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Properties
| Property Name | Value |
|---|
| TranscriptId | 573594 |
| Track | FilteredModels2 |
| ProteinId | 573508 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:563..2641 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_611 ID=mRNA_611|Name=jgi.p|Nanoce1779_2|573508|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp
CTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTCCTCCTATCTTCGC
TCCCTCCCTGCGCCCGGCGTGGCTTCGTGCTGGGCCGGAGGGAGGGGGGG
GGTAAGGGCAAGGGGGAGGAGGAGGAGGAGAGGGCATTCATGGCAGTTGC
AAGGGCAATGAGGACCACTGCGTCCTTTGGCCTGGTGGGGAAAGAGGCGC
TCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGCAACCCGCCTCTCAGCCCT
TCGGGCTTCTTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGA
GCCACCCGTCTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCC
CACTCTCCCTCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAAC
AATCACCCCCCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTG
GCAGCTTGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCG
TTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTAC
CTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGT
GAGGTGGGCTGGCTTTGTCAAGAATTTCGGCATCGCCAAGACGGAGCTCC
CCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGATACTGGGCCATGGGA
GGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTTGTTGAAGGGAGGGC
GGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGTGGTGGAGGGCAAGG
TCCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGG
AGCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTT
AGGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGG
AGGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAGGCGGGTGGAGG
GTAAGGCAGAGCAGGAGGATGAGACGAAGAAGACAGGGAAAGTAGGGAGG
GAGGAGGGTGTGTTGGATGATAAAGAGAAGGATGCAGGGGCGAAGAAAAC
GAGTAGGCGGACTCGTGACAGAGGGACTCTAAGAGGGAGGAGGAGAGGGT
AATGGAAGGCGCCATGTTGCCGAGAACACGAAATGCACGTCAAAAATATA
ATGAAAATAGCAATCACAGATCCCCGTTGGGTTAAGGTTGTGTTTTCTTG
TTTTTATCATGCCGTCATCTATTGAACTTTCGAAAGGAGGAAAAGAAAGG
GGCTGTCGAAAGCATGTATTAACCCCTGCATTTTTAATGTCTTGGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|573508 >mRNA_611-protein ID=mRNA_611-protein|Name=jgi.p|Nanoce1779_2|573508|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MAVARAMRTTASFGLVGKEALEKGKGKQLFSNPPLSPSGFFLAKVEGGKE
RGEEPPVYFPVSSSSSSTSSPLSLTDAKTIQQWVRSNNHPPPLSLGRTQL
PAAWQLGQVIAVVDPNGSPAVTEAYLEMLKDMARLPYLQPYVQRDLVMGW
LDGVRWAGFVKNFGIAKTELPSFFVLDFPSERYWAMGGDGGMGSKGMEFV
EGRAAMESMGAFLVDVVEGKVPAKRQGFLGGMPAALWSRLSDMWPWSLGL
LLPLGWLIALCLGGGLGNDEEEEELRRERVGG* back to topmRNA from alignment at scaffold_2:563..2641- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_611 ID=mRNA_611|Name=jgi.p|Nanoce1779_2|573508|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at scaffold_2:563..2641- (Nannochloropsis oceanica)
CTCCCGCCCTCCCCCTTCCCACCCCTGAAGCCCTCTCCTCCTATCTTCGC
TCCCTCCCTGCGCCCGGCGTGGCTTCGTGCTGGGCCGGAGGGAGGGGGGG
GGTAAGGGCAAGGGGGAGGAGGAGGAGGAGAGGGCATTCATGGCAGTTGC
AAGGGCAATGAGGACCACTGCGTCCTTTGGCCTGGTGGGGAAAGAGGCGC
TCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGGTAGGGAGAAAGGGGATGG
AGGGGAGGGAGAGATGGAGGGAGGGATCGGGGGAGGGATGGTTTACCTGC
TGCTGTAGGGCCATTTATCGATCTCTTCCCCTCCCTCGCCCTCCCTTCCT
CCCCTCCTTCCCTTCCTCCTTCCCTATCTCCTTTCCTCCCTCCTTAGCAA
CCCGCCTCTCAGCCCTTCGGGCTTCTTCCTTGCTAAGGTTGAGGGAGGGA
AGGAGAGAGGGGAGGAGCCACCCGTCTACTTCCCTGTCTCCTCCTCCTCT
TCCTCCACCTCCTCCCCACTCTCCCTCACGGACGCCAAGACGATCCAGCA
GTGGGTAAGGAGTAACAATCACCCCCCTCCTCTCTCCCTTGGGAGGACAC
AACTTCCGGCAGCTTGGCAGCTTGGGCAAGGTAGGGCGGGAGGGAGGGAG
