jgi.p|Nanoce1779_2|593772, mRNA_6107 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593772
Unique NamemRNA_6107
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_14:529117..530662 +

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Properties
Property NameValue
TranscriptId593858
TrackFilteredModels2
ProteinId593772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:529117..530662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593772gene_6107Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593772mRNA_6107-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6107CDS_6107Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Nanoce1779_2|593772|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ACAGCCATGCGTGTCTTAGCCGCGCTCGTGGCGCTACCAGCGCTGTGTTC
TGCCTTCGTAATGCCCTCTATGTCTACATCCAAGTCTGCCGTCCGCATGA
TGGCAGAGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGCGGGCAGGCCGCC
TCGGCCGTGTCTAAGGACTTCAAGACCCTCCTTACCAATGAGAACATCGC
CGCCATCCTGCCCCATCGATATCCCTTCTTGCTCGTCGACAAGGTCATTG
AGTTCGAGCCCGGGAAGAAGGCCGTGGGCATCAAGCAGATTACGGCTAAC
GAGCCTCAGTTCACTGGTCACTTTCCCGATCGGCCCATCATGCCTGGTGT
CTTGATGGTGGAGGCAATGGCCCAGCTGTCGGGCGTGCTGTGCCTGCAAG
CCCCGGTCTCGGACGGGAAGGGCCTTTTCTTTTTTGCTGGCATTGACGGC
GTGAAGTTCCGCAAGCCTGTGGTGCCCGGCGACACGCTGGTGATGGAGGT
GGAGCTTGTCAAGTTCATGGCTTCTTTTGGTATCGCCAAGCTCAAGGGCA
AGGCTTACGTTGATGGCGATGTGGCTGTCGAGGTCAAGGAGATGACTTTC
GCTCTGTCGAAGTAATTAGCCTCGCCGGTAGGAGGAAGGAGAAGGAGAAG
GCATGGGCAGCAGCAGCAGCTGCTGCTGCAGCATAAAACGCTGGCAGGCA
GCTCTTTGGGATAAACGTGGTGTATGTTTTTGTTGTGATTATTTGTGCGG
GTGAGAGAGCGTTCGTGCTTGTGTCTTGCAGTGTTATGGTTTGATTGTTT
CATGCACGTACGTGTGCATTTGTGGGTTTGTGAGTTTGTGGGTGTGCATG
TGTGCGTACGTGGCCAATCGTACGACCGCTTAATAACCTCCACCCTCTCC
GTGGGCCATGAGGAACACGTCTTCAGGACTCCCTCCTCCTGTAAAAGGAA
TCGAAACAAAATCCAAGACCAAACAAACTGAGGAAAAGAAAAGAAAGGCG
CGCATGAGCGCTCTCTCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|593772

>mRNA_6107-protein ID=mRNA_6107-protein|Name=jgi.p|Nanoce1779_2|593772|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MRVLAALVALPALCSAFVMPSMSTSKSAVRMMAEGEAAGSEWRGGQAASA
VSKDFKTLLTNENIAAILPHRYPFLLVDKVIEFEPGKKAVGIKQITANEP
QFTGHFPDRPIMPGVLMVEAMAQLSGVLCLQAPVSDGKGLFFFAGIDGVK
FRKPVVPGDTLVMEVELVKFMASFGIAKLKGKAYVDGDVAVEVKEMTFAL
SK*
