jgi.p|Nanoce1779_2|593776, mRNA_6108 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593776
Unique NamemRNA_6108
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1441
Alignment locationscaffold_14:530686..532473 -

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Properties
Property NameValue
TranscriptId593862
TrackFilteredModels2
ProteinId593776
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:530686..532473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593776gene_6108Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593776mRNA_6108-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6108CDS_6108Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6108 ID=mRNA_6108|Name=jgi.p|Nanoce1779_2|593776|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
TGGTAATCGAGGCACCGAGGGACCGAGGGAAGTCACTGCTTATAGTTCGA
GGCAATGTACACAGGTAACCCTCGTGATAGCTTCGAAGGCATCGTGTGCA
TGGAAGGAGATTGACAATATGATTTCAGCACGAGTGTCGGTGAAGATGGC
CCGGCGAAGCCTCTCCCATAACCGACACTGCAAGTGGGCACGCTCTGTTG
CCCTGGTCACCCGCTGATTACGACCGCCAAGGCCGAATTAGAGCAGGGCT
GCGTGCAACAGGGTAGGAAGAAGCCTTTGAAGTTCTGCGGCAGCTTGTTT
GCCAGGCTTCCGTGTGGTTCGAAAACACCCATGTAGAGAAACCCTACCGT
ACTACGATTCGTAATCCGGTAAGATGTCTTCACGTTGGGGTGTCAAGAAA
GGCGCGAGAATTACCGGCCACCCCAGCCATACTGTGTGAAGAGCAGAGAC
TACAAAGCCAAGCACGATGCGTAAAATTCATTCCCTCGCCATCCCCACCA
TCAACCATTGTAGGACGAAAACGTAAGATCGCCAGTTCCAAGGCTTCTGC
AGGGTAGAAAGGCAAAAGTATCTCTGCCTTGCTTCTTCATCATCATCATG
ATCATCATCATAATCATCACCACCACCGCCGGGTGGAGCAGTACACCAAG
CTCCACGCCGCCCTTGCCCCAAGTTCTTTACCGTGGCACCATGAACAGCA
GCATTGAGGCGCATTTGCAGCCGCTATGAAAACCACCCCACCTTTTCTTA
CGCCGCACCATCCATCCTCACTATCTTTCAACTCAGAACAAAACCATGAG
CAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGGAAAAT
TCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGCTACGG
TACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAGCAAGT
GTATGTCTCCCAAACGGTGCTGGACGAATTTCGGCGCATCGTGGAGGAGT
CCCAGGTAGTGGCAGAAGACGACAAAGACTGGCCGGAGCCTGATAGGGTT
GGGAAACAAGAGCTGGAAGTCCGTATGGGCGATGATCACATTCGGTTTAC
CTGCTCGAAGATTGGGTCGCTGCTGGATGTGCAAGACAGCAAGGATCCGG
AGGGTTTGAGGATATTTTATTACTTGGTTCAGGACTTGCGGTGTTTGTTG
TTTTCATTGATTGGATTGCATTTCAAGATCAAACCCATTCCCACCTAAGC
CTTCACACATAGCACAAGTGCGCAGCTATCGCACAGCAGCAGAAGGAAGA
TAAGACGACGAAGATGCTCGGCGTGAGCTTACGTATGTAAGTATGGATAA
AATACTTTTCGAAGAAGACAATTAAACGCTTAAGAAAGAAGAAAAAAAAA
AGAAAGAAAAAAGAGCAAAGCAGCAAGAGAATACAAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|593776