GGAGGGAAAGAGGGAGGGAGGGAGGGAGGTTGCGAAGACGGCCATGAAAT
AAAAGAAGGGTTCAACTGTACATCTCACACCTAATGCTTCACCATTACCT
CCATTCCTCCCCAGTTGCTAGTCATCGCCGTTGTGGACCCTAACGGCTCT
CCAGCCGTTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTT
GCCGTACCTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGG
ATGGAGTGAGGTGGGCTGGCTTTGTCAAGGTAGGGAGGGAGGGAGGGGAG
GAGGGAGGGAAGGAGGGAGGGAGGAAAGGAGGGCATGGGCGTGAGTGCAG
CTGGTGGGCTGGCCGGATAGAGTGAGGTAGGCGGGCTTTGGCAAGACACG
TCCGTTCTTCCCTCGCTTGCTCCTTCTCACAATATCCCACTCATCCTTTC
TCCCACCCTCCCTTCCTCCCTCCCTCCCTCTTTAGAATTTCGGCATCGCC
AAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGATA
CTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTTG
TTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGTG
GTGGAGGGCAAGGTGACAAGGGGGGAAGGAAGGGAGGGAAGGAGGGAGGG
AGGGAGGGCGTGGGGGGGAGGGAGGGGGGGGGGGAGGGAGGGAAAACGGG
GGGAACCTTTCATCCCCTCCTCTGGGCGTGTATCACCCGCTCATTTATTT
ATTTAATAAGCCTTCACTACACCTCCTTCTTTGTCTTCTTCTCCTTACCT
TCTTCCCCCCCTTTCCTCTGCCCCACACAGGTCCCGGCAAAGAGGCAGGG
ATTTCTCGGCGGCATGCCAGCAGCACTCTGGAGCCGGTTGTCTGATATGT
GGCCTTGGTCTCTGGGTCTTCTATTGCCGTTAGGCTGGTTGATTGCCCTC
TGCTTAGGAGGTGGGTTGGGGAATGACGAGGAGGAGGAGGAACTGCGCCG
GGAACGAGTTGGGGGGTGAGGCGGGTGGAGGGTAAGGCAGAGCAGGAGGA
TGAGACGAAGAAGACAGGGAAAGTAGGGAGGGAGGAGGGTGTGTTGGATG
ATAAAGAGAAGGATGCAGGGGCGAAGAAAACGAGTAGGCGGACTCGTGAC
AGAGGGACTCTAAGAGGGAGGAGGAGAGGGTAATGGAAGGCGCCATGTTG
CCGAGAACACGAAATGCACGTCAAAAATATAATGAAAATAGCAATCACAG
ATCCCCGTTGGGTTAAGGTTGTGTTTTCTTGTTTTTATCATGCCGTCATC
TATTGAACTTTCGAAAGGAGGAAAAGAAAGGGGCTGTCGAAAGCATGTAT
TAACCCCTGCATTTTTAATGTCTTGGCAG back to topCoding sequence (CDS) from alignment at scaffold_2:563..2641- >mRNA_611 ID=mRNA_611|Name=jgi.p|Nanoce1779_2|573508|organism=Nannochloropsis oceanica|type=CDS|length=4245bp|location=Sequence derived from alignment at scaffold_2:563..2641- (Nannochloropsis oceanica)
GTCCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTG
GAGCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGT
TAGGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAG
GAGGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAAATTTCGGCAT
CGCCAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGA
GATACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAG
TTTGTTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGA
TGTGGTGGAGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGC
CGTTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGT
ACCTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGA
GTGAGGTGGGCTGGCTTTGTCAAGCAACCCGCCTCTCAGCCCTTCGGGCT
TCTTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCC
GTCTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTC
CCTCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACC
CCCCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTT
GGGCAAGATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCC
TGGTGGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGG
TCCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGG
AGCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTT
AGGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGG
AGGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAAATTTCGGCATC
GCCAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAG
ATACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAGT
TTGTTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGAT
GTGGTGGAGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCC
GTTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTA
CCTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAG