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mRNA from alignment at scaffold_14:529117..530662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Nanoce1779_2|593772|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at scaffold_14:529117..530662+ (Nannochloropsis oceanica)
ACAGCCATGCGTGTCTTAGCCGCGCTCGTGGCGCTACCAGCGCTGTGTTC
TGCCTTCGTAATGCCCTCTATGTCTACATCCAAGGTAAGCTATGAACTGT
GCACTGCTAGGGTATAAGGTTTGATAGACCCACCCCCGGTAGAGGCACGT
ACGACTCACCTTTTCGTCTCTTTCCCCCCACGCCTCTTTGGAGTCTGCCG
TCCGCATGATGGCAGAGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGCGGG
CAGGCCGCCTCGGCCGTGTCTAAGGACTTCAAGACCCTCCTTACCAATGA
GAACATCGCCGCCATCCTGCCCCATCGATATCCCTTCTTGCTCGTCGACA
AGGTCATTGAGTTCGAGCCCGGGAAGAAGGCCGTGGGCATCAAGCAGATT
ACGGCTAACGAGCCTCAGTTCACTGGTCACTTTCCCGATCGGCCCATCAT
GCCTGGTGTCTTGATGGTGGAGGCAATGGCCCAGCTGTCGGGCGTGCTGT
GCCTGCAAGCCCCGGTCTCGGACGGGAAGGGCCTTTTCTTTTTTGCTGGT
ACGTACCACAGGAAGCGTGCGGCTTGCTGCGAAAAGAACGACGAGAAGAT
AAACGATGGAGAGGAACTTCGGTCGTGTGATCGGATGACTTCGATACCGG
GCGGGCCTATTTGTCTCCCCTCCTCTTTCTCGCTCCTGCAGCCTGGAACC
CAAGGCCGGGGAGTTACATTTTGGATTGGATATATACGCTAGCATCATCA
CTATTCAGGTAGTCATTTCTTCCTTCGCGAACTACAAAACAAAACAGGCA
TTGACGGCGTGAAGTTCCGCAAGCCTGTGGTGCCCGGCGACACGCTGGTG
ATGGAGGTGGAGCTTGTCAAGTTCATGGCTTCTTTTGGTATCGCCAAGCT
CAAGGGCAAGGCTTACGTTGATGGCGATGTGGCTGTCGAGGTCAAGGTAC
GTTGTCATGGGAAGGAGGTAGGGTGAAAGGGGGAAATGACTTTGTCGGCG
TACATTCCTTAAATGTGGTCCTGATTTCAATGTTTTGTGTATATGTGTGT
CCTTTTCCTGTGCTGATTTTTACATTCGACACTCTCACGCCTTCTCCACT
ACACGTCGTAGGAGATGACTTTCGCTCTGTCGAAGTAATTAGCCTCGCCG
GTAGGAGGAAGGAGAAGGAGAAGGCATGGGCAGCAGCAGCAGCTGCTGCT
GCAGCATAAAACGCTGGCAGGCAGCTCTTTGGGATAAACGTGGTGTATGT
TTTTGTTGTGATTATTTGTGCGGGTGAGAGAGCGTTCGTGCTTGTGTCTT
GCAGTGTTATGGTTTGATTGTTTCATGCACGTACGTGTGCATTTGTGGGT
TTGTGAGTTTGTGGGTGTGCATGTGTGCGTACGTGGCCAATCGTACGACC
GCTTAATAACCTCCACCCTCTCCGTGGGCCATGAGGAACACGTCTTCAGG
ACTCCCTCCTCCTGTAAAAGGAATCGAAACAAAATCCAAGACCAAACAAA
CTGAGGAAAAGAAAAGAAAGGCGCGCATGAGCGCTCTCTCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_14:529117..530662+

>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Nanoce1779_2|593772|organism=Nannochloropsis oceanica|type=CDS|length=2436bp|location=Sequence derived from alignment at scaffold_14:529117..530662+ (Nannochloropsis oceanica)
ATGCGTGTCTTAGCCGCGCTCGTGGCGCTACCAGCGCTGTGTTCTGCCTT
CGTAATGCCCTCTATGTCTACATCCAAGTCTGCCGTCCGCATGATGGCAG
AGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGCGGGCAGGCCGCCTCGGCC
GTGTCTAAGGACTTCAAGACCCTCCTTACCAATGAGAACATCGCCGCCAT
CCTGCCCCATCGATATCCCTTCTTGCTCGTCGACAAGGTCATTGAGTTCG
