jgi.p|Nanoce1779_2|593793, mRNA_6113 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593793
Unique Name	mRNA_6113
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3700
Alignment location	scaffold_14:544642..548341 -

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Properties


Property Name	Value
TranscriptId	593879
Track	FilteredModels2
ProteinId	593793

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:544642..548341 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593793	gene_6113	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593793	mRNA_6113-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6113	CDS_6113	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:544642..548341-
coding sequence from alignment at scaffold_14:544642..548341-

mRNA sequence

>mRNA_6113 ID=mRNA_6113|Name=jgi.p|Nanoce1779_2|593793|organism=Nannochloropsis oceanica|type=mRNA|length=3700bp
ACACTTCCTTTTCTCCTCTCGTTTGCGCAACAACGAGGTACAGGCCACAT
CCAACAACGGGCACTCTTCAAGAAAAGGACGAAGACCATTGACAAACAGT
TCGGCACATTTTAGCTCATACACGCACCGTGGATCCCACTTCTTCGTTTT
CTTCGCTTCCGTCGTCGTTGTCGTCGTCTTTGAGCCCTCCTTTTGAGCCT
CGCTCTCGTCCTCGTCCTCATGGGAAGCTTCCTCCATGGACGTCGTCCCG
GCAGCGGGAGCCTTGATTTCAGCGATAGCAGTACTCGTAGCACCACTACA
AGTTGCAGCTGTGACAGCGGTCGAGGCGGAGATGGAGGCGGAGGCGGAAG
AGGAGGAGGATGAGGAGGAGGAGGGGAAGGAATGGCAAGAGGAGGAGGGT
GCAGAAGATGCTGATGGCAATGCCCTTGACGCCACCTTCCTTCCCGTCTC
CACCTTGTCTTTGTCCTCGTCCTCCCCTGCTGCCGTCGAGAGTCGCATCC
TGTCATCAGTGTCTTCGACATTCATCCCTTCATCCATCTCCTCTACGTCT
TCTCCCTCCTGCTCTTCCTCACTACTGCCCTCCTCCATCAACATCATTCT
TGTTCTGGAAACATATCCCCCACCAAATGCTTCGTCGTCCTCGTCCTCGT
CCTCGGCTTCCAAAATTTCCCTTTCGAGACGCGCCACCATCGCCGTCGCT
GTCCTCCCCCTCCTCTTCCTCCTCCCTCCCATCCTACCTGACACGGCAGC
TGCCACTACCACTTCCTCCTCCTCTTCATCCTCTCCCTCTTCTTCCGCTG
CGGCTGCCCCCGTTGCTGCACCTGCGGCTTTTTCCTCTTCCTCATCCATC
ATCAGCATCTCCTGCATGTTACACAATCTCCTGTCCAAGAACTCGCGAAT
GGCTTTCACTGAGGCCAAAGGGTCGATCAAAATAGAGACGTCGGCCAGTC
CCTGAGCTTGAAGAAAAGCACGTAGCTCGCCATCGCTTTCGGTAGTTTGA
CACGACACACGAAGGTGCATCGGCTGGGCGAGTAACGTTGTAACTGTTCG
GGGGGCCCGTAAGGAGGAGGAGGAGGCAGTGGAAAAGGGCGGGGTGCGCA
GAGTGGTGGAAGAGACGAAGCACTCGGAGGCCTCGAGGCAGGACTGGAGC
TGTCGCACGAGCTTCTGAAGACCCGACTCACCTGTTCCTCCATCTCTTCC
CCCGCCCTCTCCACCTCTCCCTCTTCCTTTTGCTTCGCTCACAGACAGGT
TGATGTCGCCGCTGTATCCTCTCTCTCTGGTAGCATCAAAGGAAGAGTTC
AACACAGAGGAGACGGAAAAGGAAGAAGAGGAGGAGGACAACGAAAACGA
GCGTACGAGATCTCCGCTCTTAACGTCTAAGAGCATTTCGCCGACCATGG