>mRNA_6108-protein ID=mRNA_6108-protein|Name=jgi.p|Nanoce1779_2|593776|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSSGDDFYLRYYVGHTGKFGHEFMEFEIQPSGQLRYANNSNYKNAKMIRK
QVYVSQTVLDEFRRIVEESQVVAEDDKDWPEPDRVGKQELEVRMGDDHIR
FTCSKIGSLLDVQDSKDPEGLRIFYYLVQDLRCLLFSLIGLHFKIKPIPT
*
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mRNA from alignment at scaffold_14:530686..532473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6108 ID=mRNA_6108|Name=jgi.p|Nanoce1779_2|593776|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at scaffold_14:530686..532473- (Nannochloropsis oceanica)
TGGTAATCGAGGCACCGAGGGACCGAGGGAAGTCACTGCTTATAGTTCGA
GGCAATGTACACAGGTAACCCTCGTGATAGCTTCGAAGGCATCGTGTGCA
TGGAAGGAGATTGACAATATGATTTCAGCACGAGTGTCGGTGAAGATGGC
CCGGCGAAGCCTCTCCCATAACCGACACTGCAAGTGGGCACGCTCTGTTG
CCCTGGTCACCCGCTGATTACGACCGCCAAGGCCGAATTAGAGCAGGGCT
GCGTGCAACAGGGTAGGAAGAAGCCTTTGAAGTTCTGCGGCAGCTTGTTT
GCCAGGCTTCCGTGTGGTTCGAAAACACCCATGTAGAGAAACCCTACCGT
ACTACGATTCGTAATCCGGTAAGATGTCTTCACGTTGGGGTGTCAAGAAA
GGCGCGAGAATTACCGGCCACCCCAGCCATACTGTGTGAAGAGCAGAGAC
TACAAAGCCAAGCACGATGCGTAAAATTCATTCCCTCGCCATCCCCACCA
TCAACCATTGTAGGACGAAAACGTAAGATCGCCAGTTCCAAGGCTTCTGC
AGGGTAGAAAGGCAAAAGTATCTCTGCCTTGCTTCTTCATCATCATCATG
ATCATCATCATAATCATCACCACCACCGCCGGGTGGAGCAGTACACCAAG
CTCCACGCCGCCCTTGCCCCAAGTTCTTTACCGTGGCACCATGAACAGCA
GCATTGAGGCGCATTTGCAGCCGCTATGAAAACCACCCCACCTTTTCTTA
CGCCGCACCATCCATCCTCACTATCTTTCAACTCAGAACAAAACCATGAG
CAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGGAAAAT
TCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGCTACGG
TACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAGCAAGG
TACGTTCGTTAGGAAGGGAGGAAGGAGGTGGGACAGGAAGGGAAACAAGG
AAAGCCTCATAACGCGTGATGCGCGTCGTTTTAAACTTCAACTTATGCGT
CCATTTGCTTCACTAAAGTGTATGTCTCCCAAACGGTGCTGGACGAATTT
CGGCGCATCGTGGAGGAGTCCCAGGTAGTGGCAGAAGACGACAAAGACTG
GCCGGAGCCTGATAGGGTTGGGAAACAAGAGCTGGAAGTCCGTATGGGCG
ATGATCACATTCGGTTTACCTGCTCGAAGATTGGGTCGCTGCTGGATGTG
CAAGACAGCAAGGATCCGGAGGGTTTGAGGATATTTTATTACTTGGTTCA
GGACTTGCGGTGTTTGTTGTTTTCATTGATTGGATTGCATTTCAAGGTAA
GATCTGCAAGGAAAGTGGGGGAATGGAGGGAATGGGAGGTGGCACTGTCG
TCCAGATACATGCGGAAAGGGTGGAGTGGAGGGAACGTAGGGAATTATAG
GTGAAGATCAATTTACGCAGACACTGCGGGAATGACTACAGATCATTGAC
GCGGGTGCGGACAAAGCGGGTGGCTCACATTTTCATCTTCATTTTTCCTT
TTCCCAACTCACGCGACCACACAGATCAAACCCATTCCCACCTAAGCCTT
CACACATAGCACAAGTGCGCAGCTATCGCACAGCAGCAGAAGGAAGATAA
GACGACGAAGATGCTCGGCGTGAGCTTACGTATGTAAGTATGGATAAAAT
ACTTTTCGAAGAAGACAATTAAACGCTTAAGAAAGAAGAAAAAAAAAAGA
AAGAAAAAAGAGCAAAGCAGCAAGAGAATACAAAGAGG
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Coding sequence (CDS) from alignment at scaffold_14:530686..532473-

>mRNA_6108 ID=mRNA_6108|Name=jgi.p|Nanoce1779_2|593776|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_14:530686..532473- (Nannochloropsis oceanica)
ATCAAACCCATTCCCACCTAATGTATGTCTCCCAAACGGTGCTGGACGAA
TTTCGGCGCATCGTGGAGGAGTCCCAGGTAGTGGCAGAAGACGACAAAGA
CTGGCCGGAGCCTGATAGGGTTGGGAAACAAGAGCTGGAAGTCCGTATGG
GCGATGATCACATTCGGTTTACCTGCTCGAAGATTGGGTCGCTGCTGGAT
GTGCAAGACAGCAAGGATCCGGAGGGTTTGAGGATATTTTATTACTTGGT
TCAGGACTTGCGGTGTTTGTTGTTTTCATTGATTGGATTGCATTTCAAGA
TGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACAGGA
AAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCAGCT
ACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCAAGC
AAGATCAAACCCATTCCCACCTAATGTATGTCTCCCAAACGGTGCTGGAC
GAATTTCGGCGCATCGTGGAGGAGTCCCAGGTAGTGGCAGAAGACGACAA
AGACTGGCCGGAGCCTGATAGGGTTGGGAAACAAGAGCTGGAAGTCCGTA
TGGGCGATGATCACATTCGGTTTACCTGCTCGAAGATTGGGTCGCTGCTG
GATGTGCAAGACAGCAAGGATCCGGAGGGTTTGAGGATATTTTATTACTT
GGTTCAGGACTTGCGGTGTTTGTTGTTTTCATTGATTGGATTGCATTTCA
AGATGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCACACA
GGAAAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGGCCA
GCTACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCCGCA
AGCAAGATCAAACCCATTCCCACCTAATGTATGTCTCCCAAACGGTGCTG
GACGAATTTCGGCGCATCGTGGAGGAGTCCCAGGTAGTGGCAGAAGACGA
CAAAGACTGGCCGGAGCCTGATAGGGTTGGGAAACAAGAGCTGGAAGTCC
GTATGGGCGATGATCACATTCGGTTTACCTGCTCGAAGATTGGGTCGCTG
CTGGATGTGCAAGACAGCAAGGATCCGGAGGGTTTGAGGATATTTTATTA
CTTGGTTCAGGACTTGCGGTGTTTGTTGTTTTCATTGATTGGATTGCATT
TCAAGATGAGCAGCGGCGACGACTTCTATCTCCGCTACTATGTGGGGCAC
ACAGGAAAATTCGGTCACGAATTCATGGAATTTGAGATCCAGCCCTCCGG
CCAGCTACGGTACGCCAACAATAGCAACTACAAGAACGCCAAGATGATCC
GCAAGCAAG
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Synonyms
Publications