATTTTCCTCGCCTCGCCCCTCATTTGCTTCCTTGCTTATG
CAATTTTGGAGGGGCAGACTCTCCTTCCAACTAACCAGACGTACAAACAG
ACTGCTCTTATATCTCACTGCACACAACCTACATGCCATAGGTGAAGTGG
AGGTCAGGAATAGAGCAGGGCGTGGCTGTCTTCTTTCTGCGTGCCAGCAT
CAACATCTAGCCGCCTCAACAGCTCACGGGACCCCACCACACGTACATTT
CACACAATGCGGTGCTCTCTCCTTTCCTCAGCCTTGGCGCCATCGTCATC
GGGATTGCTTCCTTTCACCAGCCCGGTGGCATAGCAAGCTCTCCTTCGCA
CACATCCACACACCCTTACCATCACCTCTAGCCTCCAGCTTCCTGACTTA
TATTGTCCATCATTCCCATCGCCATATGTAAACAGGAGAAGCGTGCCGAC
AGCCTCGCACGACGTTCGGCACCGAAGAAGGAGAGAGACGCAAGACTCTC
GCTTTTCCTCCGCGAGCGGACCCGCCCTCCTTCCTTGCACCCAAACCATG
GGCGGTTTCCATCACGCCGTCGTGGCGATCACGGGTCTATGTGCAGGTGT
GGCCGTTCTACTGTCGGCGGCCTTAATCCAGCAGCACTTGACCCACTTCA
GTAAGCCGATGGTGCAAAGCAAAATTGTCGGCATCCTCTGGATGGTTCCC
ATCTACACCGTGCAGAGCTGGTTGTCGTTGTCGTTCAAGCACTACGCCCT
ATACTTGGACATGTTTCGGGACTGCTACGAGTCTTATGTGCTGTACCTCT
TTTTGGCCCTGCTGGTAGCTTATTTAGGAGACGGCGATGAAGGCCGCGTA
GTGGAGCTGTTGGAACGCCAGCCCCGGGTAAAGCATGTGTATCCCTTCAA
GCTCTGCTTGGGCGGGGGGGAAGTGCCACACGGCGCTGAGTTTCTCAAGT
TTTGCAAGTTTGGGACGATGCAATACATTGTTCTCAAGCCGACTTGTACG
CTGGTTGCGGTCATTTTGTCTGCTTGTGGCTTGTACGGGGAAGGCTCTTT
TGCCCTGAACCGGTTTTGGGCTTACCAGACATTTATCATGAATGTCTCGG
TCGGCTATGCCTTTTATTGCCTGGGCATGTTTTATGTCCTTTTGCACGGT
CCCTTGGAGGTCCACAATCCCGTGCCAAAATTCTTGTGTATCAAAGCTGT
CCTCTTCCTCTCCTTCTGGCAAGGTGTCATCATCGCTGCGCTCGTCCGCC
TCGGCCTCCTCCCGCACTTTGGAGAATGGACGACACAAAACGTCGCCATG
GCTATCCAGGAAGTTTTAATTTGTATCGAAATGATGCTGGTGGCATTCGC
GCACCGATACGCCTTCCCCGTCACCGACTACATGGGTGCCCCTGCCATGC
GGACGAGCCTGCTCTCCGATCATTTCTCACATACCTCGGCCTTGAGAGAT
TTTAACGAGGTGATGCCTGTCTTGCTTCCCTCTAATTTTACACCTGGTTT
GGCTCAGAGCATCGACCGCAGCAGTGCTGGTGGTGGTACGGGAGGGAATG
GAGTCTCCCCCCCGCCTGTCTTCTTGCCCTCCTCATCCCAGCAGAAGCAG
CAGCTGCAGCAGCAATCCATGGGTGCTTCCATATCAGCGCTTCAGCAAAG
AGGACGACAACGAGACATGGAAGGAGGAGGAGGGGGTGGCGAGGGAGGGT
GGCGGCGGTTGAGCAGCAGCACTAGCATCCTGGAGACTGGAAGGCCGTCA
TGGAAGCTCGGTATTGGCTATGATTTTGAGACTGTGGGAGGAGGGGAACG
ATACGACTCTTATGGTGCACCCACTTCTTCTTCTTATGCTTTTCCATCAT
CCCCATCGGCAGAAATAGCTGACGTGGGCAGCGACAACCGCATCACGACC
AGCAGCAATGGCAATGACGGGTCTAGTCCCCCAGGAGGCGCAGTGACTAC
TGCCCCACATTTGGGGAAAGGTGAGGCACTGACTTTGAAAAAGCTGCCGT
GGCGAATGAATAAATGA
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Coding sequence (CDS) from alignment at scaffold_14:551448..553614-

>mRNA_6115 ID=mRNA_6115|Name=jgi.p|Nanoce1779_2|649329|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_14:551448..553614- (Nannochloropsis oceanica)
AAATAGCTGACGTGGGCAGCGACAACCGCATCACGACCAGCAGCAATGGC
