jgi.p|Nanoce1779_2|593763, mRNA_6105 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593763
Unique Name	mRNA_6105
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1726
Alignment location	scaffold_14:524972..526823 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593849
Track	FilteredModels2
ProteinId	593763

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:524972..526823 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593763	gene_6105	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593763	mRNA_6105-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6105	CDS_6105	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:524972..526823+
coding sequence from alignment at scaffold_14:524972..526823+

mRNA sequence

>mRNA_6105 ID=mRNA_6105|Name=jgi.p|Nanoce1779_2|593763|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp
ACAGGATTCCTACGACGATGATCACCGCCATGCCGGCGAGGCAAAAGCCA
AGAAGCTGCCGACCGGCTTCGTTCCCTGCCTCCGCCCTTCTCGCCTTCCT
CCTCCTCCCCTCCTCCCATGCCTACCTAATGCCACGTGTGTCCAAGTCCG
CCGACTTTTCCAATCCGCCACAGCACCGCTACGACCGAGCGAAACAGCGG
CCACTCACCGGCGCCTCCTTCCCCTCCTCTTCTGTCTCCGTCTCTCCCCT
CGCGGTCGCCGCCACCAGCACCACCGCTAGCACGACAAACATCAAACGGG
AGCTCGTAGGCGCCTCAAAGTTCGTCCGACAAAACCCGCAATCCGACCGG
TTCAAGGTCCTCAACTTCCACCACGTCGAGTTCTACTGCGGTGACGCCAC
AAATACCTACCGTCGTTTCCAGCTGGGGCTAGGCATGAATCTGGTTGCGA
AATCAGACCTCTCCACTGGCAACAGTCGGTTTGCAAGCTACTGCCTCCGC
TCAAACAACTTGCAGATGGTCTTCACGGCTCCGTACTCCATGAGCGTCAC
CACCACCAAAGCGCCAACACCGGTAGCAGCAGTAGCAGTAGCAAATGGGG
ATGAATTGGAACGTGATCCTAATCCCGGCTTCGACTCTAAGCATGCCACC
GACTTTTTCACTCAACACGGAGTAGCGGTCCGTGCGATTGGATTAGAAGT
CGAGGACGCGACAAAGGCCTACACTGAATGCATTGCCCATGGAGGCCAAG
CGGTATTGGAACCTGTAAGGCTCGTGCCTGCTCCTATGTCGGGACAGAGG
GGCTATGCTGTTATGTCTGAAGTAAGGGCCTACGGAGACGTGGTCCTCCG
GTTTGTCTCAAAGCATGAGGGCTACGCCGGGTCCTTCCTCCCTGCTTACA
CAGAGGAGGACATATCCCCTCCCAGCAGCAGCAGCAGTAGGAAGATACTC
GATTATGGCTTGGAGCGAGTCGATCACGCCGTCGGAAACGTCTGGGAGCT
CCTCGACGCTGTTGGGTACATCGGGGAAATGACCGGCTTCCACCCATTTG
CTGAGTTCGTGGCCGAGGATGTGGGCACGATAGACAGCGGTCTCAATTCT
ATCGTCCTGGCCAACAACGCGGAAGATGTCTTGCTGCCCCTCAATGAACC
TACCTACGGTACGAAGCGGCAAAGCCAAATCCAAACCTACCTGGAGTGCA
ACAAGGGGCCTGGCGTCCAACACCTCGCTTTGGCAACCAAAAACATCTTT
TCGACCATGAGAAAAATGCGGGCCGTCTCTGAGATGGGTGGATTCTCATT
CATGGCTCCCCCTCCTCCGTCGTACTATCGCGCGCTGCCGAAACGGTTGG
AGGGAGCACTGACGCACCAGCAGCTCGAGGAGGTGGAGGAGCTGGGCTTG
CTGGCGGATAAAGACGACCAGGGGGTACTCCTTCAGATCTTTACCCTCCC
CGTCGGTGACCGGCCCACGCTCTTCCTGGAAATCATTCAACGCGTCGGGT
GCGAAACTCCTGATCCTTCAAATCTGGGCGAGACGATACAGAAAGGAGGC
TGCGGTGGCTTTGGCAAGGGGAACTTTGCCGCGCTTTTCAAGTCCATTGA
GGAGTATGAGAAGAAATTAAATGTCTAGGAAAGGCAGGAAGAGAGGGAGG
GAATGAAGGAGGGAACTGTCGTCGGCGTATGATGTACAAAGGGTGGGTAG
GTGATGACAAACGAATAGAGCAAGAC

