jgi.p|Nanoce1779_2|529716, mRNA_6112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529716
Unique NamemRNA_6112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length402
Alignment locationscaffold_14:543485..543886 +

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Properties
Property NameValue
TranscriptId529802
TrackFilteredModels2
ProteinId529716
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:543485..543886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529716gene_6112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529716mRNA_6112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6112CDS_6112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6112 ID=mRNA_6112|Name=jgi.p|Nanoce1779_2|529716|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
ATGCATGGTGGTGGGGGAGGAGAAGGAGGGAGAGGAGAAGGAGGGGGAGG
AGGAGCAGCGCAGCAGCACTTGAATGACCTGTTGCAGTTCCTCGACTCGC
CCGACCCATCGCTGCAGCTCATGTCTACCAAAATTATCACGCAAGTCTTT
GATCAAGTACCGCCTTGCATCGCCTTGGCGGTGCAAGCCGGCATTGCGGG
CATGTTAACCGAAAAATTGCTGAGCATTGAATGGATGGACGTGGCCGAAC
AAGCAATCGGCGCGTTGGAGCATGTCGCACGCTACTGCCCCTGCTCCCTC
CTCCCCTGTGGAACACTCGGAGCCCTACTTGCCTTTCTGGATTTTTACCC
CCTAAATGTTCAACGGTTGGCGCTTAGAACCGTGGCCCATATTTGTAGCA
GT
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protein sequence of jgi.p|Nanoce1779_2|529716

>mRNA_6112-protein ID=mRNA_6112-protein|Name=jgi.p|Nanoce1779_2|529716|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MHGGGGGEGGRGEGGGGGAAQQHLNDLLQFLDSPDPSLQLMSTKIITQVF
DQVPPCIALAVQAGIAGMLTEKLLSIEWMDVAEQAIGALEHVARYCPCSL
LPCGTLGALLAFLDFYPLNVQRLALRTVAHICSS
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mRNA from alignment at scaffold_14:543485..543886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6112 ID=mRNA_6112|Name=jgi.p|Nanoce1779_2|529716|organism=Nannochloropsis oceanica|type=mRNA|length=402bp|location=Sequence derived from alignment at scaffold_14:543485..543886+ (Nannochloropsis oceanica)
ATGCATGGTGGTGGGGGAGGAGAAGGAGGGAGAGGAGAAGGAGGGGGAGG
AGGAGCAGCGCAGCAGCACTTGAATGACCTGTTGCAGTTCCTCGACTCGC
CCGACCCATCGCTGCAGCTCATGTCTACCAAAATTATCACGCAAGTCTTT
GATCAAGTACCGCCTTGCATCGCCTTGGCGGTGCAAGCCGGCATTGCGGG
CATGTTAACCGAAAAATTGCTGAGCATTGAATGGATGGACGTGGCCGAAC
AAGCAATCGGCGCGTTGGAGCATGTCGCACGCTACTGCCCCTGCTCCCTC
CTCCCCTGTGGAACACTCGGAGCCCTACTTGCCTTTCTGGATTTTTACCC
CCTAAATGTTCAACGGTTGGCGCTTAGAACCGTGGCCCATATTTGTAGCA
GT
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Coding sequence (CDS) from alignment at scaffold_14:543485..543886+

>mRNA_6112 ID=mRNA_6112|Name=jgi.p|Nanoce1779_2|529716|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_14:543485..543886+ (Nannochloropsis oceanica)
ATGCATGGTGGTGGGGGAGGAGAAGGAGGGAGAGGAGAAGGAGGGGGAGG
AGGAGCAGCGCAGCAGCACTTGAATGACCTGTTGCAGTTCCTCGACTCGC
CCGACCCATCGCTGCAGCTCATGTCTACCAAAATTATCACGCAAGTCTTT
GATCAAGTACCGCCTTGCATCGCCTTGGCGGTGCAAGCCGGCATTGCGGG
CATGTTAACCGAAAAATTGCTGAGCATTGAATGGATGGACGTGGCCGAAC
AAGCAATCGGCGCGTTGGAGCATGTCGCACGCTACTGCCCCTGCTCCCTC
CTCCCCTGTGGAACACTCGGAGCCCTACTTGCCTTTCTGGATTTTTACCC
CCTAAATGTTCAACGGTTGGCGCTTAGAACCGTGGCCCATATTTGTAGCA
GT
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Synonyms
Publications