CTGCGCGTTGTCGTCGCAAGAGGCGTCGAGATAGCGCCCATAGCTCTTTC
ACCCCTTCCAACCGTAAATCTCCCTCCTTCCTTCCCTCCTTCTTGGCCCC
CTCCTTCTTCTCACTCTCTTGTGAGCATGTGGTTGCCGATGCCTTGCGTT
TGCGGGGACTACCACCATCAGCAGTCACAGCGGCAGCAGCAACAGAAACA
GCGACAGCAGTCTCGTTGGCAAGCAGCGCCATGCGGGCCTCCTCTGGGCT
TAGGTCCGTCACAGTCAGATACGCATAGAGACGCGGAACCAGCCCACAAG
TCAAAATCTCGTGATTACTCAACCCTCCTCCACGATGGTGCGACGTCAGC
AGCTTGCATATGCACCCAAAAGCAGCACGACAGGCCTCCCGGGCTTCCGT
TCCTTGCTCGCGTGTGTTGCGCCATGCTTGAGTAAGGAGAGACAAGGTAT
CCGATTCTCCACCACTACCGTTCGCCTTCTCCTCCTCATACACAACCATC
GCGAGAATTTCCGCCGCTAGTCGCGTCTCAACACGTCCGTGCTCCTCCAA
AGCAAGTAAGGCCTTCGAAATCGTGCTCATCACACTTCCACTTCCGCTCC
TACTGAATCCACCCCTAGAGGACAAAGAGAAACTACCACTCCTTCCCCTC
CCATAGCCACTTGCATTGCTCTGCGACAAATCCATTAAATCCGGCACATT
TTCTCCCTTACCATCTATTCTACCCTTCTCATCCCCCTCCCGATCCTCTT
CCTCTTCCTCCTCGGCGTCCAGCATCGCCTCTGCATCCTCGTAGGCCTTC
ACAAACGCGACAGCTCTCGCCTTCATCTCTTCCCGTAATCGCTGTTGCAA
TGGAATCACACTGCTGTCACAGCAACTGCTGCTGTTTCCAGTCTCTCTCC
GTATCGCGTTCCTTCTCGCACCAGAAGGGGAAGTTGCCGATGAGGAGGAA
GGACCGGTGGAGAAGGACGACGACAGCACCAGCTCCGGGGGGCTCCCACC
ACCACCCACCAACGGTGCGGGCAAAGTCAAAGGTGACATAGGCGGCGGCG
GGGATCGTCGCAAATATCTTCCTACTATCCTTCCCTCCCTCTCCCCTCCT
TCATCTCCCATGCGTGCTTGCTCGTGTGCCTGAGCCACTACTCCCTCTCG
AGCGAAGGCCTCGGCAAAGACCATTGGTACCTTGCCCAGCAGCAGCGAGC
CCAGCTCTAACCCGGACAAAGTCGTCAATAAAGCACCGCTAGTACTACTA
CTACTGCTGCTACTGCTACCCCAGATACTGCTACCCCTCCTCCTCGTCAC
CGGCGTGCCAAGCGCAGGAGAAGCAGCAGCGGGCAGCAGACGGGCAACGA
GACTTGCAAACTGCCCAACCAAATGAGGGTGTGAGATCATCATCGGTTCG
AGCAACACTGGCCCTGACAGGTTTTGCAAAATCGTCCTTAACATTCGCGC
ACACAACGAGCGAAAGGCAGGTTTAGAAGCTGACCGAGCCAAATGGAGGA
GGTGGGGTAACATGCCTAAGAGAGGTCCAGTCAAGGCTTCCCTTGTCACC
AGCAACTCCGTCTTCGATTGAGCTAAAAACTCACTACCCTCCCCATCCAC
TACCTCACACAAAGCATCCGTCGAAAATGAGGACGAGGATGAAGGGTTAG
ATGTGCTAGTCGCAGCCGCTCCTGTTGCTGCAGCTACTGCTGCTGTAAGG
GCGGCGTCAGTAGCGACGCGGGCAGAGATCCAACCATAAGGGGTGCGATA
ACGTCGGGCGCCAGACATAGAGAAAGCCCAGCCCGAGAAAGGCAACACTG
TACCCAGTTCCACAACCATCGAACTGCTGATGTTGTTGCTACTGCCGGAA
GTGCTGCTATTCGTGGCGGCAATAGTAGTGAGGCGACGGGGGTCAAGCTC
AGCAGTGAGGATGGCTCCGTGAGGGTGTACAACGCAGACAATTCCAGGCG
TGCCGTGCAAACACGAGGCACTGGCGGATGCAGCAGCTACTGACGAGGAA
GGAGGAGGAGCAATTGAAGAGGTGGAGGAAGGAAAGGAGGAGGGAGAGGC
GGAATCTCCTCCTCCTGATGCTGATGATGCGTCTCTCTGCTGCTTGTCCA
TAGGGTGTACAGAGGGAGGCAACAGGGGTAGCAAGTCCAATAAGCAAGCG
AAAAGTGTCGCGGTAGTCATCTGAGAAAACATGGACGCTCCACACCCCAC
CCGCGGAGACGAAGGACCAAACGACAACGACCGACTTCGACGACGTCCTC
CCCCTCCCATCCCTCCCGACGGTGGAGAGCCCACCAAGAATCCCCCTTCC