protein sequence of jgi.p|Nanoce1779_2|593763

>mRNA_6105-protein ID=mRNA_6105-protein|Name=jgi.p|Nanoce1779_2|593763|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MITAMPARQKPRSCRPASFPASALLAFLLLPSSHAYLMPRVSKSADFSNP
PQHRYDRAKQRPLTGASFPSSSVSVSPLAVAATSTTASTTNIKRELVGAS
KFVRQNPQSDRFKVLNFHHVEFYCGDATNTYRRFQLGLGMNLVAKSDLST
GNSRFASYCLRSNNLQMVFTAPYSMSVTTTKAPTPVAAVAVANGDELERD
PNPGFDSKHATDFFTQHGVAVRAIGLEVEDATKAYTECIAHGGQAVLEPV
RLVPAPMSGQRGYAVMSEVRAYGDVVLRFVSKHEGYAGSFLPAYTEEDIS
PPSSSSSRKILDYGLERVDHAVGNVWELLDAVGYIGEMTGFHPFAEFVAE
DVGTIDSGLNSIVLANNAEDVLLPLNEPTYGTKRQSQIQTYLECNKGPGV
QHLALATKNIFSTMRKMRAVSEMGGFSFMAPPPPSYYRALPKRLEGALTH
QQLEEVEELGLLADKDDQGVLLQIFTLPVGDRPTLFLEIIQRVGCETPDP
SNLGETIQKGGCGGFGKGNFAALFKSIEEYEKKLNV*

mRNA from alignment at scaffold_14:524972..526823+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6105 ID=mRNA_6105|Name=jgi.p|Nanoce1779_2|593763|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_14:524972..526823+ (Nannochloropsis oceanica)
ACAGGATTCCTACGACGATGATCACCGCCATGCCGGCGAGGCAAAAGCCA
AGAAGCTGCCGACCGGCTTCGTTCCCTGCCTCCGCCCTTCTCGCCTTCCT
CCTCCTCCCCTCCTCCCATGCCTACCTAATGCCACGTGTGTCCAAGTCCG
CCGACTTTTCCAATCCGCCACAGCACCGCTACGACCGAGCGAAACAGCGG
CCACTCACCGGCGCCTCCTTCCCCTCCTCTTCTGTCTCCGTCTCTCCCCT
CGCGGTCGCCGCCACCAGCACCACCGCTAGCACGACAAACATCAAACGGG
AGCTCGTAGGCGCCTCAAAGTTCGTCCGACAAAACCCGCAATCCGACCGG
TTCAAGGTCCTCAACTTCCACCACGTCGAGTTCTACTGCGGTGACGCCAC
AAATACCTACCGTCGTTTCCAGCTGGGGCTAGGCATGAATCTGGTTGCGA
AATCAGACCTCTCCACTGGCAACAGTCGGTTTGCAAGCTACTGCCTCCGC
TCAAACAACTTGCAGATGGTCTTCACGGCTCCGTACTCCATGAGCGTCAC
CACCACCAAAGCGCCAACACCGGTAGCAGCAGTAGCAGTAGCAAATGGGG
ATGAATTGGAACGTGATCCTAATCCCGGCTTCGACTCTAAGCATGCCACC
GACTTTTTCACTCAACACGGAGTAGCGGTCCGTGCGATTGGATTAGAAGT
CGAGGACGCGACAAAGGCCTACACTGAATGCATTGCCCATGGAGGCCAAG
CGGTATTGGAACCTGTAAGGCTCGTGCCTGCTCCTATGTCGGGACAGAGG
GGCTATGCTGTTATGTCTGAAGTAAGGGCCTACGGAGACGTGGTCCTCCG
GTTTGTCTCAAAGCATGAGGGCTACGCCGGGTCCTTCCTCCCTGCTTACA
CAGAGGAGGACATATCCCCTCCCAGCAGCAGCAGCAGTAGGAAGATACTC
GATTATGGCTTGGAGCGAGTCGATCACGCCGTCGGAAACGTCTGGGAGCT
CCTCGACGCTGTTGGGTACATCGGGGAAATGACCGGCTTCCACCCATTTG
CTGAGTTCGTGGCCGAGGATGTGGGCACGATAGACAGCGGTCTCAATTCT
ATCGTCCTGGCCAACAACGCGGAAGATGTCTTGCTGCCCCTCAATGAACC
TACCTACGGTACGAAGCGGCAAAGCCAAATCCAAACCTACCTGGAGTGCA
ACAAGGGGCCTGGCGTCCAACACCTCGCTTTGGCAACCAAAAACATCTTT
TCGACCATGAGAAAAATGCGGGCCGTCTCTGAGATGGGTGGATTCTCATT
CATGGCTCCCCCTCCTCCGTCGTACTATCGCGCGCTGCCGAAACGGTTGG
AGGGAGCACTGACGCACCAGCAGCTCGAGGAGGTGGAGGAGCTGGGCTTG
CTGGCGGATAAAGACGACCAGGGGGTACTCCTTCAGGTAGGAAAGGAAAG
GGGGGAGGAAGAAAGAGAGAGGGGGGAAGAAGGATCAAGACACGCAAATG
AATGCGACGCTTCCAAATACTCACCAAGAGTTCCTCCCTCCTTCCTTGTC
TTCGTACCTCAGATCTTTACCCTCCCCGTCGGTGACCGGCCCACGCTCTT
CCTGGAAATCATTCAACGCGTCGGGTGCGAAACTCCTGATCCTTCAAATC
TGGGCGAGACGATACAGAAAGGAGGCTGCGGTGGCTTTGGCAAGGGGAAC
TTTGCCGCGCTTTTCAAGTCCATTGAGGAGTATGAGAAGAAATTAAATGT
CTAGGAAAGGCAGGAAGAGAGGGAGGGAATGAAGGAGGGAACTGTCGTCG
GCGTATGATGTACAAAGGGTGGGTAGGTGATGACAAACGAATAGAGCAAG
AC

