jgi.p|Nanoce1779_2|593760, mRNA_6104 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593760
Unique NamemRNA_6104
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length896
Alignment locationscaffold_14:523774..524669 -

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Properties
Property NameValue
TranscriptId593846
TrackFilteredModels2
ProteinId593760
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:523774..524669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593760gene_6104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593760mRNA_6104-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6104CDS_6104Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6104 ID=mRNA_6104|Name=jgi.p|Nanoce1779_2|593760|organism=Nannochloropsis oceanica|type=mRNA|length=896bp
ACAGGCACAAAAATTATGGCCGATAACAACTTCGCCACGGCACCCGACTA
TGAGGAGGATAAGCGCAAGTAAGTAACAGGCAGGTCGTACATGCGCATGG
TCGATACACCTAGTAACCTCCCCATCCATATCGATCTCTTCTTCCCTAGA
ATCGCTGCCGTCATTCCGTATTATGCCTTCCACGGCATCGACCGCTTCTA
CGACATCAGCGGGCTCATGCTGGATCCGGCGTTGTTCCGTCGAACCGTGG
AAATTCTGGCGGAGCGTTACAAGGGCCAGGCAATCGATAAGATTGGTGGC
TTTGATGCCCGTGGCTTTGTGTTGGGCACGCCTCTGGCTTTGGCATTGGA
AGTTCCTTTTTTCATGCTTCGGAAGCAAAGCAAGCTTCCAAATTCGGTGA
CAGGCGCGTCATACACTAAGGAGTATAAGGGCGATGATGGACAGGGGGGG
GATGCGTTGTGTATTTCTCGGACGGCTATTCAGCCCGGGGATCGGGTGCT
GTTGATTGATGATTTGATTGCGACAGGCGGGACGTTGATGGCGGGTTTGG
ACCTCGTGAAGGCCCAACAAGGGGTGGTGGTGGAGGCGGCATGCATGATT
GAATTGGGTTTCTTGGGGGGAGGAAAGAAGGTGAGGGAGAAGTACCCGGA
TGTGAGTGTGTGGTCGTTTATTTCAGAGAAGCACCTTCAGACGAAAGGAG
AGGTGATGGCCAAGGAATAGAAAGGAGAGTTGTGTGAGTGGGATGGGATG
GAAGAAAGGGAGGCAGGGGAGGACAAGAGGTTTTTCCCGTGCACGTGGAA
TGGGATTGCTGTGATTCTCTCCGACGAGCAGAAGAGTGTTTAAAGCACAC
ATACAACGCGACCACAATACAGAAACAAGGCAAGAACATTCTTTGA
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protein sequence of jgi.p|Nanoce1779_2|593760

>mRNA_6104-protein ID=mRNA_6104-protein|Name=jgi.p|Nanoce1779_2|593760|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRMVDTPSNLPIHIDLFFPRIAAVIPYYAFHGIDRFYDISGLMLDPALFR
RTVEILAERYKGQAIDKIGGFDARGFVLGTPLALALEVPFFMLRKQSKLP
NSVTGASYTKEYKGDDGQGGDALCISRTAIQPGDRVLLIDDLIATGGTLM
AGLDLVKAQQGVVVEAACMIELGFLGGGKKVREKYPDVSVWSFISEKHLQ
TKGEVMAKE*
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mRNA from alignment at scaffold_14:523774..524669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6104 ID=mRNA_6104|Name=jgi.p|Nanoce1779_2|593760|organism=Nannochloropsis oceanica|type=mRNA|length=896bp|location=Sequence derived from alignment at scaffold_14:523774..524669- (Nannochloropsis oceanica)
ACAGGCACAAAAATTATGGCCGATAACAACTTCGCCACGGCACCCGACTA
TGAGGAGGATAAGCGCAAGTAAGTAACAGGCAGGTCGTACATGCGCATGG
TCGATACACCTAGTAACCTCCCCATCCATATCGATCTCTTCTTCCCTAGA
ATCGCTGCCGTCATTCCGTATTATGCCTTCCACGGCATCGACCGCTTCTA
CGACATCAGCGGGCTCATGCTGGATCCGGCGTTGTTCCGTCGAACCGTGG
AAATTCTGGCGGAGCGTTACAAGGGCCAGGCAATCGATAAGATTGGTGGC
TTTGATGCCCGTGGCTTTGTGTTGGGCACGCCTCTGGCTTTGGCATTGGA
AGTTCCTTTTTTCATGCTTCGGAAGCAAAGCAAGCTTCCAAATTCGGTGA
CAGGCGCGTCATACACTAAGGAGTATAAGGGCGATGATGGACAGGGGGGG
GATGCGTTGTGTATTTCTCGGACGGCTATTCAGCCCGGGGATCGGGTGCT
GTTGATTGATGATTTGATTGCGACAGGCGGGACGTTGATGGCGGGTTTGG
ACCTCGTGAAGGCCCAACAAGGGGTGGTGGTGGAGGCGGCATGCATGATT
GAATTGGGTTTCTTGGGGGGAGGAAAGAAGGTGAGGGAGAAGTACCCGGA
TGTGAGTGTGTGGTCGTTTATTTCAGAGAAGCACCTTCAGACGAAAGGAG
AGGTGATGGCCAAGGAATAGAAAGGAGAGTTGTGTGAGTGGGATGGGATG
GAAGAAAGGGAGGCAGGGGAGGACAAGAGGTTTTTCCCGTGCACGTGGAA
TGGGATTGCTGTGATTCTCTCCGACGAGCAGAAGAGTGTTTAAAGCACAC
ATACAACGCGACCACAATACAGAAACAAGGCAAGAACATTCTTTGA
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Coding sequence (CDS) from alignment at scaffold_14:523774..524669-

>mRNA_6104 ID=mRNA_6104|Name=jgi.p|Nanoce1779_2|593760|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_14:523774..524669- (Nannochloropsis oceanica)
ATGCGCATGGTCGATACACCTAGTAACCTCCCCATCCATATCGATCTCTT
CTTCCCTAGAATCGCTGCCGTCATTCCGTATTATGCCTTCCACGGCATCG
ACCGCTTCTACGACATCAGCGGGCTCATGCTGGATCCGGCGTTGTTCCGT
CGAACCGTGGAAATTCTGGCGGAGCGTTACAAGGGCCAGGCAATCGATAA
GATTGGTGGCTTTGATGCCCGTGGCTTTGTGTTGGGCACGCCTCTGGCTT
TGGCATTGGAAGTTCCTTTTTTCATGCTTCGGAAGCAAAGCAAGCTTCCA
AATTCGGTGACAGGCGCGTCATACACTAAGGAGTATAAGGGCGATGATGG
ACAGGGGGGGGATGCGTTGTGTATTTCTCGGACGGCTATTCAGCCCGGGG
ATCGGGTGCTGTTGATTGATGATTTGATTGCGACAGGCGGGACGTTGATG
GCGGGTTTGGACCTCGTGAAGGCCCAACAAGGGGTGGTGGTGGAGGCGGC
ATGCATGATTGAATTGGGTTTCTTGGGGGGAGGAAAGAAGGTGAGGGAGA
AGTACCCGGATGTGAGTGTGTGGTCGTTTATTTCAGAGAAGCACCTTCAG
ACGAAAGGAGAGGTGATGGCCAAGGAATAG
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Synonyms
Publications