protein sequence of jgi.p|Nanoce1779_2|593793

>mRNA_6113-protein ID=mRNA_6113-protein|Name=jgi.p|Nanoce1779_2|593793|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MDVVPAAGALISAIAVLVAPLQVAAVTAVEAEMEAEAEEEEDEEEEGKEW
QEEEGAEDADGNALDATFLPVSTLSLSSSSPAAVESRILSSVSSTFIPSS
ISSTSSPSCSSSLLPSSINIILVLETYPPPNASSSSSSSSASKISLSRRA
TIAVAVLPLLFLLPPILPDTAAATTTSSSSSSSPSSSAAAAPVAAPAAFS
SSSSIISISCMLHNLLSKNSRMAFTEAKGSIKIETSASP*

mRNA from alignment at scaffold_14:544642..548341-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6113 ID=mRNA_6113|Name=jgi.p|Nanoce1779_2|593793|organism=Nannochloropsis oceanica|type=mRNA|length=3700bp|location=Sequence derived from alignment at scaffold_14:544642..548341- (Nannochloropsis oceanica)
ACACTTCCTTTTCTCCTCTCGTTTGCGCAACAACGAGGTACAGGCCACAT
CCAACAACGGGCACTCTTCAAGAAAAGGACGAAGACCATTGACAAACAGT
TCGGCACATTTTAGCTCATACACGCACCGTGGATCCCACTTCTTCGTTTT
CTTCGCTTCCGTCGTCGTTGTCGTCGTCTTTGAGCCCTCCTTTTGAGCCT
CGCTCTCGTCCTCGTCCTCATGGGAAGCTTCCTCCATGGACGTCGTCCCG
GCAGCGGGAGCCTTGATTTCAGCGATAGCAGTACTCGTAGCACCACTACA
AGTTGCAGCTGTGACAGCGGTCGAGGCGGAGATGGAGGCGGAGGCGGAAG
AGGAGGAGGATGAGGAGGAGGAGGGGAAGGAATGGCAAGAGGAGGAGGGT
GCAGAAGATGCTGATGGCAATGCCCTTGACGCCACCTTCCTTCCCGTCTC
CACCTTGTCTTTGTCCTCGTCCTCCCCTGCTGCCGTCGAGAGTCGCATCC
TGTCATCAGTGTCTTCGACATTCATCCCTTCATCCATCTCCTCTACGTCT
TCTCCCTCCTGCTCTTCCTCACTACTGCCCTCCTCCATCAACATCATTCT
TGTTCTGGAAACATATCCCCCACCAAATGCTTCGTCGTCCTCGTCCTCGT
CCTCGGCTTCCAAAATTTCCCTTTCGAGACGCGCCACCATCGCCGTCGCT
GTCCTCCCCCTCCTCTTCCTCCTCCCTCCCATCCTACCTGACACGGCAGC
TGCCACTACCACTTCCTCCTCCTCTTCATCCTCTCCCTCTTCTTCCGCTG
CGGCTGCCCCCGTTGCTGCACCTGCGGCTTTTTCCTCTTCCTCATCCATC
ATCAGCATCTCCTGCATGTTACACAATCTCCTGTCCAAGAACTCGCGAAT
GGCTTTCACTGAGGCCAAAGGGTCGATCAAAATAGAGACGTCGGCCAGTC
CCTGAGCTTGAAGAAAAGCACGTAGCTCGCCATCGCTTTCGGTAGTTTGA
CACGACACACGAAGGTGCATCGGCTGGGCGAGTAACGTTGTAACTGTTCG
GGGGGCCCGTAAGGAGGAGGAGGAGGCAGTGGAAAAGGGCGGGGTGCGCA
GAGTGGTGGAAGAGACGAAGCACTCGGAGGCCTCGAGGCAGGACTGGAGC
TGTCGCACGAGCTTCTGAAGACCCGACTCACCTGTTCCTCCATCTCTTCC
CCCGCCCTCTCCACCTCTCCCTCTTCCTTTTGCTTCGCTCACAGACAGGT
TGATGTCGCCGCTGTATCCTCTCTCTCTGGTAGCATCAAAGGAAGAGTTC
AACACAGAGGAGACGGAAAAGGAAGAAGAGGAGGAGGACAACGAAAACGA
GCGTACGAGATCTCCGCTCTTAACGTCTAAGAGCATTTCGCCGACCATGG
CTGCGCGTTGTCGTCGCAAGAGGCGTCGAGATAGCGCCCATAGCTCTTTC
ACCCCTTCCAACCGTAAATCTCCCTCCTTCCTTCCCTCCTTCTTGGCCCC
