jgi.p|Nanoce1779_2|671762, mRNA_6110 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671762
Unique Name	mRNA_6110
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1503
Alignment location	scaffold_14:536554..538878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671848
Track	FilteredModels2
ProteinId	671762

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:536554..538878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671762	gene_6110	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671762	mRNA_6110-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6110	CDS_6110	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:536554..538878+
coding sequence from alignment at scaffold_14:536554..538878+

mRNA sequence

>mRNA_6110 ID=mRNA_6110|Name=jgi.p|Nanoce1779_2|671762|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
AAATCATTCGCGTGCTGTGTTTGCGCAGCAGCAGCTTCAGCAGCACCAGC
AACGGCGAGCTTCTTCTTCCTTCTTTCCATTTCCCCCTTCCTCGCGCTCA
ATCCGCCTAGCTTTCCTCATCCACCAACCAATAAATCTGAGGATGTCAAC
AATTATATATCGTCCCCTCTCCAACGTATTTCTGTGGTATTACCACAGCT
CAATACCATCGCCATGTTTTTGGGGATCGATCAGAACAAGGAACTTGAAG
GATTTGAAGCAAAAATGCTTGCCGACCTGGCAATACGATGTCATTGTTCG
TTCAGCTATCGCCTGCCAAGCCAAACTTCGCCGGAGGTAGACTTACCCTT
CCTAAAACAAGAGCTCGCGCGCTTCGACCCCACAGTGCCAATTGAATCCG
CATCCACACCTCCTGCTTCCTGGTTCACCCACCCGGCCTTCCATGCCTTG
GAAATGGCGAGCGTCTTTGCTGAGAATCCGCTATGTGTTGGCAGCACTCT
GCACATTCCTCGCCCCGGGGACTACTTCTGCGGGCAGGTCGGCACGCATC
CGTTCATTGTCTTGCGAGATACCGTAGGGAAGATAAAGGCATTTTATAAT
GTTTGTCGCCATAAGGGCATGCGGCTTGTCGCGGGCGACAAAGGGCAGAT
AGACAAGACCACCTTTGCCTGTCCGTACCATGGGTGGGAATATCGATTGG
ATGGACGCTTGGCCAAGGCGACGCGTATCAGGGGCATTCAAAACTTTTCC
CCAAAAGACTACGGATTAATAGAAATTCCACTCCACACCTGGGGACCATT
GATTTTCCTTCAGTTCGGTCGCCGGGTTGGCAAGAGCAGGAGCAGCAGCA
GCGAGGGAGGGGTGATGGAGGGGGAGGGGAGGTATTCTCTGGCTCACTTG
ACGCCATTGCGGGAGAGGCTGGATGCAGAGTTTGGATTTAGCACAGGATT
GCGACATGTTGCACGACGGATGTACAGATTGAAGCAGGCGAGAGAAGGGG
GGGGGAGAGAAGCAGGAGGAGAAGCAGGAGGAGGAAGGGTGGGAGGGAGT
GGTCAAGAACGGGTGGGAGCAGCAGCTCTGTATGCACATGTTTATCCTTC
CTTGATGCTGAATCGTTATGGGCCTTGGATGGACATTAACCTGCTTTTTC
CTTTGTCTCACAACACCTCCGAAGTGGTTTTTGATTACTTCTTGGAGGAG
GCCTTCATTGCAAGGTTAGAGGGGGAAGAGGGAGGGAGGGAGGGAGGGCT
GGAGAGCTTTGTCAGGGAGTCATTGGAGGCCTCGGACGAGGTGCAGAAGG
AGGATATCTATTTGTGTGAGAATGTTCAGATTGGTTTAGAGTCGGCAGGG
AGGGAGGGAGGGAGGGAAGGGGGGTATGATCGGGGGAGGTATGCTCCGAA
GGTGGAGTATTTGGATCATGCTTTCCATCAGTGGCTGGCAAGGGATCTGG
GGGAGGCCGTAAAGAAGATGGAAAAGGGAGAAAAGGAGGGAGGGGTGGGC
TGA

protein sequence of jgi.p|Nanoce1779_2|671762

>mRNA_6110-protein ID=mRNA_6110-protein|Name=jgi.p|Nanoce1779_2|671762|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MFLGIDQNKELEGFEAKMLADLAIRCHCSFSYRLPSQTSPEVDLPFLKQE
LARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPR
PGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTT
FACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQ
FGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVA
RRMYRLKQAREGGGREAGGEAGGGRVGGSGQERVGAAALYAHVYPSLMLN
RYGPWMDINLLFPLSHNTSEVVFDYFLEEAFIARLEGEEGGREGGLESFV
RESLEASDEVQKEDIYLCENVQIGLESAGREGGREGGYDRGRYAPKVEYL
DHAFHQWLARDLGEAVKKMEKGEKEGGVG*