AATGACGGGTCTAGTCCCCCAGGAGGCGCAGTGACTACTGCCCCACATTT
GGGGAAAGGTGAGGCACTGACTTTGAAAAAGCTGCCGTGGCGAATGAATA
AATGAATGGGCGGTTTCCATCACGCCGTCGTGGCGATCACGGGTCTATGT
GCAGGTGTGGCCGTTCTACTGTCGGCGGCCTTAATCCAGCAGCACTTGAC
CCACTTCAGTAAGCCGATGGTGCAAAGCAAAATTGTCGGCATCCTCTGGA
TGGTTCCCATCTACACCGTGCAGAGCTGGTTGTCGTTGTCGTTCAAGCAC
TACGCCCTATACTTGGACATGTTTCGGGACTGCTACGAGTCTTATGTGCT
GTACCTCTTTTTGGCCCTGCTGGTAGCTTATTTAGGAGACGGCGATGAAG
GCCGCGTAGTGGAGCTGTTGGAACGCCAGCCCCGGGTAAAGCATGTGTAT
CCCTTCAAGCTCTGCTTGGGCGGGGGGGAAGTGCCACACGGCGCTGAGTT
TCTCAAGTTTTGCAAGTTTGGGACGATGCAATACATTGTTCTCAAGCCGA
CTTGTACGCTGGTTGCGGTCATTTTGTCTGCTTGTGGCTTGTACGGGGAA
GGCTCTTTTGCCCTGAACCGGTTTTGGGCTTACCAGACATTTATCATGAA
TGTCTCGGTCGGCTATGCCTTTTATTGCCTGGGCATGTTTTATGTCCTTT
TGCACGGTCCCTTGGAGGTCCACAATCCCGTGCCAAAATTCTTGTGTATC
AAAGCTGTCCTCTTCCTCTCCTTCTGGCAAGGTGTCATCATCGCTGCGCT
CGTCCGCCTCGGCCTCCTCCCGCACTTTGGAGAATGGACGACACAAAACG
TCGCCATGGCTATCCAGGAAGTTTTAATTTGTATCGAAATGATGCTGGTG
GCATTCGCGCACCGATACGCCTTCCCCGTCACCGACTACATGGGTGCCCC
TGCCATGCGGACGAGCCTGCTCTCCGATCATTTCTCACATACCTCGGCCT
TGAGAGATTTTAACGAGGTGATGCCTGTCTTGCTTCCCTCTAATTTTACA
CCTGGTTTGGCTCAGAGCATCGACCGCAGCAGTGCTGGTGGTGAAATAGC
TGACGTGGGCAGCGACAACCGCATCACGACCAGCAGCAATGGCAATGACG
GGTCTAGTCCCCCAGGAGGCGCAGTGACTACTGCCCCACATTTGGGGAAA
GGTGAGGCACTGACTTTGAAAAAGCTGCCGTGGCGAATGAATAAATGAAT
GGGCGGTTTCCATCACGCCGTCGTGGCGATCACGGGTCTATGTGCAGGTG
TGGCCGTTCTACTGTCGGCGGCCTTAATCCAGCAGCACTTGACCCACTTC
AGTAAGCCGATGGTGCAAAGCAAAATTGTCGGCATCCTCTGGATGGTTCC
CATCTACACCGTGCAGAGCTGGTTGTCGTTGTCGTTCAAGCACTACGCCC
TATACTTGGACATGTTTCGGGACTGCTACGAGTCTTATGTGCTGTACCTC
TTTTTGGCCCTGCTGGTAGCTTATTTAGGAGACGGCGATGAAGGCCGCGT
AGTGGAGCTGTTGGAACGCCAGCCCCGGGTAAAGCATGTGTATCCCTTCA
AGCTCTGCTTGGGCGGGGGGGAAGTGCCACACGGCGCTGAGTTTCTCAAG
TTTTGCAAGTTTGGGACGATGCAATACATTGTTCTCAAGCCGACTTGTAC
GCTGGTTGCGGTCATTTTGTCTGCTTGTGGCTTGTACGGGGAAGGCTCTT
TTGCCCTGAACCGGTTTTGGGCTTACCAGACATTTATCATGAATGTCTCG
GTCGGCTATGCCTTTTATTGCCTGGGCATGTTTTATGTCCTTTTGCACGG
TCCCTTGGAGGTCCACAATCCCGTGCCAAAATTCTTGTGTATCAAAGCTG
TCCTCTTCCTCTCCTTCTGGCAAGGTGTCATCATCGCTGCGCTCGTCCGC
CTCGGCCTCCTCCCGCACTTTGGAGAATGGACGACACAAAACGTCGCCAT
GGCTATCCAGGAAGTTTTAATTTGTATCGAAATGATGCTGGTGGCATTCG
CGCACCGATACGCCTTCCCCGTCACCGACTACATGGGTGCCCCTGCCATG
CGGACGAGCCTGCTCTCCGATCATTTCTCACATACCTCGGCCTTGAGAGA
TTTTAACGAGGTGATGCCTGTCTTGCTTCCCTCTAATTTTACACCTGGTT
TGGCTCAGAGCATCGACCGCAGCAGTGCTGGTGGTG
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Synonyms
Publications