CTCCTTCTTCTCACTCTCTTGTGAGCATGTGGTTGCCGATGCCTTGCGTT
TGCGGGGACTACCACCATCAGCAGTCACAGCGGCAGCAGCAACAGAAACA
GCGACAGCAGTCTCGTTGGCAAGCAGCGCCATGCGGGCCTCCTCTGGGCT
TAGGTCCGTCACAGTCAGATACGCATAGAGACGCGGAACCAGCCCACAAG
TCAAAATCTCGTGATTACTCAACCCTCCTCCACGATGGTGCGACGTCAGC
AGCTTGCATATGCACCCAAAAGCAGCACGACAGGCCTCCCGGGCTTCCGT
TCCTTGCTCGCGTGTGTTGCGCCATGCTTGAGTAAGGAGAGACAAGGTAT
CCGATTCTCCACCACTACCGTTCGCCTTCTCCTCCTCATACACAACCATC
GCGAGAATTTCCGCCGCTAGTCGCGTCTCAACACGTCCGTGCTCCTCCAA
AGCAAGTAAGGCCTTCGAAATCGTGCTCATCACACTTCCACTTCCGCTCC
TACTGAATCCACCCCTAGAGGACAAAGAGAAACTACCACTCCTTCCCCTC
CCATAGCCACTTGCATTGCTCTGCGACAAATCCATTAAATCCGGCACATT
TTCTCCCTTACCATCTATTCTACCCTTCTCATCCCCCTCCCGATCCTCTT
CCTCTTCCTCCTCGGCGTCCAGCATCGCCTCTGCATCCTCGTAGGCCTTC
ACAAACGCGACAGCTCTCGCCTTCATCTCTTCCCGTAATCGCTGTTGCAA
TGGAATCACACTGCTGTCACAGCAACTGCTGCTGTTTCCAGTCTCTCTCC
GTATCGCGTTCCTTCTCGCACCAGAAGGGGAAGTTGCCGATGAGGAGGAA
GGACCGGTGGAGAAGGACGACGACAGCACCAGCTCCGGGGGGCTCCCACC
ACCACCCACCAACGGTGCGGGCAAAGTCAAAGGTGACATAGGCGGCGGCG
GGGATCGTCGCAAATATCTTCCTACTATCCTTCCCTCCCTCTCCCCTCCT
TCATCTCCCATGCGTGCTTGCTCGTGTGCCTGAGCCACTACTCCCTCTCG
AGCGAAGGCCTCGGCAAAGACCATTGGTACCTTGCCCAGCAGCAGCGAGC
CCAGCTCTAACCCGGACAAAGTCGTCAATAAAGCACCGCTAGTACTACTA
CTACTGCTGCTACTGCTACCCCAGATACTGCTACCCCTCCTCCTCGTCAC
CGGCGTGCCAAGCGCAGGAGAAGCAGCAGCGGGCAGCAGACGGGCAACGA
GACTTGCAAACTGCCCAACCAAATGAGGGTGTGAGATCATCATCGGTTCG
AGCAACACTGGCCCTGACAGGTTTTGCAAAATCGTCCTTAACATTCGCGC
ACACAACGAGCGAAAGGCAGGTTTAGAAGCTGACCGAGCCAAATGGAGGA
GGTGGGGTAACATGCCTAAGAGAGGTCCAGTCAAGGCTTCCCTTGTCACC
AGCAACTCCGTCTTCGATTGAGCTAAAAACTCACTACCCTCCCCATCCAC
TACCTCACACAAAGCATCCGTCGAAAATGAGGACGAGGATGAAGGGTTAG
ATGTGCTAGTCGCAGCCGCTCCTGTTGCTGCAGCTACTGCTGCTGTAAGG
GCGGCGTCAGTAGCGACGCGGGCAGAGATCCAACCATAAGGGGTGCGATA
ACGTCGGGCGCCAGACATAGAGAAAGCCCAGCCCGAGAAAGGCAACACTG
TACCCAGTTCCACAACCATCGAACTGCTGATGTTGTTGCTACTGCCGGAA
GTGCTGCTATTCGTGGCGGCAATAGTAGTGAGGCGACGGGGGTCAAGCTC
AGCAGTGAGGATGGCTCCGTGAGGGTGTACAACGCAGACAATTCCAGGCG
TGCCGTGCAAACACGAGGCACTGGCGGATGCAGCAGCTACTGACGAGGAA
GGAGGAGGAGCAATTGAAGAGGTGGAGGAAGGAAAGGAGGAGGGAGAGGC
GGAATCTCCTCCTCCTGATGCTGATGATGCGTCTCTCTGCTGCTTGTCCA
TAGGGTGTACAGAGGGAGGCAACAGGGGTAGCAAGTCCAATAAGCAAGCG
AAAAGTGTCGCGGTAGTCATCTGAGAAAACATGGACGCTCCACACCCCAC
CCGCGGAGACGAAGGACCAAACGACAACGACCGACTTCGACGACGTCCTC
CCCCTCCCATCCCTCCCGACGGTGGAGAGCCCACCAAGAATCCCCCTTCC