AGCCCGGGAAGAAGGCCGTGGGCATCAAGCAGATTACGGCTAACGAGCCT
CAGTTCACTGGTCACTTTCCCGATCGGCCCATCATGCCTGGTGTCTTGAT
GGTGGAGGCAATGGCCCAGCTGTCGGGCGTGCTGTGCCTGCAAGCCCCGG
TCTCGGACGGGAAGGGCCTTTTCTTTTTTGCTGGCATTGACGGCGTGAAG
TTCCGCAAGCCTGTGGTGCCCGGCGACACGCTGGTGATGGAGGTGGAGCT
TGTCAAGTTCATGGCTTCTTTTGGTATCGCCAAGCTCAAGGGCAAGGCTT
ACGTTGATGGCGATGTGGCTGTCGAGGTCAAGGAGATGACTTTCGCTCTG
TCGAAGTAAATGCGTGTCTTAGCCGCGCTCGTGGCGCTACCAGCGCTGTG
TTCTGCCTTCGTAATGCCCTCTATGTCTACATCCAAGTCTGCCGTCCGCA
TGATGGCAGAGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGCGGGCAGGCC
GCCTCGGCCGTGTCTAAGGACTTCAAGACCCTCCTTACCAATGAGAACAT
CGCCGCCATCCTGCCCCATCGATATCCCTTCTTGCTCGTCGACAAGGTCA
TTGAGTTCGAGCCCGGGAAGAAGGCCGTGGGCATCAAGCAGATTACGGCT
AACGAGCCTCAGTTCACTGGTCACTTTCCCGATCGGCCCATCATGCCTGG
TGTCTTGATGGTGGAGGCAATGGCCCAGCTGTCGGGCGTGCTGTGCCTGC
AAGCCCCGGTCTCGGACGGGAAGGGCCTTTTCTTTTTTGCTGGCATTGAC
GGCGTGAAGTTCCGCAAGCCTGTGGTGCCCGGCGACACGCTGGTGATGGA
GGTGGAGCTTGTCAAGTTCATGGCTTCTTTTGGTATCGCCAAGCTCAAGG
GCAAGGCTTACGTTGATGGCGATGTGGCTGTCGAGGTCAAGGAGATGACT
TTCGCTCTGTCGAAGTAAATGCGTGTCTTAGCCGCGCTCGTGGCGCTACC
AGCGCTGTGTTCTGCCTTCGTAATGCCCTCTATGTCTACATCCAAGTCTG
CCGTCCGCATGATGGCAGAGGGTGAAGCGGCAGGTTCTGAGTGGCGTGGC
GGGCAGGCCGCCTCGGCCGTGTCTAAGGACTTCAAGACCCTCCTTACCAA
TGAGAACATCGCCGCCATCCTGCCCCATCGATATCCCTTCTTGCTCGTCG
ACAAGGTCATTGAGTTCGAGCCCGGGAAGAAGGCCGTGGGCATCAAGCAG
ATTACGGCTAACGAGCCTCAGTTCACTGGTCACTTTCCCGATCGGCCCAT
CATGCCTGGTGTCTTGATGGTGGAGGCAATGGCCCAGCTGTCGGGCGTGC
TGTGCCTGCAAGCCCCGGTCTCGGACGGGAAGGGCCTTTTCTTTTTTGCT
GGCATTGACGGCGTGAAGTTCCGCAAGCCTGTGGTGCCCGGCGACACGCT
GGTGATGGAGGTGGAGCTTGTCAAGTTCATGGCTTCTTTTGGTATCGCCA
AGCTCAAGGGCAAGGCTTACGTTGATGGCGATGTGGCTGTCGAGGTCAAG
GAGATGACTTTCGCTCTGTCGAAGTAAATGCGTGTCTTAGCCGCGCTCGT
GGCGCTACCAGCGCTGTGTTCTGCCTTCGTAATGCCCTCTATGTCTACAT
CCAAGTCTGCCGTCCGCATGATGGCAGAGGGTGAAGCGGCAGGTTCTGAG
TGGCGTGGCGGGCAGGCCGCCTCGGCCGTGTCTAAGGACTTCAAGACCCT
CCTTACCAATGAGAACATCGCCGCCATCCTGCCCCATCGATATCCCTTCT
TGCTCGTCGACAAGGTCATTGAGTTCGAGCCCGGGAAGAAGGCCGTGGGC
ATCAAGCAGATTACGGCTAACGAGCCTCAGTTCACTGGTCACTTTCCCGA
TCGGCCCATCATGCCTGGTGTCTTGATGGTGGAGGCAATGGCCCAGCTGT
CGGGCGTGCTGTGCCTGCAAGCCCCGGTCTCGGACGGGAAGGGCCTTTTC
TTTTTTGCTGGCATTGACGGCGTGAAGTTCCGCAAGCCTGTGGTGCCCGG
CGACACGCTGGTGATGGAGGTGGAGCTTGTCAAGTTCATGGCTTCTTTTG
GTATCGCCAAGCTCAAGGGCAAGGCTTACGTTGATGGCGATGTGGCTGTC
GAGGTCAAGGAGATGACTTTCGCTCTGTCGAAGTAA
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Synonyms
Publications