mRNA from alignment at scaffold_14:536554..538878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6110 ID=mRNA_6110|Name=jgi.p|Nanoce1779_2|671762|organism=Nannochloropsis oceanica|type=mRNA|length=2325bp|location=Sequence derived from alignment at scaffold_14:536554..538878+ (Nannochloropsis oceanica)
AAATCATTCGCGTGCTGTGTTTGCGCAGCAGCAGCTTCAGCAGCACCAGC
AACGGCGAGCTTCTTCTTCCTTCTTTCCATTTCCCCCTTCCTCGCGCTCA
ATCCGCCTAGCTTTCCTCATCCACCAACCAATAAATCTGAGGATGTCAAC
AATTATATATCGTCCCCTCTCCAACGTATTTCTGTGGTATTACCACAGCT
CAATACCATCGCCATGTTTTTGGGGATCGTAAATTGACGTGACGCCGTAC
ATCTCCTTCATCCTCTATCTCATGCACGTCCTGTGCACCGCAAAAAGTTT
CATTTTTGCAGTGCCAAAGGTGGTTCGTTCACGTCGTTTTCCCCTCCTGC
ATGATTCCATTCTTCTTGTCCTCCATTGCCCTCCAATGCCCTTGTACCCC
CCAGGATCAGAACAAGGAACTTGAAGGATTTGAAGCAAAAATGCTTGCCG
ACCTGGCAATACGATGTCATTGTTCGTTCAGCTATCGCCTGCCAAGCCAA
ACTTCGCCGGAGGTAGTAGGTGAATCCTGTGCTTCAGTATGGTGGCGGAA
GCGTGAAATTGGAAAGCGGCGGTGGTGTGAAACAATCGCCGCCGCGAGCG
CCGTTTCTCCATCTCACTAGTTACTACACACGATCGACTGACACCAAATA
TCTCCCCCTGCCACAGCATGAAACCATTCTTCACGGCCTTATCCAGGCGC
CTCGTCAGTTCTCGCTGCTTCAGGACTCCTCCATCCTCCCCTTCCTCCCT
CGGTCGTCCACTCTCCACCTTGCTTAAGGACTTACCCTTCCTAAAACAAG
AGCTCGCGCGCTTCGACCCCACAGTGCCAATTGAATCCGCATCCACACCT
CCTGCTTCCTGGTTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAG
CGTCTTTGCTGAGAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTC
GCCCCGGGGACTACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTC
TTGCGAGATACCGTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCA
TAAGGGCATGCGGCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCA
CCTTTGCCTGTCCGTACCATGGGTGGGAATATCGATTGGATGGACGCTTG
GCCAAGGCGACGCGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTA
CGGATTAATAGAAATTCCACTCCACACCTGGGGACCATTGATTTTCCTTC
AGTTCGGTCGCCGGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGG
GTGATGGAGGGGGAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCG
GGAGAGGCTGGATGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTG
CACGACGGATGTACAGATTGAAGGTAAGCAGACGGTGGGAGGATAGCACG
TCGTCGATACTCGCCTTTGCTTGCTTTAACTCTTGCCTTCTGCTCGCTGT
CGTCGGTCCTGTTTCCCCCTTTCTCTGGCTGCGACGAAGCCATTCTCACC
ATTCCCTCGTCTCTTTTTGACTCCCTCTCTTACTTCTTTTTTTCCTTCCT
CCAAGTGCAATCACAAAGTCGTGAGTGATAATTTCCTCGACAACGCTTAC
CACGTCCCATACGCCCACCCTGCCCTCGGCCAGGCCCTCGACCTCGCCTC
CTACTCCGCCACCCTACACGACCGTTACTCCATCCAGTCATGCAAAGGCG
CTACCCCTCTTTCCTCACTTCCTCCTTTTCACTGCTCTCCTGTGGACAAT
CACGAGCAGGCGAGAGAAGGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGG
AGGAGGAAGGGTGGGAGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTC
TGTATGCACATGTTTATCCTTCCTTGATGCTGAATCGTTATGGGCCTTGG
ATGGACATTAACCTGCTTTTTCCTTTGTCTCACAACACCTCCGAAGTGGT
TTTTGATTACTTCTTGGAGGAGGCCTTCATTGCAAGGTTAGAGGGGGAAG
AGGGAGGGAGGGAGGGAGGGCTGGAGAGCTTTGTCAGGGAGTCATTGGAG
GCCTCGGACGAGGTGCAGAAGGAGGATATCTATTTGTGTGAGAATGTTCA
GATTGGTTTAGAGTCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGGGTATG
ATCGGGGGAGGTATGCTCCGAAGGTGGAGTATTTGGATCATGCTTTCCAT
CAGTGGCTGGCAAGGGATCTGGGGGAGGCCGTAAAGAAGATGGAAAAGGG
AGAAAAGGAGGGAGGGGTGGGCTGA

