jgi.p|Nanoce1779_2|593765, mRNA_6106 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593765
Unique Name	mRNA_6106
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1544
Alignment location	scaffold_14:526856..528399 -

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Properties


Property Name	Value
TranscriptId	593851
Track	FilteredModels2
ProteinId	593765

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:526856..528399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593765	gene_6106	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593765	mRNA_6106-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6106	CDS_6106	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:526856..528399-
coding sequence from alignment at scaffold_14:526856..528399-

mRNA sequence

>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Nanoce1779_2|593765|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
AGCAACGTTCCACATTCCACATTAGACATTGAATGGTATGTAAGGGAAGG
ACGAGGAAGAGAGCGTTCTTGAGGAGGCGGGGGAGCGGCATGAGCACCAT
TGTGAGAGCCAAGGCCAGCAGGCACAAGTGCAGGATAAGCAGCCTCCATC
TTCATTCATTTTCTCCGTCCGCGACTCTGCGTGCTCGGAGACCAAGCAAG
GCTTAGCTGTCAGGCCCAAGCCCGCGTTTACAGAGAACCTTATGGATGAG
CCCGTGACGAAGAGGGTAAATGCCGAAAGGCGATTTATGTTACAAGATCA
AACTCCTTGCTCCGCAAGTATTACATGCCCACGTCGTCCACTACCCCCGA
TGGCGGGGATATGAGGGCCTTTTTGCGAATAGTCGGCGCTGTTCTAGTTC
CGAACCAAACGGGCTCTGTCGTTCTGGACGCCGCGCACACCAATGGCAGA
AGCCTCTGGACGTTCCTCTTTTCGTTGCTCGGACGCTCTGCGATGGGCCA
AAATATTTTATCTGAAAGTAGTGTCTGGAAACTCATGCATCAATACCAAC
GGCGGCTCTATCGCACGGACCTCGATAAACGAAAAGAAATTATAGGTGAC
ATAGACTGGAAGAAGCCCAAGCATGACCGTCTTTTCTCCCTCATCCTTCC
CCGAAGTGAGTCCCCTACCACGAGGAAGAAGAATCCGACCCCGATAAAAG
TGGTTACAGTGCGAGGGTATTTCTATATGGGCGTGAGCCTCCGCGACCCA
CACACGAATCGGGCACTGCCAGGGGACCTGGAGAATGTTCTGCATCGTTT
GGCAACAGGGATAAGCTCCGTGGTTGTAGAGGAGGCCATGCGGCAGTACA
AGCATTTATGGGCGAGCCATGAGCCGTTGCCTTTGACGCGTGTTCGGTGG
CGACGAATCGTGATGGAGTGAAAAGGGGAAGGGAGGAAGAGAGAGTGACT
TGACTTGAAGGGGAATGCTGACTGAGAGTAGAGCGTGAAGACGCAGCAAA
GCGGTAAGACGAGCGCACAGAACACCAAAAGGTAAAGACTGAAATCAAAT
CTTGATGCGAGATAGCTAGAATGGAAATGTTCTGCTCTTGTAGTTTGGGA
GATTGAGGCAGGTGTCGATGGTAGAGCAAAAGGACTATATCTGAGATGAA
GAGAGATAAGACGAGGACATGTATAAACAGTGAACATAGAAACACAAGAT
TGGATTACATGATAAGACTCAGGAGTGAATGCCTGTTGATTGCCAAATGA
GAGAAAGAAAATGCGACATGAGGCGATGAATGCGAAAAAAGCAAGCAATC
AAGCAAAATCACAAATACACATGTGCATGGTCTGATTGAAACTATAGCAA
CACCAGCAGGAGCTATCCTTCTCATGAAGCGAGTAACCCCCCCATTAATT
CGTCGCGATGAGAGGCATCCGACAAGGGACAGTGCAATATGAAGTGGGAA
AAGGGAAAAGAAACCGAGATAACGGAATCAGGAGATGAATGCACATATAA
GGGGAGATGGGGCACACAAAAAGAGCGTACGTTTAAGTGTGAAA

protein sequence of jgi.p|Nanoce1779_2|593765

>mRNA_6106-protein ID=mRNA_6106-protein|Name=jgi.p|Nanoce1779_2|593765|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPTSSTTPDGGDMRAFLRIVGAVLVPNQTGSVVLDAAHTNGRSLWTFLFS
LLGRSAMGQNILSESSVWKLMHQYQRRLYRTDLDKRKEIIGDIDWKKPKH
DRLFSLILPRSESPTTRKKNPTPIKVVTVRGYFYMGVSLRDPHTNRALPG
DLENVLHRLATGISSVVVEEAMRQYKHLWASHEPLPLTRVRWRRIVME*