Coding sequence (CDS) from alignment at scaffold_14:524972..526823+

>mRNA_6105 ID=mRNA_6105|Name=jgi.p|Nanoce1779_2|593763|organism=Nannochloropsis oceanica|type=CDS|length=3222bp|location=Sequence derived from alignment at scaffold_14:524972..526823+ (Nannochloropsis oceanica)
ATGATCACCGCCATGCCGGCGAGGCAAAAGCCAAGAAGCTGCCGACCGGC
TTCGTTCCCTGCCTCCGCCCTTCTCGCCTTCCTCCTCCTCCCCTCCTCCC
ATGCCTACCTAATGCCACGTGTGTCCAAGTCCGCCGACTTTTCCAATCCG
CCACAGCACCGCTACGACCGAGCGAAACAGCGGCCACTCACCGGCGCCTC
CTTCCCCTCCTCTTCTGTCTCCGTCTCTCCCCTCGCGGTCGCCGCCACCA
GCACCACCGCTAGCACGACAAACATCAAACGGGAGCTCGTAGGCGCCTCA
AAGTTCGTCCGACAAAACCCGCAATCCGACCGGTTCAAGGTCCTCAACTT
CCACCACGTCGAGTTCTACTGCGGTGACGCCACAAATACCTACCGTCGTT
TCCAGCTGGGGCTAGGCATGAATCTGGTTGCGAAATCAGACCTCTCCACT
GGCAACAGTCGGTTTGCAAGCTACTGCCTCCGCTCAAACAACTTGCAGAT
GGTCTTCACGGCTCCGTACTCCATGAGCGTCACCACCACCAAAGCGCCAA
CACCGGTAGCAGCAGTAGCAGTAGCAAATGGGGATGAATTGGAACGTGAT
CCTAATCCCGGCTTCGACTCTAAGCATGCCACCGACTTTTTCACTCAACA
CGGAGTAGCGGTCCGTGCGATTGGATTAGAAGTCGAGGACGCGACAAAGG
CCTACACTGAATGCATTGCCCATGGAGGCCAAGCGGTATTGGAACCTGTA
AGGCTCGTGCCTGCTCCTATGTCGGGACAGAGGGGCTATGCTGTTATGTC
TGAAGTAAGGGCCTACGGAGACGTGGTCCTCCGGTTTGTCTCAAAGCATG
AGGGCTACGCCGGGTCCTTCCTCCCTGCTTACACAGAGGAGGACATATCC
CCTCCCAGCAGCAGCAGCAGTAGGAAGATACTCGATTATGGCTTGGAGCG
AGTCGATCACGCCGTCGGAAACGTCTGGGAGCTCCTCGACGCTGTTGGGT
ACATCGGGGAAATGACCGGCTTCCACCCATTTGCTGAGTTCGTGGCCGAG
GATGTGGGCACGATAGACAGCGGTCTCAATTCTATCGTCCTGGCCAACAA
CGCGGAAGATGTCTTGCTGCCCCTCAATGAACCTACCTACGGTACGAAGC
GGCAAAGCCAAATCCAAACCTACCTGGAGTGCAACAAGGGGCCTGGCGTC
CAACACCTCGCTTTGGCAACCAAAAACATCTTTTCGACCATGAGAAAAAT
GCGGGCCGTCTCTGAGATGGGTGGATTCTCATTCATGGCTCCCCCTCCTC
CGTCGTACTATCGCGCGCTGCCGAAACGGTTGGAGGGAGCACTGACGCAC
CAGCAGCTCGAGGAGGTGGAGGAGCTGGGCTTGCTGGCGGATAAAGACGA
CCAGGGGGTACTCCTTCAGATCTTTACCCTCCCCGTCGGTGACCGGCCCA
CGCTCTTCCTGGAAATCATTCAACGCGTCGGGTGCGAAACTCCTGATCCT