Coding sequence (CDS) from alignment at scaffold_14:536554..538878+

>mRNA_6110 ID=mRNA_6110|Name=jgi.p|Nanoce1779_2|671762|organism=Nannochloropsis oceanica|type=CDS|length=5160bp|location=Sequence derived from alignment at scaffold_14:536554..538878+ (Nannochloropsis oceanica)
ATGTTTTTGGGGATCGATCAGAACAAGGAACTTGAAGGATTTGAAGCAAA
AATGCTTGCCGACCTGGCAATACGATGTCATTGTTCGTTCAGCTATCGCC
TGCCAAGCCAAACTTCGCCGGAGGTAGACTTACCCTTCCTAAAACAAGAG
CTCGCGCGCTTCGACCCCACAGTGCCAATTGAATCCGCATCCACACCTCC
TGCTTCCTGGTTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCG
TCTTTGCTGAGAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTCGC
CCCGGGGACTACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTT
GCGAGATACCGTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCATA
AGGGCATGCGGCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCACC
TTTGCCTGTCCGTACCATGGGTGGGAATATCGATTGGATGGACGCTTGGC
CAAGGCGACGCGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTACG
GATTAATAGAAATTCCACTCCACACCTGGGGACCATTGATTTTCCTTCAG
TTCGGTCGCCGGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGT
GATGGAGGGGGAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCGGG
AGAGGCTGGATGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTGCA
CGACGGATGTACAGATTGAAGCAGGCGAGAGAAGGGGGGGGGAGAGAAGC
AGGAGGAGAAGCAGGAGGAGGAAGGGTGGGAGGGAGTGGTCAAGAACGGG
TGGGAGCAGCAGCTCTGTATGCACATGTTTATCCTTCCTTGATGCTGAAT
CGTTATGGGCCTTGGATGGACATTAACCTGCTTTTTCCTTTGTCTCACAA
CACCTCCGAAGTGGTTTTTGATTACTTCTTGGAGGAGGCCTTCATTGCAA
GGTTAGAGGGGGAAGAGGGAGGGAGGGAGGGAGGGCTGGAGAGCTTTGTC
AGGGAGTCATTGGAGGCCTCGGACGAGGTGCAGAAGGAGGATATCTATTT
GTGTGAGAATGTTCAGATTGGTTTAGAGTCGGCAGGGAGGGAGGGAGGGA
GGGAAGGGGGGTATGATCGGGGGAGGTATGCTCCGAAGGTGGAGTATTTG
GATCATGCTTTCCATCAGTGGCTGGCAAGGGATCTGGGGGAGGCCGTAAA
GAAGATGGAAAAGGGAGAAAAGGAGGGAGGGGTGGGCTGAATGTTTTTGG
GGATCGATCAGAACAAGGAACTTGAAGGATTTGAAGCAAAAATGCTTGCC
GACCTGGCAATACGATGTCATTGTTCGTTCAGCTATCGCCTGCCAAGCCA
AACTTCGCCGGAGGTAGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCT
TCGACCCCACAGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGG
TTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGA
GAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACT
ACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACC
GTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCG
GCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTC
CGTACCATGGGTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACG
CGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGA
AATTCCACTCCACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCC
GGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGG
GAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGA
TGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGT
ACAGATTGAAGCAGGCGAGAGAAGGGGGGGGGAGAGAAGCAGGAGGAGAA
GCAGGAGGAGGAAGGGTGGGAGGGAGTGGTCAAGAACGGGTGGGAGCAGC
AGCTCTGTATGCACATGTTTATCCTTCCTTGATGCTGAATCGTTATGGGC
CTTGGATGGACATTAACCTGCTTTTTCCTTTGTCTCACAACACCTCCGAA
GTGGTTTTTGATTACTTCTTGGAGGAGGCCTTCATTGCAAGGTTAGAGGG
GGAAGAGGGAGGGAGGGAGGGAGGGCTGGAGAGCTTTGTCAGGGAGTCAT
TGGAGGCCTCGGACGAGGTGCAGAAGGAGGATATCTATTTGTGTGAGAAT
GTTCAGATTGGTTTAGAGTCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGG
GTATGATCGGGGGAGGTATGCTCCGAAGGTGGAGTATTTGGATCATGCTT
TCCATCAGTGGCTGGCAAGGGATCTGGGGGAGGCCGTAAAGAAGATGGAA
AAGGGAGAAAAGGAGGGAGGGGTGGGCTGAATGTTTTTGGGGATCGATCA
GAACAAGGAACTTGAAGGATTTGAAGCAAAAATGCTTGCCGACCTGGCAA
TACGATGTCATTGTTCGTTCAGCTATCGCCTGCCAAGCCAAACTTCGCCG
GAGGTAGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCTTCGACCCCAC
AGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGGTTCACCCACC
CGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGAGAATCCGCTA
TGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACTACTTCTGCGG
GCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACCGTAGGGAAGA
TAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCGGCTTGTCGCG
GGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTCCGTACCATGG
GTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACGCGTATCAGGG
GCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGAAATTCCACTC
CACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCCGGGTTGGCAA
GAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGGGAGGGGAGGT
ATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGATGCAGAGTTT
GGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGTACAGATTGAA
GCAGGCGAGAGAAGGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGGAGGAG
GAAGGGTGGGAGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTCTGTAT
GCACATGTTTATCCTTCCTTGATGCTGAATCGTTATGGGCCTTGGATGGA
CATTAACCTGCTTTTTCCTTTGTCTCACAACACCTCCGAAGTGGTTTTTG
ATTACTTCTTGGAGGAGGCCTTCATTGCAAGGTTAGAGGGGGAAGAGGGA
GGGAGGGAGGGAGGGCTGGAGAGCTTTGTCAGGGAGTCATTGGAGGCCTC
GGACGAGGTGCAGAAGGAGGATATCTATTTGTGTGAGAATGTTCAGATTG
GTTTAGAGTCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGGGTATGATCGG
GGGAGGTATGCTCCGAAGGTGGAGTATTTGGATCATGCTTTCCATCAGTG
GCTGGCAAGGGATCTGGGGGAGGCCGTAAAGAAGATGGAAAAGGGAGAAA
AGGAGGGAGGGGTGGGCTGAATGTTTTTGGGGATCGATCAGAACAAGGAA
CTTGAAGGATTTGAAGCAAAAATGCTTGCCGACCTGGCAATACGATGTCA
TTGTTCGTTCAGCTATCGCCTGCCAAGCCAAACTTCGCCGGAGGTAGACT
TACCCTTCCTAAAACAAGAGCTCGCGCGCTTCGACCCCACAGTGCCAATT
GAATCCGCATCCACACCTCCTGCTTCCTGGTTCACCCACCCGGCCTTCCA
TGCCTTGGAAATGGCGAGCGTCTTTGCTGAGAATCCGCTATGTGTTGGCA
GCACTCTGCACATTCCTCGCCCCGGGGACTACTTCTGCGGGCAGGTCGGC
ACGCATCCGTTCATTGTCTTGCGAGATACCGTAGGGAAGATAAAGGCATT
TTATAATGTTTGTCGCCATAAGGGCATGCGGCTTGTCGCGGGCGACAAAG
GGCAGATAGACAAGACCACCTTTGCCTGTCCGTACCATGGGTGGGAATAT
CGATTGGATGGACGCTTGGCCAAGGCGACGCGTATCAGGGGCATTCAAAA
CTTTTCCCCAAAAGACTACGGATTAATAGAAATTCCACTCCACACCTGGG
GACCATTGATTTTCCTTCAGTTCGGTCGCCGGGTTGGCAAGAGCAGGAGC
AGCAGCAGCGAGGGAGGGGTGATGGAGGGGGAGGGGAGGTATTCTCTGGC
TCACTTGACGCCATTGCGGGAGAGGCTGGATGCAGAGTTTGGATTTAGCA
CAGGATTGCGACATGTTGCACGACGGATGTACAGATTGAAGCAGGCGAGA
GAAGGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGGAGGAGGAAGGGTGGG
AGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTCTGTATGCACATGTTT
ATCCTTCCTTGATGCTGAATCGTTATGGGCCTTGGATGGACATTAACCTG
CTTTTTCCTTTGTCTCACAACACCTCCGAAGTGGTTTTTGATTACTTCTT
GGAGGAGGCCTTCATTGCAAGGTTAGAGGGGGAAGAGGGAGGGAGGGAGG
GAGGGCTGGAGAGCTTTGTCAGGGAGTCATTGGAGGCCTCGGACGAGGTG
CAGAAGGAGGATATCTATTTGTGTGAGAATGTTCAGATTGGTTTAGAGTC
GGCAGGGAGGGAGGGAGGGAGGGAAGGGGGGTATGATCGGGGGAGGTATG
CTCCGAAGGTGGAGTATTTGGATCATGCTTTCCATCAGTGGCTGGCAAGG
GATCTGGGGGAGGCCGTAAAGAAGATGGAAAAGGGAGAAAAGGAGGGAGG
GGTGGGCTGA

Synonyms

Publications