Coding sequence (CDS) from alignment at scaffold_14:544642..548341-

>mRNA_6113 ID=mRNA_6113|Name=jgi.p|Nanoce1779_2|593793|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_14:544642..548341- (Nannochloropsis oceanica)
ATGGACGTCGTCCCGGCAGCGGGAGCCTTGATTTCAGCGATAGCAGTACT
CGTAGCACCACTACAAGTTGCAGCTGTGACAGCGGTCGAGGCGGAGATGG
AGGCGGAGGCGGAAGAGGAGGAGGATGAGGAGGAGGAGGGGAAGGAATGG
CAAGAGGAGGAGGGTGCAGAAGATGCTGATGGCAATGCCCTTGACGCCAC
CTTCCTTCCCGTCTCCACCTTGTCTTTGTCCTCGTCCTCCCCTGCTGCCG
TCGAGAGTCGCATCCTGTCATCAGTGTCTTCGACATTCATCCCTTCATCC
ATCTCCTCTACGTCTTCTCCCTCCTGCTCTTCCTCACTACTGCCCTCCTC
CATCAACATCATTCTTGTTCTGGAAACATATCCCCCACCAAATGCTTCGT
CGTCCTCGTCCTCGTCCTCGGCTTCCAAAATTTCCCTTTCGAGACGCGCC
ACCATCGCCGTCGCTGTCCTCCCCCTCCTCTTCCTCCTCCCTCCCATCCT
ACCTGACACGGCAGCTGCCACTACCACTTCCTCCTCCTCTTCATCCTCTC
CCTCTTCTTCCGCTGCGGCTGCCCCCGTTGCTGCACCTGCGGCTTTTTCC
TCTTCCTCATCCATCATCAGCATCTCCTGCATGTTACACAATCTCCTGTC
CAAGAACTCGCGAATGGCTTTCACTGAGGCCAAAGGGTCGATCAAAATAG
AGACGTCGGCCAGTCCCTGA

Synonyms

Publications