TCAAATCTGGGCGAGACGATACAGAAAGGAGGCTGCGGTGGCTTTGGCAA
GGGGAACTTTGCCGCGCTTTTCAAGTCCATTGAGGAGTATGAGAAGAAAT
TAAATGTCTAGATGATCACCGCCATGCCGGCGAGGCAAAAGCCAAGAAGC
TGCCGACCGGCTTCGTTCCCTGCCTCCGCCCTTCTCGCCTTCCTCCTCCT
CCCCTCCTCCCATGCCTACCTAATGCCACGTGTGTCCAAGTCCGCCGACT
TTTCCAATCCGCCACAGCACCGCTACGACCGAGCGAAACAGCGGCCACTC
ACCGGCGCCTCCTTCCCCTCCTCTTCTGTCTCCGTCTCTCCCCTCGCGGT
CGCCGCCACCAGCACCACCGCTAGCACGACAAACATCAAACGGGAGCTCG
TAGGCGCCTCAAAGTTCGTCCGACAAAACCCGCAATCCGACCGGTTCAAG
GTCCTCAACTTCCACCACGTCGAGTTCTACTGCGGTGACGCCACAAATAC
CTACCGTCGTTTCCAGCTGGGGCTAGGCATGAATCTGGTTGCGAAATCAG
ACCTCTCCACTGGCAACAGTCGGTTTGCAAGCTACTGCCTCCGCTCAAAC
AACTTGCAGATGGTCTTCACGGCTCCGTACTCCATGAGCGTCACCACCAC
CAAAGCGCCAACACCGGTAGCAGCAGTAGCAGTAGCAAATGGGGATGAAT
TGGAACGTGATCCTAATCCCGGCTTCGACTCTAAGCATGCCACCGACTTT
TTCACTCAACACGGAGTAGCGGTCCGTGCGATTGGATTAGAAGTCGAGGA
CGCGACAAAGGCCTACACTGAATGCATTGCCCATGGAGGCCAAGCGGTAT
TGGAACCTGTAAGGCTCGTGCCTGCTCCTATGTCGGGACAGAGGGGCTAT
GCTGTTATGTCTGAAGTAAGGGCCTACGGAGACGTGGTCCTCCGGTTTGT
CTCAAAGCATGAGGGCTACGCCGGGTCCTTCCTCCCTGCTTACACAGAGG
AGGACATATCCCCTCCCAGCAGCAGCAGCAGTAGGAAGATACTCGATTAT
GGCTTGGAGCGAGTCGATCACGCCGTCGGAAACGTCTGGGAGCTCCTCGA
CGCTGTTGGGTACATCGGGGAAATGACCGGCTTCCACCCATTTGCTGAGT
TCGTGGCCGAGGATGTGGGCACGATAGACAGCGGTCTCAATTCTATCGTC
CTGGCCAACAACGCGGAAGATGTCTTGCTGCCCCTCAATGAACCTACCTA
CGGTACGAAGCGGCAAAGCCAAATCCAAACCTACCTGGAGTGCAACAAGG
GGCCTGGCGTCCAACACCTCGCTTTGGCAACCAAAAACATCTTTTCGACC
ATGAGAAAAATGCGGGCCGTCTCTGAGATGGGTGGATTCTCATTCATGGC
TCCCCCTCCTCCGTCGTACTATCGCGCGCTGCCGAAACGGTTGGAGGGAG
CACTGACGCACCAGCAGCTCGAGGAGGTGGAGGAGCTGGGCTTGCTGGCG
GATAAAGACGACCAGGGGGTACTCCTTCAGATCTTTACCCTCCCCGTCGG
TGACCGGCCCACGCTCTTCCTGGAAATCATTCAACGCGTCGGGTGCGAAA
CTCCTGATCCTTCAAATCTGGGCGAGACGATACAGAAAGGAGGCTGCGGT
GGCTTTGGCAAGGGGAACTTTGCCGCGCTTTTCAAGTCCATTGAGGAGTA
TGAGAAGAAATTAAATGTCTAG

Synonyms

Publications