mRNA from alignment at scaffold_14:526856..528399-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Nanoce1779_2|593765|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp|location=Sequence derived from alignment at scaffold_14:526856..528399- (Nannochloropsis oceanica)
AGCAACGTTCCACATTCCACATTAGACATTGAATGGTATGTAAGGGAAGG
ACGAGGAAGAGAGCGTTCTTGAGGAGGCGGGGGAGCGGCATGAGCACCAT
TGTGAGAGCCAAGGCCAGCAGGCACAAGTGCAGGATAAGCAGCCTCCATC
TTCATTCATTTTCTCCGTCCGCGACTCTGCGTGCTCGGAGACCAAGCAAG
GCTTAGCTGTCAGGCCCAAGCCCGCGTTTACAGAGAACCTTATGGATGAG
CCCGTGACGAAGAGGGTAAATGCCGAAAGGCGATTTATGTTACAAGATCA
AACTCCTTGCTCCGCAAGTATTACATGCCCACGTCGTCCACTACCCCCGA
TGGCGGGGATATGAGGGCCTTTTTGCGAATAGTCGGCGCTGTTCTAGTTC
CGAACCAAACGGGCTCTGTCGTTCTGGACGCCGCGCACACCAATGGCAGA
AGCCTCTGGACGTTCCTCTTTTCGTTGCTCGGACGCTCTGCGATGGGCCA
AAATATTTTATCTGAAAGTAGTGTCTGGAAACTCATGCATCAATACCAAC
GGCGGCTCTATCGCACGGACCTCGATAAACGAAAAGAAATTATAGGTGAC
ATAGACTGGAAGAAGCCCAAGCATGACCGTCTTTTCTCCCTCATCCTTCC
CCGAAGTGAGTCCCCTACCACGAGGAAGAAGAATCCGACCCCGATAAAAG
TGGTTACAGTGCGAGGGTATTTCTATATGGGCGTGAGCCTCCGCGACCCA
CACACGAATCGGGCACTGCCAGGGGACCTGGAGAATGTTCTGCATCGTTT
GGCAACAGGGATAAGCTCCGTGGTTGTAGAGGAGGCCATGCGGCAGTACA
AGCATTTATGGGCGAGCCATGAGCCGTTGCCTTTGACGCGTGTTCGGTGG
CGACGAATCGTGATGGAGTGAAAAGGGGAAGGGAGGAAGAGAGAGTGACT
TGACTTGAAGGGGAATGCTGACTGAGAGTAGAGCGTGAAGACGCAGCAAA
GCGGTAAGACGAGCGCACAGAACACCAAAAGGTAAAGACTGAAATCAAAT
CTTGATGCGAGATAGCTAGAATGGAAATGTTCTGCTCTTGTAGTTTGGGA
GATTGAGGCAGGTGTCGATGGTAGAGCAAAAGGACTATATCTGAGATGAA
GAGAGATAAGACGAGGACATGTATAAACAGTGAACATAGAAACACAAGAT
TGGATTACATGATAAGACTCAGGAGTGAATGCCTGTTGATTGCCAAATGA
GAGAAAGAAAATGCGACATGAGGCGATGAATGCGAAAAAAGCAAGCAATC
AAGCAAAATCACAAATACACATGTGCATGGTCTGATTGAAACTATAGCAA
CACCAGCAGGAGCTATCCTTCTCATGAAGCGAGTAACCCCCCCATTAATT
CGTCGCGATGAGAGGCATCCGACAAGGGACAGTGCAATATGAAGTGGGAA
AAGGGAAAAGAAACCGAGATAACGGAATCAGGAGATGAATGCACATATAA
GGGGAGATGGGGCACACAAAAAGAGCGTACGTTTAAGTGTGAAA

Coding sequence (CDS) from alignment at scaffold_14:526856..528399-

>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Nanoce1779_2|593765|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_14:526856..528399- (Nannochloropsis oceanica)
ATGCCCACGTCGTCCACTACCCCCGATGGCGGGGATATGAGGGCCTTTTT
GCGAATAGTCGGCGCTGTTCTAGTTCCGAACCAAACGGGCTCTGTCGTTC
TGGACGCCGCGCACACCAATGGCAGAAGCCTCTGGACGTTCCTCTTTTCG
TTGCTCGGACGCTCTGCGATGGGCCAAAATATTTTATCTGAAAGTAGTGT
CTGGAAACTCATGCATCAATACCAACGGCGGCTCTATCGCACGGACCTCG
ATAAACGAAAAGAAATTATAGGTGACATAGACTGGAAGAAGCCCAAGCAT
GACCGTCTTTTCTCCCTCATCCTTCCCCGAAGTGAGTCCCCTACCACGAG
GAAGAAGAATCCGACCCCGATAAAAGTGGTTACAGTGCGAGGGTATTTCT
ATATGGGCGTGAGCCTCCGCGACCCACACACGAATCGGGCACTGCCAGGG
GACCTGGAGAATGTTCTGCATCGTTTGGCAACAGGGATAAGCTCCGTGGT
TGTAGAGGAGGCCATGCGGCAGTACAAGCATTTATGGGCGAGCCATGAGC
CGTTGCCTTTGACGCGTGTTCGGTGGCGACGAATCGTGATGGAGTGA

Synonyms

Publications