TGAGGTGGGCTGGCTTTGTCAAGCAACCCGCCTCTCAGCCCTTCGGGCTT
CTTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCG
TCTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCC
CTCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCC
CCCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTG
GGCAAGATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCCT
GGTGGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGGT
CCCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGGA
GCCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTTA
GGCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGGA
GGAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAAATTTCGGCATCG
CCAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGA
TACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTT
TGTTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATG
TGGTGGAGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCG
TTACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTAC
CTTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGT
GAGGTGGGCTGGCTTTGTCAAGCAACCCGCCTCTCAGCCCTTCGGGCTTC
TTCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCGT
CTACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCCC
TCACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCCC
CCTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTGG
GCAAGATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCCTG
GTGGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGGTC
CCGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGGAG
CCGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTTAG
GCTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGGAG
GAGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAAATTTCGGCATCGC
CAAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGAT
ACTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTT
GTTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGT
GGTGGAGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCGT
TACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTACC
TTCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGTG
AGGTGGGCTGGCTTTGTCAAGCAACCCGCCTCTCAGCCCTTCGGGCTTCT
TCCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCGTC
TACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCCCT
CACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCCCC
CTCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTGGG
CAAGATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCCTGG
TGGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAGGTCC
CGGCAAAGAGGCAGGGATTTCTCGGCGGCATGCCAGCAGCACTCTGGAGC
CGGTTGTCTGATATGTGGCCTTGGTCTCTGGGTCTTCTATTGCCGTTAGG
CTGGTTGATTGCCCTCTGCTTAGGAGGTGGGTTGGGGAATGACGAGGAGG
AGGAGGAACTGCGCCGGGAACGAGTTGGGGGGTGAAATTTCGGCATCGCC
AAGACGGAGCTCCCCTCCTTCTTTGTCCTCGATTTCCCCTCTGAGAGATA
CTGGGCCATGGGAGGGGATGGTGGGATGGGGTCTAAGGGAATGGAGTTTG
TTGAAGGGAGGGCGGCGATGGAGTCGATGGGAGCGTTTTTGGTGGATGTG
GTGGAGGGCAAGTCATCGCCGTTGTGGACCCTAACGGCTCTCCAGCCGTT
ACAGAAGCCTACCTCGAAATGCTGAAGGACATGGCGCGGTTGCCGTACCT
TCAGCCATACGTGCAAAGGGACCTGGTGATGGGCTGGTTGGATGGAGTGA
GGTGGGCTGGCTTTGTCAAGCAACCCGCCTCTCAGCCCTTCGGGCTTCTT
CCTTGCTAAGGTTGAGGGAGGGAAGGAGAGAGGGGAGGAGCCACCCGTCT
ACTTCCCTGTCTCCTCCTCCTCTTCCTCCACCTCCTCCCCACTCTCCCTC
ACGGACGCCAAGACGATCCAGCAGTGGGTAAGGAGTAACAATCACCCCCC
TCCTCTCTCCCTTGGGAGGACACAACTTCCGGCAGCTTGGCAGCTTGGGC
AAGATGGCAGTTGCAAGGGCAATGAGGACCACTGCGTCCTTTGGCCTGGT
GGGGAAAGAGGCGCTCGAGAAGGGGAAAGGGAAGCAGCTCTTCAG back to top
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